| Clone Name | baal1b22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009062.1| Triticum aestivum clone wds1f.pk002.a12:fis, full insert mRNA sequence Length = 1970 Score = 781 bits (394), Expect = 0.0 Identities = 511/550 (92%) Strand = Plus / Plus Query: 47 aatctgtcgtcaacattgttggcagtcgagcagtgacacagtatgcagcgaacctttctc 106 |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| Sbjct: 538 aatctgtcgtcaacattgttggcagtcgggcattgacacaatatgcagcgaacctttctc 597 Query: 107 ttctgctcgggtttggagggctattttgggcctttgctgaagcaggggacgtcaggttca 166 |||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 598 ttctgctcggcattggtgggctattttgggcctttgcagaagcaggggatgtcaggttca 657 Query: 167 tcgtgttggtgctatgtgcaatcctctgcggctatgtttatcagtgcccgccgttccgat 226 |||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 658 tcgttttggtgctatgtgcaatcctctgtggttatgtttaccagtgcccgccgttccgat 717 Query: 227 tgagttatcgtggcctaggcgaaccattgtgttttgctgcatttggcccattggctacat 286 | ||||| || ||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct: 718 taagttaccgcggcctaggcgaaccattatgttttgctgcatttggcccattggccacgt 777 Query: 287 cagctttctacttctcaaacagcagcagaagcatttcaagcgggactgcgcttctcccta 346 |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 778 cagctttctacttctcaaacagcagcagaagcatttcaagcggggctgtgcttctccctc 837 Query: 347 tcaccaaaacagtcatagcttcatcgattcttgtcgggttgacaaccacactgatactct 406 ||| |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 838 tcagcaaaacagtcgtagcttcatcgattcttgttgggttgacaaccaccctgatactct 897 Query: 407 tctgcagccactttcaccagatcgacggagacagggctgtcggaaagatgtctcccctgg 466 |||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||| Sbjct: 898 tctgcagccactttcatcagattgacggagatagggctgttggaaagatgtctcccctgg 957 Query: 467 taagaatcggcaccaaaacaggctcgacagtagtaacgcttgcgatcggcgccctctacg 526 | ||||||||||||||||||||| ||||| |||| ||| ||| |||||||||||||||| Sbjct: 958 tcagaatcggcaccaaaacaggcgcgacattagtgacggttgggatcggcgccctctaca 1017 Query: 527 ctctcttggcggctttcggcataagcagatgcctcccgccatcctgcattgtccttggcg 586 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1018 ctctcttggctgctttcggcataagcagatgcctcccaccatcctgcattgtccttggcg 1077 Query: 587 ccctgactct 596 || ||||||| Sbjct: 1078 ccatgactct 1087
>ref|NM_187680.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 301 bits (152), Expect = 1e-78 Identities = 405/486 (83%), Gaps = 4/486 (0%) Strand = Plus / Plus Query: 3 gtttacgattcagnataccggtgctgataagnaacaagnaaagnaatctgtcgtcaacat 62 ||||||||||||| |||| || ||||||||| |||||| ||| ||||||| || ||||| Sbjct: 364 gtttacgattcag-atactggggctgataag-aacaag--aaggaatctgttgttaacat 419 Query: 63 tgttggcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggtttgg 122 |||||||||||| | |||| || ||||| || || ||||||| ||| |||| ||| Sbjct: 420 cgttggcagtcgaacgatgacgcaatatgctgcaaatatttctctcctgttcggatttat 479 Query: 123 agggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatg 182 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| || Sbjct: 480 ggggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctg 539 Query: 183 tgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggcct 242 ||||||| |||| |||||||||||||||||||| || |||||| | ||||| | || || Sbjct: 540 tgcaatcatctgtggctatgtttatcagtgcccaccattccgactaagttacaggggact 599 Query: 243 aggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttctc 302 ||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| Sbjct: 600 aggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttctc 659 Query: 303 aaacagcagcagaagcatttcaagcgggactgcgcttctccctatcaccaaaacagtcat 362 |||||||||||||| |||||| ||||| || || ||||||||| ||| ||||||||||| Sbjct: 660 aaacagcagcagaaacatttccagcggaacagctcttctccctctcagtaaaacagtcat 719 Query: 363 agcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccactttca 422 |||||||| ||||| || ||| |||| || || |||||||||||||||||||| ||||| Sbjct: 720 tgcttcatccattctagttgggctgacgactaccctgatactcttctgcagccattttca 779 Query: 423 ccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcaccaa 482 ||||| || ||||| | ||||| || || |||||||||||||||||||| |||||||| Sbjct: 780 tcagattgatggagatcgtgctgttgggaaaatgtctcccctggtaagaattggcaccaa 839 Query: 483 aacagg 488 |||||| Sbjct: 840 aacagg 845
>dbj|AK061907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H11, full insert sequence Length = 1704 Score = 301 bits (152), Expect = 1e-78 Identities = 405/486 (83%), Gaps = 4/486 (0%) Strand = Plus / Plus Query: 3 gtttacgattcagnataccggtgctgataagnaacaagnaaagnaatctgtcgtcaacat 62 ||||||||||||| |||| || ||||||||| |||||| ||| ||||||| || ||||| Sbjct: 417 gtttacgattcag-atactggggctgataag-aacaag--aaggaatctgttgttaacat 472 Query: 63 tgttggcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggtttgg 122 |||||||||||| | |||| || ||||| || || ||||||| ||| |||| ||| Sbjct: 473 cgttggcagtcgaacgatgacgcaatatgctgcaaatatttctctcctgttcggatttat 532 Query: 123 agggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatg 182 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| || Sbjct: 533 ggggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctg 592 Query: 183 tgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggcct 242 ||||||| |||| |||||||||||||||||||| || |||||| | ||||| | || || Sbjct: 593 tgcaatcatctgtggctatgtttatcagtgcccaccattccgactaagttacaggggact 652 Query: 243 aggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttctc 302 ||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| Sbjct: 653 aggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttctc 712 Query: 303 aaacagcagcagaagcatttcaagcgggactgcgcttctccctatcaccaaaacagtcat 362 |||||||||||||| |||||| ||||| || || ||||||||| ||| ||||||||||| Sbjct: 713 aaacagcagcagaaacatttccagcggaacagctcttctccctctcagtaaaacagtcat 772 Query: 363 agcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccactttca 422 |||||||| ||||| || ||| |||| || || |||||||||||||||||||| ||||| Sbjct: 773 tgcttcatccattctagttgggctgacgactaccctgatactcttctgcagccattttca 832 Query: 423 ccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcaccaa 482 ||||| || ||||| | ||||| || || |||||||||||||||||||| |||||||| Sbjct: 833 tcagattgatggagatcgtgctgttgggaaaatgtctcccctggtaagaattggcaccaa 892 Query: 483 aacagg 488 |||||| Sbjct: 893 aacagg 898
>dbj|AK066332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060C07, full insert sequence Length = 1800 Score = 301 bits (152), Expect = 1e-78 Identities = 405/486 (83%), Gaps = 4/486 (0%) Strand = Plus / Plus Query: 3 gtttacgattcagnataccggtgctgataagnaacaagnaaagnaatctgtcgtcaacat 62 ||||||||||||| |||| || ||||||||| |||||| ||| ||||||| || ||||| Sbjct: 406 gtttacgattcag-atactggggctgataag-aacaag--aaggaatctgttgttaacat 461 Query: 63 tgttggcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggtttgg 122 |||||||||||| | |||| || ||||| || || ||||||| ||| |||| ||| Sbjct: 462 cgttggcagtcgaacgatgacgcaatatgctgcaaatatttctctcctgttcggatttat 521 Query: 123 agggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatg 182 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| || Sbjct: 522 ggggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctg 581 Query: 183 tgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggcct 242 ||||||| |||| |||||||||||||||||||| || |||||| | ||||| | || || Sbjct: 582 tgcaatcatctgtggctatgtttatcagtgcccaccattccgactaagttacaggggact 641 Query: 243 aggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttctc 302 ||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| Sbjct: 642 aggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttctc 701 Query: 303 aaacagcagcagaagcatttcaagcgggactgcgcttctccctatcaccaaaacagtcat 362 |||||||||||||| |||||| ||||| || || ||||||||| ||| ||||||||||| Sbjct: 702 aaacagcagcagaaacatttccagcggaacagctcttctccctctcagtaaaacagtcat 761 Query: 363 agcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccactttca 422 |||||||| ||||| || ||| |||| || || |||||||||||||||||||| ||||| Sbjct: 762 tgcttcatccattctagttgggctgacgactaccctgatactcttctgcagccattttca 821 Query: 423 ccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcaccaa 482 ||||| || ||||| | ||||| || || |||||||||||||||||||| |||||||| Sbjct: 822 tcagattgatggagatcgtgctgttgggaaaatgtctcccctggtaagaattggcaccaa 881 Query: 483 aacagg 488 |||||| Sbjct: 882 aacagg 887
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence Length = 77136 Score = 268 bits (135), Expect = 2e-68 Identities = 141/143 (98%) Strand = Plus / Plus Query: 68 gcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggtttggagggc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3522 gcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggtttggagggc 3581 Query: 128 tattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgtgcaa 187 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3582 tattttgggcctttgctgaagcaggggacgtcaggttcatggtgttggtgctatgtgcaa 3641 Query: 188 tcctctgcggctatgtttatcag 210 |||| |||||||||||||||||| Sbjct: 3642 tcctttgcggctatgtttatcag 3664 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/71 (92%), Gaps = 4/71 (5%) Strand = Plus / Plus Query: 1 acgtttacgattcagnataccggtgctgataagnaacaagnaaagnaatctgtcgtcaac 60 ||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||| Sbjct: 3361 acgtttacgattcag-ataccggtgctgataag-aacaa-caaag-aatctgtcgtcaac 3416 Query: 61 attgttggcag 71 ||||||||||| Sbjct: 3417 attgttggcag 3427 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 219 gttccgattgagttatcgtggcctaggcgaaccatt 254 ||||||||| ||||| |||||||||||||||||||| Sbjct: 3880 gttccgattaagttaccgtggcctaggcgaaccatt 3915
>gb|AY112630.1| Zea mays CL552_1 mRNA sequence Length = 1615 Score = 163 bits (82), Expect = 8e-37 Identities = 299/369 (81%), Gaps = 3/369 (0%) Strand = Plus / Plus Query: 123 agggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatg 182 ||||||| ||||||||||||| ||||| ||| |||| ||||| | |||||| | | Sbjct: 494 agggctactttgggcctttgcagaagccaaggatatcagattcattttattggtgatctc 553 Query: 183 tgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggcct 242 ||||||| |||| || |||||||| ||||| || || |||||||| || || | || || Sbjct: 554 tgcaatcttctgtggttatgtttaccagtgtcctccattccgattaagctaccaaggact 613 Query: 243 aggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttctc 302 |||||| || |||||||| ||||||||||| || ||||| || |||| || |||||||| Sbjct: 614 aggcgagccgttgtgtttcgctgcatttggtcctttggcaaccacagccttttacttctc 673 Query: 303 aaacagcagcagaagcatttcaagcgg--ga-ctgcgcttctccctatcaccaaaacagt 359 |||||||||| || | ||| ||||| || | || ||||||||| |||| |||||||| Sbjct: 674 aaacagcagcttaaatacttcgagcggaggagcggctcttctccctctcactaaaacagt 733 Query: 360 catagcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccactt 419 ||||||||||| |||| |||||| ||||||| || |||||||||||||||||||| || Sbjct: 734 tatagcttcatctgttctcgtcgggctgacaactactctgatactcttctgcagccattt 793 Query: 420 tcaccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcac 479 || |||||||| ||||| || || |||||||||||||| ||||||||||||||||| Sbjct: 794 ccatcagatcgatggagatctcgccgttggaaagatgtctcctctggtaagaatcggcac 853 Query: 480 caaaacagg 488 ||| |||| Sbjct: 854 taaagcagg 862
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 4680567 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 4680508 Query: 301 tcaaacagcagcagaagcatttc 323 |||||||||||||||| |||||| Sbjct: 4680507 tcaaacagcagcagaaacatttc 4680485 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 337 cttctccctatcaccaaaacagtcatagcttcatcgattcttgtcgggttgacaaccaca 396 ||||||||| ||| ||||||||||| |||||||| ||||| || ||| |||| || || Sbjct: 4680368 cttctccctctcagtaaaacagtcattgcttcatccattctagttgggctgacgactacc 4680309 Query: 397 ctgatactcttctgcagccactttca 422 |||||||||||||||||||| ||||| Sbjct: 4680308 ctgatactcttctgcagccattttca 4680283 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 124 gggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgt 183 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| ||| Sbjct: 4680868 gggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctgt 4680809 Query: 184 gcaatcctctgcggctatgtttatcag 210 |||||| |||| ||||||||||||||| Sbjct: 4680808 gcaatcatctgtggctatgtttatcag 4680782 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ggtaagaatcggcaccaaaacagg 488 ||||||||| |||||||||||||| Sbjct: 4680036 ggtaagaattggcaccaaaacagg 4680013
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 4680682 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 4680623 Query: 301 tcaaacagcagcagaagcatttc 323 |||||||||||||||| |||||| Sbjct: 4680622 tcaaacagcagcagaaacatttc 4680600 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 337 cttctccctatcaccaaaacagtcatagcttcatcgattcttgtcgggttgacaaccaca 396 ||||||||| ||| ||||||||||| |||||||| ||||| || ||| |||| || || Sbjct: 4680483 cttctccctctcagtaaaacagtcattgcttcatccattctagttgggctgacgactacc 4680424 Query: 397 ctgatactcttctgcagccactttca 422 |||||||||||||||||||| ||||| Sbjct: 4680423 ctgatactcttctgcagccattttca 4680398 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 124 gggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgt 183 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| ||| Sbjct: 4680983 gggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctgt 4680924 Query: 184 gcaatcctctgcggctatgtttatcag 210 |||||| |||| ||||||||||||||| Sbjct: 4680923 gcaatcatctgtggctatgtttatcag 4680897 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ggtaagaatcggcaccaaaacagg 488 ||||||||| |||||||||||||| Sbjct: 4680151 ggtaagaattggcaccaaaacagg 4680128
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 121522 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 121463 Query: 301 tcaaacagcagcagaagcatttc 323 |||||||||||||||| |||||| Sbjct: 121462 tcaaacagcagcagaaacatttc 121440 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 337 cttctccctatcaccaaaacagtcatagcttcatcgattcttgtcgggttgacaaccaca 396 ||||||||| ||| ||||||||||| |||||||| ||||| || ||| |||| || || Sbjct: 121323 cttctccctctcagtaaaacagtcattgcttcatccattctagttgggctgacgactacc 121264 Query: 397 ctgatactcttctgcagccactttca 422 |||||||||||||||||||| ||||| Sbjct: 121263 ctgatactcttctgcagccattttca 121238 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 124 gggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgt 183 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| ||| Sbjct: 121823 gggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctgt 121764 Query: 184 gcaatcctctgcggctatgtttatcag 210 |||||| |||| ||||||||||||||| Sbjct: 121763 gcaatcatctgtggctatgtttatcag 121737 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ggtaagaatcggcaccaaaacagg 488 ||||||||| |||||||||||||| Sbjct: 120991 ggtaagaattggcaccaaaacagg 120968
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199439 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 ttgctgaagcaggggacgtca 160 ||||||||||||||||||||| Sbjct: 100257 ttgctgaagcaggggacgtca 100237
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 acgcttgcgatcggcgccctc 522 ||||||||||||||||||||| Sbjct: 2714104 acgcttgcgatcggcgccctc 2714124
>gb|AF241729.2| Homo sapiens chromosome X clone RP5-817K2 map p11.4, complete sequence Length = 141582 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 47219 ctcaaacagcagcagaagca 47200
>gb|AF431601.1| Uncultured Verrucomicrobia bacterium clone S51.19PG 16S ribosomal RNA gene, partial sequence Length = 556 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tcggaaagatgtctcccctg 465 |||||||||||||||||||| Sbjct: 171 tcggaaagatgtctcccctg 152
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 cagtatgcagcgaacctttc 104 |||||||||||||||||||| Sbjct: 1305985 cagtatgcagcgaacctttc 1305966
>emb|CR352326.5| Zebrafish DNA sequence from clone CH211-105K20 in linkage group 13, complete sequence Length = 174828 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 54829 ctcaaacagcagcagaagca 54848
>gb|AC068058.12| Homo sapiens chromosome 10 clone RP11-285A18, complete sequence Length = 168862 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgtgttttgctgcatttggc 273 |||||||||||||||||||| Sbjct: 38935 tgtgttttgctgcatttggc 38954
>gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, complete sequence Length = 121054 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 66629 ctcaaacagcagcagaagca 66648
>gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq23, complete sequence Length = 187313 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 120913 ctcaaacagcagcagaagca 120894
>dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T22B15 Length = 112406 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 tttctacttctcaaacagcagcag 314 ||||| |||||||||||||||||| Sbjct: 101819 tttcttcttctcaaacagcagcag 101796
>dbj|AP002033.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F1M23 Length = 112684 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 tttctacttctcaaacagcagcag 314 ||||| |||||||||||||||||| Sbjct: 84506 tttcttcttctcaaacagcagcag 84483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,851,292 Number of Sequences: 3902068 Number of extensions: 3851292 Number of successful extensions: 68935 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68809 Number of HSP's gapped (non-prelim): 119 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)