ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal0b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome... 123 6e-25
2gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome... 123 6e-25
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
4dbj|AK061434.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
7gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.9
8ref|XM_475062.1| Oryza sativa (japonica cultivar-group), predic... 40 6.9
9ref|XM_752437.1| Ustilago maydis 521 hypothetical protein (UM013... 40 6.9
10emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, compl... 40 6.9
11gb|AC132144.3| Mus musculus BAC clone RP23-39L19 from chromosome... 40 6.9
12gb|AC140307.3| Mus musculus BAC clone RP23-389D15 from chromosom... 40 6.9
13gb|AC129188.3| Mus musculus BAC clone RP23-446G23 from chromosom... 40 6.9
14ref|XM_537004.2| PREDICTED: Canis familiaris similar to ATP-bind... 40 6.9
15gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.9
16gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 6.9
17gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 6.9
18gb|AE005788.1| Caulobacter crescentus CB15 section 114 of 359 of... 40 6.9
19gb|AC010427.5| Homo sapiens chromosome 5 clone CTD-2198K18, comp... 40 6.9
20gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, comp... 40 6.9
21gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.9
22dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.9
23dbj|AK105679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
24dbj|AK103271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
25emb|AL805959.11| Mouse DNA sequence from clone RP23-391H10 on ch... 40 6.9
26gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9 
>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01,
              complete sequence
          Length = 151938

 Score =  123 bits (62), Expect = 6e-25
 Identities = 92/98 (93%), Gaps = 3/98 (3%)
 Strand = Plus / Minus

                                                                          
Query: 378    ccgattatcatgaactggatgaggcttgaggtggttcaagcgcaagttcatcgaagacgt 437
              ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 134312 ccgattatcatgaactggatgaggc-tgaggtggttcaagcgcaagttcgtcg-agacgt 134255

                                                    
Query: 438    atctgcagttcatgtttcacgtacctcttcttccccgg 475
              | |||||||||||| ||||| |||||||||||||||||
Sbjct: 134254 acctgcagttcatg-ttcacctacctcttcttccccgg 134218



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                          
Query: 303    gaggaggacatcgacatcctggggatcctgccgccggtggccgcgatcgccttcttctac 362
              ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| | |||
Sbjct: 134482 gaggaggacctcgacatcctggggatcctgccgacggtggccgccatcgccttcgtttac 134423

                      
Query: 363    ctcttcgt 370
              || |||||
Sbjct: 134422 ctgttcgt 134415



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                 
Query: 218    gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcagcggt 268
              ||||| |||||||||| | | | |||||||||| |||||||||||||||||
Sbjct: 134667 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcagcggt 134617
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>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0052F16, complete sequence
          Length = 162082

 Score =  123 bits (62), Expect = 6e-25
 Identities = 92/98 (93%), Gaps = 3/98 (3%)
 Strand = Plus / Minus

                                                                         
Query: 378   ccgattatcatgaactggatgaggcttgaggtggttcaagcgcaagttcatcgaagacgt 437
             ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 78308 ccgattatcatgaactggatgaggc-tgaggtggttcaagcgcaagttcgtcg-agacgt 78251

                                                   
Query: 438   atctgcagttcatgtttcacgtacctcttcttccccgg 475
             | |||||||||||| ||||| |||||||||||||||||
Sbjct: 78250 acctgcagttcatg-ttcacctacctcttcttccccgg 78214



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                         
Query: 303   gaggaggacatcgacatcctggggatcctgccgccggtggccgcgatcgccttcttctac 362
             ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| | |||
Sbjct: 78478 gaggaggacctcgacatcctggggatcctgccgacggtggccgccatcgccttcgtttac 78419

                     
Query: 363   ctcttcgt 370
             || |||||
Sbjct: 78418 ctgttcgt 78411



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 218   gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcagcggt 268
             ||||| |||||||||| | | | |||||||||| |||||||||||||||||
Sbjct: 78663 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcagcggt 78613
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  123 bits (62), Expect = 6e-25
 Identities = 92/98 (93%), Gaps = 3/98 (3%)
 Strand = Plus / Minus

                                                                            
Query: 378      ccgattatcatgaactggatgaggcttgaggtggttcaagcgcaagttcatcgaagacgt 437
                ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 16286955 ccgattatcatgaactggatgaggc-tgaggtggttcaagcgcaagttcgtcg-agacgt 16286898

                                                      
Query: 438      atctgcagttcatgtttcacgtacctcttcttccccgg 475
                | |||||||||||| ||||| |||||||||||||||||
Sbjct: 16286897 acctgcagttcatg-ttcacctacctcttcttccccgg 16286861



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                            
Query: 303      gaggaggacatcgacatcctggggatcctgccgccggtggccgcgatcgccttcttctac 362
                ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| | |||
Sbjct: 16287125 gaggaggacctcgacatcctggggatcctgccgacggtggccgccatcgccttcgtttac 16287066

                        
Query: 363      ctcttcgt 370
                || |||||
Sbjct: 16287065 ctgttcgt 16287058



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 218      gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcagcggt 268
                ||||| |||||||||| | | | |||||||||| |||||||||||||||||
Sbjct: 16287310 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcagcggt 16287260



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    gacggtgagcggggaggagg 309
              ||||||||||||||||||||
Sbjct: 187870 gacggtgagcggggaggagg 187851
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>dbj|AK061434.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A08, full
           insert sequence
          Length = 975

 Score =  123 bits (62), Expect = 6e-25
 Identities = 92/98 (93%), Gaps = 3/98 (3%)
 Strand = Plus / Plus

                                                                       
Query: 378 ccgattatcatgaactggatgaggcttgaggtggttcaagcgcaagttcatcgaagacgt 437
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 463 ccgattatcatgaactggatgaggc-tgaggtggttcaagcgcaagttcgtcg-agacgt 520

                                                 
Query: 438 atctgcagttcatgtttcacgtacctcttcttccccgg 475
           | |||||||||||| ||||| |||||||||||||||||
Sbjct: 521 acctgcagttcatg-ttcacctacctcttcttccccgg 557



 Score =  117 bits (59), Expect = 4e-23
 Identities = 130/153 (84%), Gaps = 3/153 (1%)
 Strand = Plus / Plus

                                                                       
Query: 218 gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcagcggtgcaagcccc 277
           ||||| |||||||||| | | | |||||||||| |||||||||||||||||  | |||||
Sbjct: 211 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcagcggttgaggcccc 270

                                                                       
Query: 278 ggctgctctggcgacggtgagcggggaggaggacatcgacatcctggggatcctgccgcc 337
           ||| || ||||||   ||||  || ||||||||| ||||||||||||||||||||||| |
Sbjct: 271 ggcggcgctggcg---gtgacgggcgaggaggacctcgacatcctggggatcctgccgac 327

                                            
Query: 338 ggtggccgcgatcgccttcttctacctcttcgt 370
           ||||||||| ||||||||| | ||||| |||||
Sbjct: 328 ggtggccgccatcgccttcgtttacctgttcgt 360
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 44/48 (91%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                                
Query: 406      aggtggttcaagcgcaagttcatcgaagacgtatctgcagttcatgtt 453
                ||||||||| ||||||||||| ||| ||||||| ||||||||||||||
Sbjct: 14537855 aggtggttcgagcgcaagttcgtcg-agacgtacctgcagttcatgtt 14537809
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>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 44/48 (91%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                             
Query: 406   aggtggttcaagcgcaagttcatcgaagacgtatctgcagttcatgtt 453
             ||||||||| ||||||||||| ||| ||||||| ||||||||||||||
Sbjct: 36144 aggtggttcgagcgcaagttcgtcg-agacgtacctgcagttcatgtt 36098
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    gatcctgccgccggtggccg 345
              ||||||||||||||||||||
Sbjct: 899501 gatcctgccgccggtggccg 899482
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>ref|XM_475062.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2811

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 gacggtgagcggggaggagg 309
           ||||||||||||||||||||
Sbjct: 102 gacggtgagcggggaggagg 83
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>ref|XM_752437.1| Ustilago maydis 521 hypothetical protein (UM01383.1) partial mRNA
          Length = 3903

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 72  cccgtcgcgtcctcgctgcc 91
           ||||||||||||||||||||
Sbjct: 589 cccgtcgcgtcctcgctgcc 608
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>emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, complete sequence
          Length = 76169

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ccttcttctacctcttcgtt 371
             ||||||||||||||||||||
Sbjct: 53507 ccttcttctacctcttcgtt 53488
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>gb|AC132144.3| Mus musculus BAC clone RP23-39L19 from chromosome 2, complete sequence
          Length = 233042

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    caagtccaggatcctctgcc 177
              ||||||||||||||||||||
Sbjct: 228538 caagtccaggatcctctgcc 228557
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>gb|AC140307.3| Mus musculus BAC clone RP23-389D15 from chromosome 19, complete sequence
          Length = 187731

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    gctgcagaagctggcctccg 237
              ||||||||||||||||||||
Sbjct: 170495 gctgcagaagctggcctccg 170514
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>gb|AC129188.3| Mus musculus BAC clone RP23-446G23 from chromosome 19, complete
             sequence
          Length = 175245

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   gctgcagaagctggcctccg 237
             ||||||||||||||||||||
Sbjct: 20553 gctgcagaagctggcctccg 20572
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>ref|XM_537004.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
            sub-family A member 3 (LOC479879), mRNA
          Length = 5277

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ctacctcttcgttgctcccc 378
            ||||||||||||||||||||
Sbjct: 1332 ctacctcttcgttgctcccc 1351
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 332     gccgccggtggccgcgatcg 351
               ||||||||||||||||||||
Sbjct: 1402450 gccgccggtggccgcgatcg 1402469
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 321     ctggggatcctgccgccggtggcc 344
               ||||||||||||||||||| ||||
Sbjct: 2237702 ctggggatcctgccgccgggggcc 2237679
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 321     ctggggatcctgccgccggtggcc 344
               ||||||||||||||||||| ||||
Sbjct: 1982320 ctggggatcctgccgccgggggcc 1982343
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>gb|AE005788.1| Caulobacter crescentus CB15 section 114 of 359 of the complete genome
          Length = 13332

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  gccggtggccgcgatcgcct 354
            ||||||||||||||||||||
Sbjct: 4748 gccggtggccgcgatcgcct 4729
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>gb|AC010427.5| Homo sapiens chromosome 5 clone CTD-2198K18, complete sequence
          Length = 68883

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    cctccccgtcgcgtcctcgc 87
             ||||||||||||||||||||
Sbjct: 16476 cctccccgtcgcgtcctcgc 16495
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>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence
          Length = 201464

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     cctccccgtcgcgtcctcgc 87
              ||||||||||||||||||||
Sbjct: 174624 cctccccgtcgcgtcctcgc 174643



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    cctccccgtcgcgtcctcgc 87
             ||||||||||||||||||||
Sbjct: 83234 cctccccgtcgcgtcctcgc 83253
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 329     cctgccgccggtggccgcgatcgc 352
               |||||||| |||||||||||||||
Sbjct: 1116645 cctgccgcgggtggccgcgatcgc 1116622
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      cctcatggcgcttcctcccc 74
               ||||||||||||||||||||
Sbjct: 4676923 cctcatggcgcttcctcccc 4676904
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>dbj|AK105679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B03, full
           insert sequence
          Length = 3336

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 gacggtgagcggggaggagg 309
           ||||||||||||||||||||
Sbjct: 215 gacggtgagcggggaggagg 196
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>dbj|AK103271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124H21, full
           insert sequence
          Length = 3259

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 gacggtgagcggggaggagg 309
           ||||||||||||||||||||
Sbjct: 155 gacggtgagcggggaggagg 136
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>emb|AL805959.11| Mouse DNA sequence from clone RP23-391H10 on chromosome 2, complete
             sequence
          Length = 217595

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   caagtccaggatcctctgcc 177
             ||||||||||||||||||||
Sbjct: 55097 caagtccaggatcctctgcc 55078
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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
             complete sequence
          Length = 160603

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   gacggtgagcggggaggagg 309
             ||||||||||||||||||||
Sbjct: 70054 gacggtgagcggggaggagg 70035


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,442,330
Number of Sequences: 3902068
Number of extensions: 3442330
Number of successful extensions: 66338
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65865
Number of HSP's gapped (non-prelim): 460
length of query: 509
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 487
effective length of database: 17,147,199,772
effective search space: 8350686288964
effective search space used: 8350686288964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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