ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal1c22 |
|---|---|
| Clone Library Name | barley_pub |
>FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 628 Score = 103 bits (258), Expect = 3e-22 Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 8/99 (8%) Frame = +2 Query: 212 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELL 391 ++SSRM+Y RFLEYLD VK+VDL+EN AIVEA+ PELGNRVQR+RV+LP + EL+ Sbjct: 38 IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELI 97 Query: 392 QKLREKNIDFAAHNQQEDS------GNLLFNLI--GNLA 484 KLR+ N+D AH + S GNLLF LI G LA Sbjct: 98 TKLRKANVDLDAHPPKSTSAVWGLLGNLLFPLILVGGLA 136
>FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 631 Score = 101 bits (252), Expect = 1e-21 Identities = 51/92 (55%), Positives = 68/92 (73%) Frame = +2 Query: 206 QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQE 385 + ++SSRM+Y RFLEYLD VKKVDL++ G AIVEAI PELGNR+QR+RV+LP + E Sbjct: 36 KNIASSRMTYGRFLEYLDLGWVKKVDLYDEGHTAIVEAIGPELGNRIQRIRVELPATAPE 95 Query: 386 LLQKLREKNIDFAAHNQQEDSGNLLFNLIGNL 481 L+ KLR+ N+D AH + + ++LIGNL Sbjct: 96 LITKLRKANVDLDAHATNDSTP--AWSLIGNL 125
>FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 644 Score = 90.1 bits (222), Expect = 4e-18 Identities = 45/90 (50%), Positives = 65/90 (72%) Frame = +2 Query: 212 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELL 391 V SS+M+Y RFLEYL+ V +VDL++N AIV+A SPELGNR Q +RV++P + +L+ Sbjct: 50 VISSKMTYGRFLEYLEMGWVNQVDLYDNSRNAIVQASSPELGNRPQTIRVEIPVGASQLI 109 Query: 392 QKLREKNIDFAAHNQQEDSGNLLFNLIGNL 481 QKL+E NIDF AH ++ N+ N++ N+ Sbjct: 110 QKLKEYNIDFDAHPAEQK--NIFVNILSNI 137
>FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 614 Score = 83.2 bits (204), Expect = 5e-16 Identities = 41/72 (56%), Positives = 53/72 (73%) Frame = +2 Query: 215 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQ 394 SSSRM+Y RFLEY+D + VKKVDL++N AIV+ I+P++ Q VRV+LP S EL+ Sbjct: 37 SSSRMTYGRFLEYIDMNWVKKVDLYDNARTAIVDIINPDIKGEEQLVRVELPTFSSELVS 96 Query: 395 KLREKNIDFAAH 430 KL+ K IDF AH Sbjct: 97 KLKNKLIDFDAH 108
>FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3.4.24.-)| Length = 627 Score = 71.2 bits (173), Expect = 2e-12 Identities = 37/89 (41%), Positives = 58/89 (65%) Frame = +2 Query: 215 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQ 394 +++RM+Y RFLEY+D R+ VDL+ENG AIV+ PE+ +R R RV LP + EL+ Sbjct: 39 ANTRMTYGRFLEYVDAGRITSVDLYENGRTAIVQVSDPEV-DRTLRSRVDLPTNAPELIA 97 Query: 395 KLREKNIDFAAHNQQEDSGNLLFNLIGNL 481 +LR+ NI +H + + +++ +GNL Sbjct: 98 RLRDSNIRLDSHPVR--NNGMVWGFVGNL 124
>FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP)| Length = 603 Score = 55.8 bits (133), Expect = 8e-08 Identities = 31/79 (39%), Positives = 49/79 (62%) Frame = +2 Query: 194 LADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPG 373 LA+ V++SRM+Y R LEY+ VK++D+++ A++EA SPE G Q +RV LP Sbjct: 22 LANQMPVATSRMTYGRLLEYMQMGWVKRIDVYDR--TALIEASSPETG--WQWIRVDLPA 77 Query: 374 LSQELLQKLREKNIDFAAH 430 S + L++ + +ID H Sbjct: 78 NSSDWLEQAKTLHIDVDVH 96
>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast| precursor (EC 3.4.24.-) Length = 716 Score = 38.1 bits (87), Expect = 0.017 Identities = 28/87 (32%), Positives = 47/87 (54%) Frame = +2 Query: 221 SRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKL 400 S+ YS FL + K +V++V ++G++ + A+ NR R V +P +L+ L Sbjct: 132 SQWRYSEFLNAVKKGKVERVRFSKDGSVVQLTAVD----NR--RASVIVPN-DPDLIDIL 184 Query: 401 REKNIDFAAHNQQEDSGNLLFNLIGNL 481 +D + ++ E SGN LF +IGNL Sbjct: 185 AMNGVDISV-SEGESSGNDLFTVIGNL 210
>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) (DS9) Length = 714 Score = 37.7 bits (86), Expect = 0.023 Identities = 26/87 (29%), Positives = 46/87 (52%) Frame = +2 Query: 221 SRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKL 400 S+ YS FL + K +V++V ++G+ + A+ +R V +P +L+ L Sbjct: 125 SQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDG------RRATVTVPN-DPDLIDIL 177 Query: 401 REKNIDFAAHNQQEDSGNLLFNLIGNL 481 +D + ++ + +GN LFNLIGNL Sbjct: 178 AMNGVDISV-SEGDSAGNGLFNLIGNL 203
>FTSH_POPEU (P84578) Cell division protein ftsH homolog, chloroplast (EC| 3.4.24.-) (Fragments) Length = 47 Score = 35.4 bits (80), Expect = 0.11 Identities = 24/52 (46%), Positives = 24/52 (46%) Frame = +2 Query: 242 FLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQK 397 FLEYLDKDRV RVQLPGLSQELLQK Sbjct: 1 FLEYLDKDRV----------------------------RVQLPGLSQELLQK 24
>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) (Fragment) Length = 662 Score = 33.5 bits (75), Expect = 0.43 Identities = 24/88 (27%), Positives = 45/88 (51%) Frame = +2 Query: 218 SSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQK 397 S++ YS FL + K +V++V ++G+ + A+ +R V +P +L+ Sbjct: 101 STQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDG------RRANVIVPN-DPDLIDI 153 Query: 398 LREKNIDFAAHNQQEDSGNLLFNLIGNL 481 L +D + + + GN LF++IGNL Sbjct: 154 LAMNGVDISV--SEGEGGNGLFSVIGNL 179
>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast| precursor (EC 3.4.24.-) Length = 704 Score = 33.5 bits (75), Expect = 0.43 Identities = 25/83 (30%), Positives = 43/83 (51%) Frame = +2 Query: 233 YSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLREKN 412 YS FL + K +V++V ++G++ + A+ NR R V +P +L+ L Sbjct: 126 YSEFLNAVKKGKVERVKFSKDGSVLQLTAVD----NR--RATVIVPN-DPDLIDILAMNG 178 Query: 413 IDFAAHNQQEDSGNLLFNLIGNL 481 +D + + + GN LF+ IGNL Sbjct: 179 VDISV--SEGEGGNGLFDFIGNL 199
>SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 precursor| Length = 1159 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +1 Query: 205 PGRLFLQDVLLQVPRVPRQGQGEEGRPV*ERDHCYRGGHLSRAR--QPRAEGPCAASRPQ 378 PGRL L +VPR P G+ E G GG +AR +P A GP P Sbjct: 55 PGRLGPHAQLTRVPRSPPAGRAEPG-----------GGEDRQARGTEPGAPGPSPGPAPG 103 Query: 379 PG 384 PG Sbjct: 104 PG 105
>HAIR_RAT (P97609) Protein hairless| Length = 1181 Score = 31.2 bits (69), Expect = 2.1 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 10/109 (9%) Frame = +1 Query: 103 GAQAQRV*EEAPQACARRSRPARLADCQQGPRR*PGRLFLQDVLLQ----------VPRV 252 G Q R +E P+ A+ + Q+GPR GR+ L++ L+ V + Sbjct: 437 GRQGARAWQETPETSTGSKAEAQQQEEQRGPR--DGRIRLRESRLEDTSCQHHLAGVTQC 494 Query: 253 PRQGQGEEGRPV*ERDHCYRGGHLSRARQPRAEGPCAASRPQPGASPEA 399 P Q G H + L +P E CA S G+SPEA Sbjct: 495 PSCVQAA-GEVEILTSHSQKSHKLPLEEKPLEEDSCATSEEGGGSSPEA 542
>FTSH2_SYNY3 (P73179) Cell division protein ftsH homolog 2 (EC 3.4.24.-)| Length = 665 Score = 31.2 bits (69), Expect = 2.1 Identities = 23/86 (26%), Positives = 42/86 (48%) Frame = +2 Query: 224 RMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLR 403 +M+Y + ++ + ++V KV++ N AIV G++ Q VQL + ELL LR Sbjct: 83 KMNYGQLIDAIKANQVAKVEVDTNRRQAIVTLKDAPPGSKPQ--TVQLLDNNPELLNLLR 140 Query: 404 EKNIDFAAHNQQEDSGNLLFNLIGNL 481 ++ + + L+ L+ NL Sbjct: 141 SRSETIDLDINRTPDNSALYGLLTNL 166
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = +1 Query: 283 PV*ERDHCYRGGHLSRARQ-PRAEGPCAASRPQP 381 P R HC SR Q PRAE PC S P P Sbjct: 828 PPSRRHHCRSKAKRSRHHQNPRAEAPCYVSHPSP 861
>MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embryonic| Length = 1940 Score = 30.4 bits (67), Expect = 3.6 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%) Frame = +2 Query: 200 DDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLS 379 D++ +++ + R LE + K +D E T+A VE N+V+ + +L GL Sbjct: 929 DEEEINAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEELAGLD 987 Query: 380 QELLQKLREKNIDFAAHNQ-------QEDSGNLLFNLIGNL 481 + + + REK AH Q +ED N L L L Sbjct: 988 ETIAKLTREKKALQEAHQQTLDDLQAEEDKVNSLSKLKSKL 1028
>GAGC_AVISC (P05433) P47(GAG-CRK) protein| Length = 440 Score = 30.4 bits (67), Expect = 3.6 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Frame = -2 Query: 202 IGEGL------VGSQQGGQADSSERKLEEPPLRLAGLVLQGGGHGHRPLRDAAARGER 47 +G GL VG QQG Q + R E+P G G GHR LR A RG+R Sbjct: 178 VGSGLYPSLAGVGEQQG-QGGDTPRGAEQPRA--------GRGAGHRGLRRPAGRGQR 226
>MYH6_HUMAN (P13533) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) Length = 1939 Score = 30.0 bits (66), Expect = 4.7 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = +2 Query: 185 NKALADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 364 N+ L D++ +++ + R LE + K +D E T+A VE N+V+ + + Sbjct: 925 NERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEE 983 Query: 365 LPGLSQELLQKLREKNIDFAAHNQQED 445 + GL + + + +EK AH Q D Sbjct: 984 MAGLDEIIAKLTKEKKALQEAHQQALD 1010
>MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, embryonic (Muscle| embryonic myosin heavy chain) (SMHCE) Length = 1940 Score = 30.0 bits (66), Expect = 4.7 Identities = 23/82 (28%), Positives = 39/82 (47%) Frame = +2 Query: 200 DDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLS 379 D++ +++ + R LE + K +D E T+A VE N+V+ + +L GL Sbjct: 929 DEEEINAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEELSGLD 987 Query: 380 QELLQKLREKNIDFAAHNQQED 445 + + + REK AH Q D Sbjct: 988 ETIAKLTREKKALQEAHQQALD 1009
>MYB2_PHYPA (P80073) Myb-related protein Pp2| Length = 421 Score = 30.0 bits (66), Expect = 4.7 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 9/79 (11%) Frame = +2 Query: 239 RFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQ---------ELL 391 R+ YL D K +F ++ + LGNR R+ QLPG + L Sbjct: 56 RWTNYLRPDL--KRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLK 113 Query: 392 QKLREKNIDFAAHNQQEDS 448 ++LR + +D H EDS Sbjct: 114 KRLRSQGLDPNTHLPLEDS 132
>MYH6_RABIT (P04460) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) (Alpha isomyosin) (Fragment) Length = 465 Score = 30.0 bits (66), Expect = 4.7 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = +2 Query: 185 NKALADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 364 N+ L D++ +++ + R LE + K +D E T+A VE N+V+ + + Sbjct: 120 NERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEE 178 Query: 365 LPGLSQELLQKLREKNIDFAAHNQQED 445 + GL + + + +EK AH Q D Sbjct: 179 MAGLDEIIAKLTKEKKALQEAHQQALD 205
>SYL_CHLMU (Q9PKI4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +2 Query: 194 LADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIA--IVEAISPEL 334 L +QGV+ R +RF E RVK D+FE ++A +V+ ++ ++ Sbjct: 638 LWSNQGVAGCRRFLNRFYEMATSSRVKDEDIFEGMSLAHKLVQRVTDDI 686
>PHBC_RALEU (P23608) Poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-)| (Poly(3-hydroxybutyrate) polymerase) (PHB polymerase) (PHB synthase) (Poly(3-hydroxyalkanoate) polymerase) (PHA polymerase) (PHA synthase) (Polyhydroxyalkanoic acid synthase) Length = 589 Score = 30.0 bits (66), Expect = 4.7 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +1 Query: 484 LPAYPYRRSVLAVEKRGIWWHGWTRW 561 LP P + A+E G WW WT W Sbjct: 529 LPESPQQWLAGAIEHHGSWWPDWTAW 554
>GAG_SFV3L (P27400) Gag polyprotein (Core polyprotein)| Length = 643 Score = 30.0 bits (66), Expect = 4.7 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 460 LQPYRELGLPAYPYRRSVLAVEKRGIWWHGWTRW 561 L ++ LG+P P R V+ + G WW TR+ Sbjct: 12 LNLFQNLGIPRQPNHREVIGLRMLGGWWGPGTRY 45
>YB3_XENLA (Q00436) B box-binding protein (Protein YB3)| Length = 305 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 259 QGQGEEGRPV*ERDHCYRGGHLS------RARQPRAEG 354 QG GE+GRPV R + YRG R RQPR +G Sbjct: 204 QGAGEQGRPV--RQNMYRGFRPQFRRGPPRQRQPREDG 239
>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 259 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 354 QG GE+GRPV R + YRG R RQPR +G Sbjct: 221 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 256
>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 259 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 354 QG GE+GRPV R + YRG R RQPR +G Sbjct: 221 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 256
>YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 321 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 259 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 354 QG GE+GRPV R + YRG R RQPR +G Sbjct: 221 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 256
>SYL_CHLTR (O84211) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +2 Query: 194 LADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIA 307 L +QGV+ R +RF E + DRVK+ + FE ++A Sbjct: 638 LWSNQGVAGCRRFLNRFYEMVSSDRVKEDNNFEGLSLA 675
>DNAJ1_CORDI (Q6NG14) Chaperone protein dnaJ 1| Length = 375 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +2 Query: 335 GNRVQRVRVQLPGL----SQELLQKLREKNIDFAAHNQQEDSGNLLFNLIGN 478 GN + V V +P S+ELL KLR+ D ++ +DS + LF + N Sbjct: 320 GNMIAHVDVSIPTQLDEKSKELLNKLRDHRSDESSVRTADDSDDSLFGRLRN 371
>YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (p50) Length = 323 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 259 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 354 QG GE+GRPV R + YRG R RQPR +G Sbjct: 223 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 258
>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 259 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 354 QG GE+GRPV R + YRG R RQPR +G Sbjct: 223 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 258
>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = +1 Query: 259 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 354 QG GE+GRPV R + YRG R RQPR +G Sbjct: 223 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 258 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,618,558 Number of Sequences: 219361 Number of extensions: 1329662 Number of successful extensions: 5268 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5261 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
