ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal1c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 747 0.0
2gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 603 e-169
3gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 581 e-163
4gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 515 e-143
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 448 e-123
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 410 e-111
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 301 1e-78
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 182 7e-43
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 6e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 6e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 6e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
26gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 74 5e-10
27gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 70 7e-09
28gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 70 7e-09
29gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 70 7e-09
30gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 3e-08
31gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 3e-08
32gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 3e-08
33gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 3e-08
34emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase 58 3e-05
35gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 56 1e-04
36gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 44 0.40
37gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.40
38emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.40
39gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co... 42 1.6
40gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.6
41gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.6
42gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c... 42 1.6
43gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com... 42 1.6
44dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 1.6
45dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
46gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.6
47gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
48emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.6
49gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.6
50gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 6.3
51gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 6.3
52gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 6.3
53gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 6.3
54ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 6.3
55gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 6.3
56gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 6.3
57gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 6.3
58gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 6.3
59gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 6.3
60ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 6.3
61gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.3
62dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 6.3
63gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 6.3
64gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 6.3
65gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 6.3
66gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 6.3
67emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 6.3
68ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 6.3
69ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 6.3
70gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 6.3
71emb|Y10657.1|CLRCAGENE C.littorale rca gene 40 6.3
72gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 6.3
73gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 6.3 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  747 bits (377), Expect = 0.0
 Identities = 426/435 (97%), Gaps = 6/435 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    acagtcgagnagctgctagngtacgggcacatgctcgtccaggnagcaggacaatgtcaa 60
            ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1276 acagtcgagaagctgctagagtacgggcacatgctcgtccagg-agcaggacaatgtcaa 1334

                                                                        
Query: 61   gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 1394

                                                                        
Query: 121  tgcgatgaagactggttccttctacggttagaaaattctccatac-acacccaccatctc 179
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1395 tgcgatgaagactggttccttctacggttagaaaattctccatacaacacccaccatctc 1454

                                                                        
Query: 180  ttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccg-tgccggaaggtt 238
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1455 ttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgatgccggaaggtt 1514

                                                                        
Query: 239  gcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacg-acggcagctgc 297
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1515 gcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgaacggcagctgc 1574

                                                                        
Query: 298  ctttacaccttttaagcatgccacttttaatatctgatgttttacctac-ctaagtccgc 356
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1575 ctttacaccttttaagcatgccacttttaatatctgatgttttacctacactaagtccgc 1634

                                                                        
Query: 357  atcgcatccaagcgattgctgggcatgttttgttaatatatctctaaat-atattgagta 415
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 1635 atcgcatccaagcgattgctgggcatgttttgttaatatatctctaaataatattgtgta 1694

                           
Query: 416  tacccatttggcaaa 430
            |||||||||||||||
Sbjct: 1695 tacccatttggcaaa 1709
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  603 bits (304), Expect = e-169
 Identities = 423/459 (92%), Gaps = 12/459 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtcgagnagctgctagngtacgggcacatgctcgtccaggnagcaggacaatgtcaa 60
           ||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 346 acagtggagaagctgctagagtacgggcacatgctcgtccagg-agcaggacaatgtcaa 404

                                                                       
Query: 61  gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 464

                                                                       
Query: 121 tgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctct 180
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 465 tgcgatgaagactggtaccttctacggttagaacattctccatacacacccaccatctct 524

                                                                       
Query: 181 tgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgc 240
           ||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| |||
Sbjct: 525 tgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgc 584

                                                                       
Query: 241 accgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctt 300
           |||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct: 585 accgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcctt 644

                                                                       
Query: 301 tacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt-cc 354
           ||||||||||||||||||||  ||||||||||||||||||| |     ||||||||| ||
Sbjct: 645 tacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagtacc 703

                                                                       
Query: 355 gcatcgcatccaagcgattgctgggcatgttttgttaatatatctctaaatatattgagt 414
           ||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||
Sbjct: 704 gcatcgcatccaagcgattgctgggcatgttttgttaatata----taaagatattgagt 759

                                                  
Query: 415 atacccatttggcaaagaccaatacacctacttatcatt 453
           ||||| |||||| |||||| ||||   ||||||||||||
Sbjct: 760 atacctatttggtaaagacaaataggactacttatcatt 798
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  581 bits (293), Expect = e-163
 Identities = 378/403 (93%), Gaps = 8/403 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    acagtcgagnagctgctagngtacgggcacatgctcgtccaggnagcaggacaatgtcaa 60
            ||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1196 acagtggagaagctgctagagtacgggcacatgctcgtccagg-agcaggacaatgtcaa 1254

                                                                        
Query: 61   gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 1314

                                                                        
Query: 121  tgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctct 180
            |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1315 tgcgatgaagactggtaccttctacggttagaacattctccatacacacccaccatctct 1374

                                                                        
Query: 181  tgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgc 240
            ||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| |||
Sbjct: 1375 tgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgc 1434

                                                                        
Query: 241  accgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctt 300
            |||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct: 1435 accgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcctt 1494

                                                                        
Query: 301  tacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt-cc 354
            ||||||||||||||||||||  ||||||||||||||||||| |     ||||||||| ||
Sbjct: 1495 tacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagtacc 1553

                                                       
Query: 355  gcatcgcatccaagcgattgctgggcatgttttgttaatatat 397
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 gcatcgcatccaagcgattgctgggcatgttttgttaatatat 1596
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  515 bits (260), Expect = e-143
 Identities = 263/264 (99%)
 Strand = Plus / Plus

                                                                        
Query: 194  gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7523 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 7582

                                                                        
Query: 254  ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 7642

                                                                        
Query: 314  catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 7702

                                                                        
Query: 374  gctgggcatgttttgttaatatatctctaaatatattgagtatacccatttggcaaagac 433
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7703 gctgggcatgttttgttaatatatctctaaatatattgtgtatacccatttggcaaagac 7762

                                    
Query: 434  caatacacctacttatcatttgtc 457
            ||||||||||||||||||||||||
Sbjct: 7763 caatacacctacttatcatttgtc 7786



 Score =  365 bits (184), Expect = 9e-98
 Identities = 195/198 (98%), Gaps = 1/198 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    acagtcgagnagctgctagngtacgggcacatgctcgtccaggnagcaggacaatgtcaa 60
            ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7159 acagtcgagaagctgctagagtacgggcacatgctcgtccagg-agcaggacaatgtcaa 7217

                                                                        
Query: 61   gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7218 gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 7277

                                                                        
Query: 121  tgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7278 tgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctct 7337

                              
Query: 181  tgctgcataggaggaggt 198
            ||||||||||||||||||
Sbjct: 7338 tgctgcataggaggaggt 7355



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 47/52 (90%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                
Query: 21   gtacgggcacatgctcgtccaggnagcaggacaatgtcaagcgtgtgcagct 72
            |||||| |||||||| ||||||| ||||||| || |||||||||||||||||
Sbjct: 3911 gtacggccacatgctggtccagg-agcaggagaacgtcaagcgtgtgcagct 3961
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  448 bits (226), Expect = e-123
 Identities = 229/230 (99%)
 Strand = Plus / Plus

                                                                        
Query: 196  ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 1224

                                                                        
Query: 256  aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 1284

                                                                        
Query: 316  tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 1344

                                                              
Query: 376  tgggcatgttttgttaatatatctctaaatatattgagtatacccatttg 425
            |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1345 tgggcatgttttgttaatatatctctaaatatattgtgtatacccatttg 1394



 Score =  266 bits (134), Expect = 6e-68
 Identities = 145/148 (97%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    acagtcgagnagctgctagngtacgggcacatgctcgtccaggnagcaggacaatgtcaa 60
            ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1021 acagtcgagaagctgctagagtacgggcacatgctcgtccagg-agcaggacaatgtcaa 1079

                                                                        
Query: 61   gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 1139

                                        
Query: 121  tgcgatgaagactggttccttctacggt 148
            ||||||||||||||||||||||||||||
Sbjct: 1140 tgcgatgaagactggttccttctacggt 1167
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  410 bits (207), Expect = e-111
 Identities = 333/370 (90%), Gaps = 10/370 (2%)
 Strand = Plus / Plus

                                                                        
Query: 21   gtacgggcacatgctcgtccaggnagcaggacaatgtcaagcgtgtgcagcttgctgaca 80
            |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 1227 gtacggccacatgcttgtccagg-agcaggacaatgtcaagcgtgtgcagcttgcggaca 1285

                                                                        
Query: 81   cctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcct 140
            | ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct: 1286 cttacatgagccaggcagctctgggtgatgcgaacaaggatgccatgaagactggttcct 1345

                                                                        
Query: 141  tctacggttagaaaattctccatacacacccaccatctcttgctgcataggaggaggtaa 200
            ||||||||||||| | ||| |||||||  |||||||||||||||||||||||||||||||
Sbjct: 1346 tctacggttagaacactcttcatacac--ccaccatctcttgctgcataggaggaggtaa 1403

                                                                        
Query: 201  aggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgccaagaa 260
            ||||||||| ||||| |||||||| |||||||||||||| |||||||   ||||||||||
Sbjct: 1404 aggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgccaagaa 1463

                                                                        
Query: 261  ctacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagcatgcca 320
            || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 cttcgacccaaccgcgaggagcgacgacggcagctgcctttacaccttttaagcatgcca 1523

                                                                        
Query: 321  cttttaata-tctgatgttttac-----ctacctaag-tccgcatcgcatccaagcgatt 373
            |||| | || |||||||||| ||      ||||||||  ||||||||||| ||||||| |
Sbjct: 1524 ctttaattattctgatgtttcactctttgtacctaagcaccgcatcgcatacaagcgact 1583

                      
Query: 374  gctgggcatg 383
            ||||||||||
Sbjct: 1584 gctgggcatg 1593
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  301 bits (152), Expect = 1e-78
 Identities = 166/170 (97%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtcgagnagctgctagngtacgggcacatgctcgtccaggnagcaggacaatgtcaa 60
           ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 140 acagtcgagaagctgctagagtacgggcacatgctcgtccagg-agcaggacaatgtcaa 198

                                                                       
Query: 61  gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagga 258

                                                             
Query: 121 tgcgatgaagactggttccttctacggttagaaaattctccatacacacc 170
           ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 259 tgcgatgaagactggttccttctacggttagaacattctccatacacacc 308
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  182 bits (92), Expect = 7e-43
 Identities = 120/128 (93%), Gaps = 1/128 (0%)
 Strand = Plus / Plus

                                                                        
Query: 21   gtacgggcacatgctcgtccaggnagcaggacaatgtcaagcgtgtgcagcttgctgaca 80
            |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 1237 gtacggccacatgcttgtccagg-agcaggacaatgtcaagcgtgtgcagcttgcggaca 1295

                                                                        
Query: 81   cctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcct 140
            | ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct: 1296 cttacatgagccaggcagctctgggtgatgcgaacaaggatgccatgaagactggttcct 1355

                    
Query: 141  tctacggt 148
            ||||||||
Sbjct: 1356 tctacggt 1363



 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Plus

                                                                        
Query: 196  ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 255
            |||||||||||||| ||||| |||||||| |||||||||||||| |||||||   |||||
Sbjct: 1361 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgcc 1420

                                                                        
Query: 256  aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 315
            ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 aagaacttcgacccaaccgcgaggagcgacgacggcagctgcctttacaccttttaagca 1480

                     
Query: 316  tgccacttt 324
            |||||||||
Sbjct: 1481 tgccacttt 1489
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 189  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 245
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1385 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1444

                                                                        
Query: 246  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 305
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1445 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1504

                      
Query: 306  cttttaagca 315
            ||||||||||
Sbjct: 1505 cttttaagca 1514



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1206 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1265

                                                         
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
            |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 1266 gtgacgctaactccgacgccatgaagactggttccttctacggtt 1310
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 189  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 245
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1423 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1482

                                                                        
Query: 246  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 305
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1483 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1542

                      
Query: 306  cttttaagca 315
            ||||||||||
Sbjct: 1543 cttttaagca 1552



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1244 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1303

                                                         
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
            |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 1304 gtgacgctaactccgacgccatgaagactggttccttctacggtt 1348
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 189  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 245
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1422 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1481

                                                                        
Query: 246  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 305
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1482 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1541

                      
Query: 306  cttttaagca 315
            ||||||||||
Sbjct: 1542 cttttaagca 1551



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1243 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1302

                                                         
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
            |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 1303 gtgacgctaactccgacgccatgaagactggttccttctacggtt 1347
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 189  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 245
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1206 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1265

                                                                        
Query: 246  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 305
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1266 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1325

                      
Query: 306  cttttaagca 315
            ||||||||||
Sbjct: 1326 cttttaagca 1335



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1027 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1086

                                                         
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
            |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 1087 gtgacgctaactccgacgccatgaagactggttccttctacggtt 1131
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 189  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 245
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1427 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1486

                                                                        
Query: 246  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 305
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1487 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1546

                      
Query: 306  cttttaagca 315
            ||||||||||
Sbjct: 1547 cttttaagca 1556



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1248 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1307

                                                         
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
            |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 1308 gtgacgctaactccgacgccatgaagactggttccttctacggtt 1352
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                          
Query: 221    tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
              |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 107252 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 107193

                                                 
Query: 281    gcgacgacggcagctgcctttacaccttttaagca 315
              |||||||||||||||||||||||||||||||||||
Sbjct: 107192 gcgacgacggcagctgcctttacaccttttaagca 107158



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                          
Query: 45     agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
              ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 108413 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 108354

                                                              
Query: 105    gtgatgctaaccaggatgcgatgaagactggttccttctacggttaga 152
              |||| ||||||   || || ||||||||||||||||||||||||||||
Sbjct: 108353 gtgacgctaactccgacgccatgaagactggttccttctacggttaga 108306



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 223    cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 282
              ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 112127 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 112068

                             
Query: 283    gacgacggcagctgc 297
              |||||||||||||||
Sbjct: 112067 gacgacggcagctgc 112053
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                         
Query: 221   tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
             |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 29133 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 29074

                                                
Query: 281   gcgacgacggcagctgcctttacaccttttaagca 315
             |||||||||||||||||||||||||||||||||||
Sbjct: 29073 gcgacgacggcagctgcctttacaccttttaagca 29039



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                         
Query: 45    agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
             ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 30290 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 30231

                                                             
Query: 105   gtgatgctaaccaggatgcgatgaagactggttccttctacggttaga 152
             |||| ||||||   || || ||||||||||||||||||||||||||||
Sbjct: 30230 gtgacgctaactccgacgccatgaagactggttccttctacggttaga 30183



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                         
Query: 223   cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 282
             ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 34004 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 33945

                            
Query: 283   gacgacggcagctgc 297
             |||||||||||||||
Sbjct: 33944 gacgacggcagctgc 33930
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 221  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1426 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1485

                                               
Query: 281  gcgacgacggcagctgcctttacaccttttaagca 315
            |||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcgacgacggcagctgcctttacaccttttaagca 1520



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1212 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1271

                                                         
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
            |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 1272 gtgacgctaactccgacgccatgaagactggttccttctacggtt 1316
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 221  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1336 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1395

                                               
Query: 281  gcgacgacggcagctgcctttacaccttttaagca 315
            |||||||||||||||||||||||||||||||||||
Sbjct: 1396 gcgacgacggcagctgcctttacaccttttaagca 1430



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 86/103 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1207 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1266

                                                       
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacgg 147
            |||| ||||||   || || |||||||||||||||||||||||
Sbjct: 1267 gtgacgctaactccgacgccatgaagactggttccttctacgg 1309
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 221      tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
                |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 28302395 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28302336

                                                   
Query: 281      gcgacgacggcagctgcctttacaccttttaagca 315
                |||||||||||||||||||||||||||||||||||
Sbjct: 28302335 gcgacgacggcagctgcctttacaccttttaagca 28302301



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                            
Query: 45       agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
                ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 28303552 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 28303493

                                                                
Query: 105      gtgatgctaaccaggatgcgatgaagactggttccttctacggttaga 152
                |||| ||||||   || || ||||||||||||||||||||||||||||
Sbjct: 28303492 gtgacgctaactccgacgccatgaagactggttccttctacggttaga 28303445



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 223      cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 282
                ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 28307266 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28307207

                               
Query: 283      gacgacggcagctgc 297
                |||||||||||||||
Sbjct: 28307206 gacgacggcagctgc 28307192
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 221      tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
                |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 28284844 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28284785

                                                   
Query: 281      gcgacgacggcagctgcctttacaccttttaagca 315
                |||||||||||||||||||||||||||||||||||
Sbjct: 28284784 gcgacgacggcagctgcctttacaccttttaagca 28284750



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                            
Query: 45       agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
                ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 28286001 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 28285942

                                                                
Query: 105      gtgatgctaaccaggatgcgatgaagactggttccttctacggttaga 152
                |||| ||||||   || || ||||||||||||||||||||||||||||
Sbjct: 28285941 gtgacgctaactccgacgccatgaagactggttccttctacggttaga 28285894



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 223      cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 282
                ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 28289715 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28289656

                               
Query: 283      gacgacggcagctgc 297
                |||||||||||||||
Sbjct: 28289655 gacgacggcagctgc 28289641
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 221  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1371 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1430

                                               
Query: 281  gcgacgacggcagctgcctttacaccttttaagca 315
            |||||||||||||||||||||||||||||||||||
Sbjct: 1431 gcgacgacggcagctgcctttacaccttttaagca 1465



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 86/103 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1242 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1301

                                                       
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacgg 147
            |||| ||||||   || || |||||||||||||||||||||||
Sbjct: 1302 gtgacgctaactccgacgccatgaagactggttccttctacgg 1344
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                       
Query: 221 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
           |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 5   tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 64

                                        
Query: 281 gcgacgacggcagctgcctttacaccttt 309
           |||||||||||||||||||||||||||||
Sbjct: 65  gcgacgacggcagctgcctttacaccttt 93
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 8e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Plus

                                                                        
Query: 189  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 245
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1434 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1493

                                                                        
Query: 246  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 305
            ||    ||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1494 ccctgttgccaagaatt-cgacccaacggcgaggagcgacgacggcagctgcctttacac 1552

                      
Query: 306  cttttaagca 315
            ||||||||||
Sbjct: 1553 cttttaagca 1562



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 1255 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 1314

                                                         
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
            |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 1315 gtgacgctaactccgacgccatgaagactggttccttctacggtt 1359
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                       
Query: 221 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
           |||| ||||||||||||||  ||||||    ||||||||||| |||||||||||| ||||
Sbjct: 41  tgcctgtgccggaaggttgacccgaccctgttgccaagaacttcgacccaacggcgagga 100

                                              
Query: 281 gcgacgacggcagctgcctttacaccttttaagca 315
           |||||||||||||||||||||| | ||||||||||
Sbjct: 101 gcgacgacggcagctgcctttaaaacttttaagca 135
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                           
Query: 221     tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
               |||| ||||||||||||||||||||||    |||||| ||||  ||||||||||| | ||
Sbjct: 4541319 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 4541378

                                                  
Query: 281     gcgacgacggcagctgcctttacaccttttaagca 315
               || ||||| ||| ||||||||||||||| ||||||
Sbjct: 4541379 gcaacgacagcatctgcctttacaccttctaagca 4541413
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 221   tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 280
             |||| ||||||||||||||||||||||    |||||| ||||  ||||||||||| | ||
Sbjct: 84693 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 84752

                                                
Query: 281   gcgacgacggcagctgcctttacaccttttaagca 315
             || ||||| ||| ||||||||||||||| ||||||
Sbjct: 84753 gcaacgacagcatctgcctttacaccttctaagca 84787
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                       
Query: 45  agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
           ||||||| || ||||||||||||||||| |||||    ||| ||||| |||| ||||| |
Sbjct: 461 agcaggagaacgtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttg 520

                                                        
Query: 105 gtgatgctaaccaggatgcgatgaagactggttccttctacggtt 149
           |||| ||||||   || || |||||||||||||||||||||||||
Sbjct: 521 gtgacgctaactccgacgccatgaagactggttccttctacggtt 565
to top
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                       
Query: 45  agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
           ||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| |
Sbjct: 821 agcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctcttg 880

                                                  
Query: 105 gtgatgctaaccaggatgcgatgaagactggttccttct 143
           |||| || ||| |||| || ||||||||||| |||||||
Sbjct: 881 gtgaagccaacgaggacgccatgaagactggctccttct 919
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| |
Sbjct: 1216 agcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctcttg 1275

                                                   
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttct 143
            |||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1276 gtgaagccaacgaggacgccatgaagactggctccttct 1314
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgg 104
            ||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| |
Sbjct: 1216 agcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctcttg 1275

                                                   
Query: 105  gtgatgctaaccaggatgcgatgaagactggttccttct 143
            |||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1276 gtgaagccaacgaggacgccatgaagactggctccttct 1314
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 232  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 291
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1377 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1436

                          
Query: 292  agctgcctttacac 305
            |||||||| |||||
Sbjct: 1437 agctgcctgtacac 1450
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 232  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 291
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1202 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1261

                          
Query: 292  agctgcctttacac 305
            |||||||| |||||
Sbjct: 1262 agctgcctgtacac 1275
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 232  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 291
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1076 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1135

                          
Query: 292  agctgcctttacac 305
            |||||||| |||||
Sbjct: 1136 agctgcctgtacac 1149
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 232  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 291
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1232 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1291

                          
Query: 292  agctgcctttacac 305
            |||||||| |||||
Sbjct: 1292 agctgcctgtacac 1305
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>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 95/116 (81%), Gaps = 1/116 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  agctgctagngtacgggcacatgctcgtccaggnagcaggacaatgtcaagcgtgtgcag 70
           ||||||||| ||| ||  ||||||| ||||||| ||||||||||||| ||| | || || 
Sbjct: 4   agctgctagagtatggaaacatgcttgtccagg-agcaggacaatgtgaagagagttcaa 62

                                                                   
Query: 71  cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 126
           || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| ||||
Sbjct: 63  ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118
to top
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 47/52 (90%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                
Query: 21   gtacgggcacatgctcgtccaggnagcaggacaatgtcaagcgtgtgcagct 72
            |||||| |||||||| ||||||| ||||||| || |||||||||||||||||
Sbjct: 1342 gtacggccacatgctggtccagg-agcaggagaacgtcaagcgtgtgcagct 1392
to top
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 74   gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 123
            |||||||  ||||||||  |||| || || ||||||||||||||||||||
Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355
to top
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 89    agccaggcagctctgggtgatg 110
             ||||||||||||||||||||||
Sbjct: 51254 agccaggcagctctgggtgatg 51275
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>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 389   ttaatatatctctaaatatatt 410
             ||||||||||||||||||||||
Sbjct: 67963 ttaatatatctctaaatatatt 67942
to top
>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 433    ccaatacacctacttatcatt 453
              |||||||||||||||||||||
Sbjct: 109390 ccaatacacctacttatcatt 109370
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 388   gttaatatatctctaaatata 408
             |||||||||||||||||||||
Sbjct: 12335 gttaatatatctctaaatata 12315
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   gttaatatatctctaaatata 408
             |||||||||||||||||||||
Sbjct: 66367 gttaatatatctctaaatata 66387
to top
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 433    ccaatacacctacttatcatt 453
              |||||||||||||||||||||
Sbjct: 149502 ccaatacacctacttatcatt 149522
to top
>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 433    ccaatacacctacttatcatt 453
              |||||||||||||||||||||
Sbjct: 131077 ccaatacacctacttatcatt 131097
to top
>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 433  ccaatacacctacttatcatt 453
            |||||||||||||||||||||
Sbjct: 2331 ccaatacacctacttatcatt 2351
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 319     cacttttaatatctgatgttt 339
               |||||||||||||||||||||
Sbjct: 3040420 cacttttaatatctgatgttt 3040440
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   acccaccatctcttgctgcat 188
             |||||||||||||||||||||
Sbjct: 63550 acccaccatctcttgctgcat 63530
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 319     cacttttaatatctgatgttt 339
               |||||||||||||||||||||
Sbjct: 3040365 cacttttaatatctgatgttt 3040385
to top
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 319    cacttttaatatctgatgttt 339
              |||||||||||||||||||||
Sbjct: 114423 cacttttaatatctgatgttt 114403
to top
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 388  gttaatatatctctaaatata 408
            |||||||||||||||||||||
Sbjct: 6197 gttaatatatctctaaatata 6217
to top
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   tgcataggaggaggtaaagg 203
             ||||||||||||||||||||
Sbjct: 46378 tgcataggaggaggtaaagg 46359
to top
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 87   tgagccaggcagctctgggtgatg 110
            ||||||||||||||||||| ||||
Sbjct: 1565 tgagccaggcagctctgggcgatg 1542
to top
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  tgcataggaggaggtaaagg 203
            ||||||||||||||||||||
Sbjct: 1656 tgcataggaggaggtaaagg 1637
to top
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   tgcataggaggaggtaaagg 203
             ||||||||||||||||||||
Sbjct: 32964 tgcataggaggaggtaaagg 32945
to top
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  agcgtgtgcagcttgctgac 79
           ||||||||||||||||||||
Sbjct: 223 agcgtgtgcagcttgctgac 242
to top
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    atgccacttttaatatctga 334
              ||||||||||||||||||||
Sbjct: 141077 atgccacttttaatatctga 141058
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    atgccacttttaatatctga 334
              ||||||||||||||||||||
Sbjct: 142583 atgccacttttaatatctga 142564
to top
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   atgccacttttaatatctga 334
             ||||||||||||||||||||
Sbjct: 95911 atgccacttttaatatctga 95930
to top
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 87   tgagccaggcagctctgggtgatg 110
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
to top
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   aatatatctctaaatatatt 410
             ||||||||||||||||||||
Sbjct: 30473 aatatatctctaaatatatt 30454
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>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 87   tgagccaggcagctctgggtgatg 110
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 279  gagcgacgacggcagctgcctttacacc 306
            |||||||||||||||| |||| ||||||
Sbjct: 5133 gagcgacgacggcagcagcctgtacacc 5160
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 363   tccaagcgattgctgggcatgttt 386
             ||||| ||||||||||||||||||
Sbjct: 41715 tccaatcgattgctgggcatgttt 41692
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   tgcataggaggaggtaaagg 203
             ||||||||||||||||||||
Sbjct: 34681 tgcataggaggaggtaaagg 34662
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>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 87   tgagccaggcagctctgggtgatg 110
            ||||||||||||||||||| ||||
Sbjct: 1659 tgagccaggcagctctgggcgatg 1636
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>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 87   tgagccaggcagctctgggtgatg 110
            ||||||||||||||||||| ||||
Sbjct: 2026 tgagccaggcagctctgggcgatg 2003
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>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 87   tgagccaggcagctctgggtgatg 110
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   tacaccttttaagcatgcca 320
             ||||||||||||||||||||
Sbjct: 78254 tacaccttttaagcatgcca 78235
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>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 87   tgagccaggcagctctgggtgatg 110
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 191 gaggaggtaaaggagcacagcaag 214
           |||||||||||||||| |||||||
Sbjct: 625 gaggaggtaaaggagcccagcaag 648
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tgcataggaggaggtaaagg 203
             ||||||||||||||||||||
Sbjct: 27736 tgcataggaggaggtaaagg 27755
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>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 45   agcaggacaatgtcaagcgtgtgcagct 72
            ||||||| ||||||||||| ||||||||
Sbjct: 2106 agcaggagaatgtcaagcgcgtgcagct 2133
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   aatatatctctaaatatatt 410
             ||||||||||||||||||||
Sbjct: 62485 aatatatctctaaatatatt 62504
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 312    agcatgccacttttaatatctgat 335
              |||||| |||||||||||||||||
Sbjct: 127852 agcatggcacttttaatatctgat 127875


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,470,883
Number of Sequences: 3902068
Number of extensions: 3470883
Number of successful extensions: 68423
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68146
Number of HSP's gapped (non-prelim): 222
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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