ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal1d02 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 150 bits (378), Expect = 3e-36 Identities = 76/115 (66%), Positives = 86/115 (74%), Gaps = 2/115 (1%) Frame = +1 Query: 40 ESLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKY 213 + LPSLSR +SF V SG KKIKVDKPLG+GGG+ + +D++GRK KGVYQFVDKY Sbjct: 25 KGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKY 84 Query: 214 GANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 378 GANVDGYSPIY EEW+ +GD YAGGTTGLLIWAVT VYNTSALA Sbjct: 85 GANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALA 139
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 141 bits (356), Expect = 9e-34 Identities = 72/121 (59%), Positives = 82/121 (67%), Gaps = 2/121 (1%) Frame = +1 Query: 22 LADCGAESLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVY 195 L + LPSL+R SSF VV SG KK+K DKP G+ G + + +DA+GRK KGVY Sbjct: 17 LEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVY 76 Query: 196 QFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSAL 375 Q+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT VYNTSAL Sbjct: 77 QYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSAL 136 Query: 376 A 378 A Sbjct: 137 A 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 141 bits (356), Expect = 9e-34 Identities = 72/121 (59%), Positives = 82/121 (67%), Gaps = 2/121 (1%) Frame = +1 Query: 22 LADCGAESLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVY 195 L + LPSL+R SSF VV SG KK+K DKP G+ G + + +DA+GRK KGVY Sbjct: 17 LEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVY 76 Query: 196 QFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSAL 375 Q+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT VYNTSAL Sbjct: 77 QYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSAL 136 Query: 376 A 378 A Sbjct: 137 A 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 137 bits (346), Expect = 1e-32 Identities = 69/115 (60%), Positives = 81/115 (70%), Gaps = 2/115 (1%) Frame = +1 Query: 40 ESLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKY 213 + LPSL+R SSF V SG KK+K DKP G+ G +++ +DA+GRK KGVYQFVDKY Sbjct: 21 KGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKY 80 Query: 214 GANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 378 GANVDGYSPIY ++WS SGD Y GGTTGL IWAVT V+NTSALA Sbjct: 81 GANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 132 bits (333), Expect = 4e-31 Identities = 68/116 (58%), Positives = 77/116 (66%), Gaps = 2/116 (1%) Frame = +1 Query: 37 AESLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDK 210 A LPSL+R SF +V SG KKIK DKP G+ G + + +DA+GRK GVY++VDK Sbjct: 24 ARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDK 83 Query: 211 YGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 378 YGANVDGYSPIY EWS SGD Y GG TGL IWAVT VYNTSALA Sbjct: 84 YGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 132 bits (332), Expect = 6e-31 Identities = 70/117 (59%), Positives = 79/117 (67%), Gaps = 3/117 (2%) Frame = +1 Query: 37 AESLPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 207 A LPSL+R SSF +V SG KKIK DKP G+ G + + +DA+GRK GVY+FVD Sbjct: 24 ARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVD 83 Query: 208 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 378 KYGANVDGYSPIY +EWS SGD Y GG TGL IWAVT VYNTSALA Sbjct: 84 KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 119 bits (298), Expect = 5e-27 Identities = 59/104 (56%), Positives = 68/104 (65%), Gaps = 2/104 (1%) Frame = +1 Query: 73 SFAVVCSGGKKIKVDKPLGLGGGLTVD--IDANGRKVGKKGVYQFVDKYGANVDGYSPIY 246 S +V KK++ +P G GGG+ +DA+GR KGVYQF DKYGANVDGYSPIY Sbjct: 34 SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIY 93 Query: 247 TPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 378 TPEEWS SGD Y GG TGL +WAVT VY+TSALA Sbjct: 94 TPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = +1 Query: 91 SGGKKIKVDKPLGLGGGLTVDIDA 162 SGGKKIKVDKPLGLGGGLTVDIDA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1305 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = -3 Query: 191 TPFLPTFLPLASMSTVKPPP--SPRGLSTLIFLPPLQTTAKEEPRRERDGRLSAPQS 27 +P LP LPL PPP +P L L Q A+++ ++E+ G AP S Sbjct: 893 SPLLPPPLPLLRPGGAPPPPPKNPARLMALALAERAQQVAEQQSQQEQGGTPPAPHS 949
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 188 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 54 P+LP P S + PPPS P G T I PL++ AK + ++ Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.8 bits (68), Expect = 2.4 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -3 Query: 230 PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 81 P T P +T TP PT P+ + +TV P P+P G T P TT Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -3 Query: 230 PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 81 P+T+ + N P PT P+ + +TV P P+P G T P TT Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -3 Query: 179 PTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDGRLSAP 33 PT P+ + +TV P P+P G T P+ TT P G + P Sbjct: 4150 PTTTPITTTTTVTPTPTPTGTQTPT-TTPITTTTTVTPTPTPTGTQTGP 4197
>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 446 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = +1 Query: 46 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVDIDANGRKVGKKGV 192 L ++ R AVVC GG + K D L L G+T DI G KV + V Sbjct: 354 LSEVNTRELGMAVVCLGGGRRKADDKLDLSVGMT-DILTVGSKVDSESV 401
>ADH_SULTO (Q96XE0) NAD-dependent alcohol dehydrogenase (EC 1.1.1.1)| Length = 347 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%) Frame = +1 Query: 28 DCGAESLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVDIDANGRK---------VG 180 D E+L + R G+ + + S + + + G G ID N + + Sbjct: 203 DVREEALEAAKRAGADYVINASSQDPVSEIRRITQGKGADAVIDLNNSEKTLSIYPYVLA 262 Query: 181 KKGVYQFVDKYGANVDGYSPIYTPEE 258 K+G Y V +GA++ ++P+ T E Sbjct: 263 KQGKYVMVGLFGADLKYHAPLITLNE 288
>YE86_SCHPO (O14302) Hypothetical protein C9G1.06c in chromosome I| Length = 886 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -3 Query: 140 PPPSPRGLSTLIFLPPLQTTAKE--EPRRERDGRLSAPQSAR 21 P P PR +STLI L ++TTA +PR + R S QS R Sbjct: 302 PAPIPRPVSTLIPLTQVRTTASNVIKPRPQTTERPSTAQSFR 343
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = -3 Query: 188 PFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDGRLSAP 33 P P PL S+ PP+PRG L PP T + +P ER SAP Sbjct: 68 PVPPAAAPLLDFSSDSVPPAPRG--PLPAAPP--TAPERQPSWERSPAASAP 115
>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor| Length = 265 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +1 Query: 85 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 252 +CSG KI+ K +G + T D +A + VG G Y +V Y A DGY+ Y+P Sbjct: 59 LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 167 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 48 P+ T KPP P G + PP Q T E+P E+ G Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387
>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)| Length = 433 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 91 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 240 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 91 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 240 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,650,195 Number of Sequences: 219361 Number of extensions: 908409 Number of successful extensions: 3423 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3408 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
