ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal0d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRKL_MOUSE (P47941) Crk-like protein 28 7.3
2SYD_PELUB (Q4FMP8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 27 9.5
3TLE3_HUMAN (Q04726) Transducin-like enhancer protein 3 (ESG3) 27 9.5
4PMPI_CHLTR (O84882) Probable outer membrane protein pmpI precurs... 27 9.5

>CRKL_MOUSE (P47941) Crk-like protein|
          Length = 303

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +2

Query: 107 LLRQINHILHQNRGSNTTKFPES*HKNDQIILVRIPLPTIG*TQG 241
           L+R   H  H NR SN+   PE  H   Q      PLPT+  T G
Sbjct: 181 LVRSSPHGKHGNRNSNSYGIPEPAHAYAQ-PQTTTPLPTVASTPG 224



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>SYD_PELUB (Q4FMP8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 594

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 256 PDKVNPLGLTYCWKRNPHQYDLIILVSGFRK 164
           P ++NP G  Y   + P Q+  +I+VSGF K
Sbjct: 183 PSRLNP-GKFYALPQAPQQFKQLIMVSGFDK 212



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>TLE3_HUMAN (Q04726) Transducin-like enhancer protein 3 (ESG3)|
          Length = 772

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 97  IVFSASSNQSHLTSEQRKQHNQVS*ILTQE*SNHIGEDSSSNNRLNP 237
           +   A  +Q+HLT +  K H+++         +H   +SS+NN ++P
Sbjct: 167 LALGALGSQAHLTVKDEKNHHEL---------DHRERESSANNSVSP 204



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>PMPI_CHLTR (O84882) Probable outer membrane protein pmpI precursor|
           (Polymorphic membrane protein I)
          Length = 878

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 11  LRCDHVNLCIICCKLAGLQSSRTTKDPSPSSSLL-RQINHIL 133
           +R DH+N C +C  +    +    +DP   ++LL +  NH++
Sbjct: 1   MRPDHMNFCCLCAAILSSTAVLFGQDPLGETALLTKNPNHVV 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,918,860
Number of Sequences: 219361
Number of extensions: 799219
Number of successful extensions: 1702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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