| Clone Name | rbasdk01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10 Length = 87503 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 469 tgaaaaagaagatattcaaatatttgttgt 498 |||||||||||||||||||||||| ||||| Sbjct: 2448 tgaaaaagaagatattcaaatattagttgt 2477
>ref|XM_632930.1| Dictyostelium discoideum hypothetical protein (DDB0218761), partial mRNA Length = 3096 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Plus Query: 159 taaatctttaacatcatcaacatcat 184 |||||| ||||||||||||||||||| Sbjct: 1062 taaatcattaacatcatcaacatcat 1087
>gb|AC007239.3| Homo sapiens BAC clone RP11-83A12 from 2, complete sequence Length = 139391 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 470 gaaaaagaagatattcaaatat 491 |||||||||||||||||||||| Sbjct: 17463 gaaaaagaagatattcaaatat 17484
>emb|Z92777.1|CEC17H1 Caenorhabditis elegans Cosmid C17H1, complete sequence Length = 37261 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 566 ttgttcttgctaattgtaactt 587 |||||||||||||||||||||| Sbjct: 31243 ttgttcttgctaattgtaactt 31264 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 566 ttgttcttgctaattgtaactt 587 |||||||||||||||||||||| Sbjct: 11176 ttgttcttgctaattgtaactt 11197 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 567 tgttcttgctaattgtaactt 587 ||||||||||||||||||||| Sbjct: 33960 tgttcttgctaattgtaactt 33980
>ref|XM_640467.1| Dictyostelium discoideum hypothetical protein (DDB0168382), partial mRNA Length = 8103 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 609 tggattcaatcatcgaattcaaatt 633 |||||||||||||| |||||||||| Sbjct: 2422 tggattcaatcatcaaattcaaatt 2446
>gb|AC157491.12| Mus musculus chromosome 8, clone RP24-289G15, complete sequence Length = 168377 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 685 tttcaagtttttgaagttaga 705 ||||||||||||||||||||| Sbjct: 70116 tttcaagtttttgaagttaga 70136
>gb|AC104964.12| Homo sapiens chromosome 8, clone RP11-981G7, complete sequence Length = 212226 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aatttgaacatagatacacag 28 ||||||||||||||||||||| Sbjct: 204328 aatttgaacatagatacacag 204308
>emb|AJ832111.1| Themira arctica mitochondrial partial coi gene for cytochrome oxidase subunit I Length = 1510 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ctggagttgttcttgctaatt 580 ||||||||||||||||||||| Sbjct: 1042 ctggagttgttcttgctaatt 1062
>gb|AF417730.1| Ochlerotatus triseriatus cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 903 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ctggagttgttcttgctaatt 580 ||||||||||||||||||||| Sbjct: 437 ctggagttgttcttgctaatt 457
>emb|AL583841.16| Human DNA sequence from clone RP11-556L2 on chromosome 9 Contains part of the ROR2 gene for receptor tyrosine kinase-like orphan receptor, complete sequence Length = 192799 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 533 ttttctgcattttctttaagatgta 557 ||||||||||||||||||| ||||| Sbjct: 178569 ttttctgcattttctttaatatgta 178545
>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12 Contains three novel genes, the 3' end of the LHX2 gene for LIM homeobox protein 2 and four CpG islands, complete sequence Length = 221887 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 tgaaggccagttgagttgttggcaa 245 |||||| |||||||||||||||||| Sbjct: 135706 tgaaggacagttgagttgttggcaa 135730
>gb|AF187145.1| Arixyleborus medius cytochrome oxidase I gene, partial cds; mitochondrial gene for mitochondrial product Length = 1179 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ctggagttgttcttgctaatt 580 ||||||||||||||||||||| Sbjct: 788 ctggagttgttcttgctaatt 808
>gb|AF348838.1| Coloceras laticlypeatus cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 383 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ctggagttgttcttgctaatt 580 ||||||||||||||||||||| Sbjct: 341 ctggagttgttcttgctaatt 361
>gb|AF278543.1|AF278543 Acalymma blandulum cytochrome oxidase subunit I (COI) gene, partial cds; and tRNA-Leu gene, partial sequence; mitochondrial genes for mitochondrial products Length = 1341 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ctggagttgttcttgctaatt 580 ||||||||||||||||||||| Sbjct: 836 ctggagttgttcttgctaatt 856
>gb|AF278652.1|AF278652 Auricotes rotundus cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 383 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ctggagttgttcttgctaatt 580 ||||||||||||||||||||| Sbjct: 341 ctggagttgttcttgctaatt 361
>gb|AF253033.1|AF253033 Aedes mariae isolate mar 2 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 763 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ctggagttgttcttgctaatt 580 ||||||||||||||||||||| Sbjct: 299 ctggagttgttcttgctaatt 319
>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence Length = 256879 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 609 tggattcaatcatcgaattcaaatt 633 |||||||||||||| |||||||||| Sbjct: 67329 tggattcaatcatcaaattcaaatt 67353 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,018,915 Number of Sequences: 3902068 Number of extensions: 8018915 Number of successful extensions: 167765 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 167726 Number of HSP's gapped (non-prelim): 39 length of query: 739 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 716 effective length of database: 17,143,297,704 effective search space: 12274601156064 effective search space used: 12274601156064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)