ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal1c12 |
|---|---|
| Clone Library Name | barley_pub |
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 66.6 bits (161), Expect(2) = 7e-23 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = +1 Query: 193 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 309 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476 Score = 59.3 bits (142), Expect(2) = 7e-23 Identities = 27/34 (79%), Positives = 31/34 (91%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 148 Q+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 404 QENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 67.8 bits (164), Expect(2) = 2e-22 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = +1 Query: 196 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 309 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474 Score = 57.0 bits (136), Expect(2) = 2e-22 Identities = 26/34 (76%), Positives = 31/34 (91%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 148 Q+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 404 QENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 63.9 bits (154), Expect(2) = 6e-21 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = +1 Query: 196 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 303 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470 Score = 55.5 bits (132), Expect(2) = 6e-21 Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = +2 Query: 26 GTCSSRXQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 148 G + Q+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 395 GNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 86.7 bits (213), Expect = 3e-17 Identities = 53/103 (51%), Positives = 57/103 (55%) Frame = +1 Query: 1 TVEXLLXYGHMLVXXXXXXXXXXXXXHLHEPGSSG*C*PGCDEDWFLLRLENSPYTPTIS 180 TVE LL YGHMLV + G D + ++ S Y Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALG------DANQDAMKT-GSFY----- 426 Query: 181 CCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 309 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 -----GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464 Score = 71.2 bits (173), Expect = 1e-12 Identities = 34/34 (100%), Positives = 34/34 (100%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 148 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 394 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 62.0 bits (149), Expect(2) = 2e-10 Identities = 28/36 (77%), Positives = 33/36 (91%) Frame = +2 Query: 41 RXQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 148 + Q+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 392 KEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427 Score = 21.9 bits (45), Expect(2) = 2e-10 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 T+E L+ YG+MLV Sbjct: 379 TIEKLIEYGYMLV 391
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 59.7 bits (143), Expect(2) = 2e-10 Identities = 27/34 (79%), Positives = 31/34 (91%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 148 Q+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 391 QENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424 Score = 24.3 bits (51), Expect(2) = 2e-10 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 T+E L+ YGHMLV Sbjct: 376 TIEKLMEYGHMLV 388
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 60.5 bits (145), Expect(2) = 4e-10 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = +2 Query: 26 GTCSSRXQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 148 G + Q+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 397 GNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437 Score = 22.3 bits (46), Expect(2) = 4e-10 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 T+E LL YG+MLV Sbjct: 389 TIEKLLEYGNMLV 401
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 57.4 bits (137), Expect(2) = 5e-10 Identities = 25/33 (75%), Positives = 32/33 (96%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 145 Q+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 400 QENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432 Score = 25.0 bits (53), Expect(2) = 5e-10 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 T+E LL YGHMLV Sbjct: 385 TIEKLLEYGHMLV 397
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 56.2 bits (134), Expect(2) = 1e-08 Identities = 26/32 (81%), Positives = 30/32 (93%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAALGDANQDAMKTGSF 142 Q+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 404 QENVKRVQLADKYMSEAALGDANQDAIKRGTF 435 Score = 21.2 bits (43), Expect(2) = 1e-08 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 T++ LL YG+MLV Sbjct: 389 TIDKLLQYGNMLV 401
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 52.8 bits (125), Expect(2) = 5e-08 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = +2 Query: 26 GTCSSRXQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 142 G + Q+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 401 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439 Score = 22.7 bits (47), Expect(2) = 5e-08 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 TVE LL YG+MLV Sbjct: 393 TVEKLLEYGNMLV 405
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 52.4 bits (124), Expect(2) = 9e-08 Identities = 24/40 (60%), Positives = 30/40 (75%) Frame = +2 Query: 26 GTCSSRXQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 145 G + Q+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 401 GNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440 Score = 22.3 bits (46), Expect(2) = 9e-08 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 T+E LL YG+MLV Sbjct: 393 TIEKLLEYGNMLV 405
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/40 (60%), Positives = 34/40 (85%) Frame = +2 Query: 26 GTCSSRXQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 145 G + Q+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 399 GNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 53.9 bits (128), Expect = 2e-07 Identities = 23/33 (69%), Positives = 32/33 (96%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 145 Q+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 408 QENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 50.1 bits (118), Expect(2) = 7e-07 Identities = 23/37 (62%), Positives = 29/37 (78%) Frame = +2 Query: 26 GTCSSRXQDNVKRVQLADTYMSQAALGDANQDAMKTG 136 G + Q+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 396 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432 Score = 21.6 bits (44), Expect(2) = 7e-07 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 1 TVEXLLXYGHMLV 39 T+E LL YG+MLV Sbjct: 388 TLEKLLEYGNMLV 400
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = +2 Query: 47 QDNVKRVQLADTYMSQAAL 103 Q+NVKRVQLAD Y+S A L Sbjct: 376 QENVKRVQLADAYLSGAEL 394
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = +1 Query: 136 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 294 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -2 Query: 292 CRRRSLPLGRSSWHFGRCNLP 230 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,779,248 Number of Sequences: 219361 Number of extensions: 1369878 Number of successful extensions: 3400 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3296 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3399 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
