ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal0c12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 2 ggaagatgaaaatgctgacaacggcggcatcgtttgtcaattcacgtttacatgcagtta 61 ||||| |||||||||||| ||| ||| |||| ||||||||||| ||||| |||||||||| Sbjct: 78392 ggaagttgaaaatgctgagaacagcgtcatcatttgtcaattcccgtttgcatgcagtta 78333 Query: 62 aagcccagaccctggtgattgctag 86 |||| ||||| ||||| ||||||| Sbjct: 78332 aagcgcagactttggtgcttgctag 78308 Score = 48.1 bits (24), Expect = 0.026 Identities = 57/68 (83%) Strand = Plus / Minus Query: 94 gatgaactgttgccaagccgcgacgaggctgaaagactacatggcgcattaaagaaatgc 153 ||||||||| | |||||||| || || |||||||| |||| || ||| || |||||||| Sbjct: 78136 gatgaactgctaccaagccgagaagaagctgaaaggctacgtgacgctctagagaaatgc 78077 Query: 154 agaatccg 161 |||||||| Sbjct: 78076 agaatccg 78069 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 430 gttgggtaccacatgctcatggggtttgagct 461 ||||||||||||||||| ||||||||||||| Sbjct: 77370 gttgggtaccacatgctgttggggtttgagct 77339
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 2 ggaagatgaaaatgctgacaacggcggcatcgtttgtcaattcacgtttacatgcagtta 61 ||||| |||||||||||| ||| ||| |||| ||||||||||| ||||| |||||||||| Sbjct: 19482985 ggaagttgaaaatgctgagaacagcgtcatcatttgtcaattcccgtttgcatgcagtta 19482926 Query: 62 aagcccagaccctggtgattgctag 86 |||| ||||| ||||| ||||||| Sbjct: 19482925 aagcgcagactttggtgcttgctag 19482901 Score = 48.1 bits (24), Expect = 0.026 Identities = 57/68 (83%) Strand = Plus / Minus Query: 94 gatgaactgttgccaagccgcgacgaggctgaaagactacatggcgcattaaagaaatgc 153 ||||||||| | |||||||| || || |||||||| |||| || ||| || |||||||| Sbjct: 19482729 gatgaactgctaccaagccgagaagaagctgaaaggctacgtgacgctctagagaaatgc 19482670 Query: 154 agaatccg 161 |||||||| Sbjct: 19482669 agaatccg 19482662 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 430 gttgggtaccacatgctcatggggtttgagct 461 ||||||||||||||||| ||||||||||||| Sbjct: 19481963 gttgggtaccacatgctgttggggtttgagct 19481932
>emb|X93470.1|MMTDGF1 M.musculus tdgf1 gene (exons 1-5) Length = 5206 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 aaggccacaaaatattgttgg 196 ||||||||||||||||||||| Sbjct: 3829 aaggccacaaaatattgttgg 3809
>gb|AC147169.2| Xenopus tropicalis clone CH216-149I15, complete sequence Length = 165948 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tgggtaccacatgctcatgg 451 |||||||||||||||||||| Sbjct: 82306 tgggtaccacatgctcatgg 82325
>gb|AC152409.8| Mus musculus chromosome 1, clone RP23-395C1, complete sequence Length = 191100 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gaagatggatttgatctagc 215 |||||||||||||||||||| Sbjct: 75200 gaagatggatttgatctagc 75181
>gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, complete sequence Length = 183554 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aggccacaaaatattgttgg 196 |||||||||||||||||||| Sbjct: 31486 aggccacaaaatattgttgg 31467
>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence Length = 130355 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agcaacaagcattaaaggat 232 |||||||||||||||||||| Sbjct: 32451 agcaacaagcattaaaggat 32470
>gb|AC007741.4| Homo sapiens BAC clone RP11-340F16 from 2, complete sequence Length = 123295 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 attgatcacaacaggctcctgaat 336 |||||||| ||||||||||||||| Sbjct: 43050 attgatcataacaggctcctgaat 43073
>gb|AC118727.7| Mus musculus chromosome 9, clone RP24-166N8, complete sequence Length = 169165 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aggccacaaaatattgttgg 196 |||||||||||||||||||| Sbjct: 155723 aggccacaaaatattgttgg 155704 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,929,482 Number of Sequences: 3902068 Number of extensions: 3929482 Number of successful extensions: 71440 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71403 Number of HSP's gapped (non-prelim): 37 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
