ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdj08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131P13, full insert sequence Length = 1515 Score = 488 bits (246), Expect = e-134 Identities = 390/438 (89%) Strand = Plus / Minus Query: 299 aggattgacagagagaatggtgcgatggcgatattgaatgttgaggatccaaccttgtca 358 ||||||||||||||||||||||| || |||| ||||||| | || || ||| | ||||| Sbjct: 1051 aggattgacagagagaatggtgcaattgcgacattgaatatagacgacccagctttgtcg 992 Query: 359 atgtgcttcatctcaaaatctccttccattctcccatttggcgtgtttagtgggcatgca 418 |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| Sbjct: 991 atgtgcttcatctcaaaatcaccttccattctcccatttggtgtgtttaatgggcatgca 932 Query: 419 gatgagtactcaaaaccagtctttgggaatattacaggttgctctcccactacaccaaca 478 ||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| ||| Sbjct: 931 gatgagtactcaaaaccagtccttggaaatatgacaggttgctctcccacaacacctaca 872 Query: 479 ccccaaacattctctgtccttccattcgcatcggtgacaatccagtgtcgtctgagaagc 538 ||||||| ||||| ||||||||||| ||||| ||||||||||| |||| |||||||||| Sbjct: 871 ccccaaatgttctccgtccttccatttgcatcagtgacaatccaatgtcttctgagaagc 812 Query: 539 tgtacagcacgttgagaattatttgtaattctgattctgtaggcaaaaaagaatttcccc 598 || |||| || |||||||||||||| |||||||||||||||||||| ||||| | ||| Sbjct: 811 tgaacagggcgctgagaattatttgtgattctgattctgtaggcaaagaagaactggccc 752 Query: 599 tttaagggttggctccggctttcaatatagacactcctgacttgtacccttatccccaga 658 || || || |||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 751 ttcaaaggctggctccggctttcaatataaacactcctgacttgaactctaatccccagg 692 Query: 659 gttgtagcatcactagaacatttgaggagggagtgcggagccaaaatcatcagttcatct 718 || |||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||| Sbjct: 691 gtagtagcatcactagaacattttaggagggcgtgtggagccaaaatcttcagttcatct 632 Query: 719 ctgtacttggcagcatcc 736 |||||||| ||||||||| Sbjct: 631 ctgtacttagcagcatcc 614
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 167 bits (84), Expect = 6e-38 Identities = 147/168 (87%) Strand = Plus / Plus Query: 488 ttctctgtccttccattcgcatcggtgacaatccagtgtcgtctgagaagctgtacagca 547 ||||| ||||||||||| ||||| ||||||||||| |||| |||||||||||| |||| Sbjct: 72022 ttctccgtccttccatttgcatcagtgacaatccaatgtcttctgagaagctgaacaggg 72081 Query: 548 cgttgagaattatttgtaattctgattctgtaggcaaaaaagaatttcccctttaagggt 607 || |||||||||||||| |||||||||||||||||||| ||||| | ||||| || || Sbjct: 72082 cgctgagaattatttgtgattctgattctgtaggcaaagaagaactggcccttcaaaggc 72141 Query: 608 tggctccggctttcaatatagacactcctgacttgtacccttatcccc 655 |||||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 72142 tggctccggctttcaatataaacactcctgacttgaactctaatcccc 72189 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 384 ccattctcccatttggcgtgtttagtgggcatgcagatgagtactcaaaaccagtctttg 443 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 71838 ccattctcccatttggtgtgtttaatgggcatgcagatgagtactcaaaaccagtccttg 71897 Query: 444 ggaatattacaggttgctctcccactacaccaacacccc 482 | ||||| ||||||||||||||||| ||||| ||||||| Sbjct: 71898 gaaatatgacaggttgctctcccacaacacctacacccc 71936 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 662 gtagcatcactagaacatttgaggagggagtgcggagccaaaatcatcagttcatctctg 721 |||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||| Sbjct: 72711 gtagcatcactagaacattttaggagggcgtgtggagccaaaatcttcagttcatctctg 72770 Query: 722 tacttggcagcatcc 736 ||||| ||||||||| Sbjct: 72771 tacttagcagcatcc 72785 Score = 93.7 bits (47), Expect = 8e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 299 aggattgacagagagaatggtgcgatggcgatattgaatgttgaggatccaaccttgtca 358 ||||||||||||||||||||||| || |||| ||||||||| || || ||| | ||||| Sbjct: 71442 aggattgacagagagaatggtgcaattgcgacattgaatgtagacgacccagctttgtcg 71501 Query: 359 atgtgcttcatctcaaaatctccttcc 385 |||||||||||||||||||| |||||| Sbjct: 71502 atgtgcttcatctcaaaatcaccttcc 71528
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 167 bits (84), Expect = 6e-38 Identities = 147/168 (87%) Strand = Plus / Plus Query: 488 ttctctgtccttccattcgcatcggtgacaatccagtgtcgtctgagaagctgtacagca 547 ||||| ||||||||||| ||||| ||||||||||| |||| |||||||||||| |||| Sbjct: 4185543 ttctccgtccttccatttgcatcagtgacaatccaatgtcttctgagaagctgaacaggg 4185602 Query: 548 cgttgagaattatttgtaattctgattctgtaggcaaaaaagaatttcccctttaagggt 607 || |||||||||||||| |||||||||||||||||||| ||||| | ||||| || || Sbjct: 4185603 cgctgagaattatttgtgattctgattctgtaggcaaagaagaactggcccttcaaaggc 4185662 Query: 608 tggctccggctttcaatatagacactcctgacttgtacccttatcccc 655 |||||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 4185663 tggctccggctttcaatataaacactcctgacttgaactctaatcccc 4185710 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 384 ccattctcccatttggcgtgtttagtgggcatgcagatgagtactcaaaaccagtctttg 443 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 4185359 ccattctcccatttggtgtgtttaatgggcatgcagatgagtactcaaaaccagtccttg 4185418 Query: 444 ggaatattacaggttgctctcccactacaccaacacccc 482 | ||||| ||||||||||||||||| ||||| ||||||| Sbjct: 4185419 gaaatatgacaggttgctctcccacaacacctacacccc 4185457 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 662 gtagcatcactagaacatttgaggagggagtgcggagccaaaatcatcagttcatctctg 721 |||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||| Sbjct: 4186232 gtagcatcactagaacattttaggagggcgtgtggagccaaaatcttcagttcatctctg 4186291 Query: 722 tacttggcagcatcc 736 ||||| ||||||||| Sbjct: 4186292 tacttagcagcatcc 4186306 Score = 93.7 bits (47), Expect = 8e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 299 aggattgacagagagaatggtgcgatggcgatattgaatgttgaggatccaaccttgtca 358 ||||||||||||||||||||||| || |||| ||||||||| || || ||| | ||||| Sbjct: 4184963 aggattgacagagagaatggtgcaattgcgacattgaatgtagacgacccagctttgtcg 4185022 Query: 359 atgtgcttcatctcaaaatctccttcc 385 |||||||||||||||||||| |||||| Sbjct: 4185023 atgtgcttcatctcaaaatcaccttcc 4185049
>emb|AL355075.6|CNS05TC9 Human chromosome 14 DNA sequence BAC R-203M5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 204654 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 510 cggtgacaatccagtgtcgtctgagaagc 538 |||||||||||||||||| |||||||||| Sbjct: 74830 cggtgacaatccagtgtcctctgagaagc 74802
>emb|AL606537.10| Human DNA sequence from clone RP11-53A1 on chromosome 1 Contains the 3' end of the PROX1 gene for prospero-related homeobox protein 1, complete sequence Length = 116821 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 376 atctccttccattctcccattt 397 |||||||||||||||||||||| Sbjct: 111799 atctccttccattctcccattt 111778
>gb|AC113450.20| Mus musculus chromosome 7, clone RP24-360B13, complete sequence Length = 127454 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 tttgtaattctgattctgtag 580 ||||||||||||||||||||| Sbjct: 56392 tttgtaattctgattctgtag 56372
>gb|AC162285.6| Mus musculus chromosome 7, clone RP23-312O8, complete sequence Length = 190344 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 tttgtaattctgattctgtag 580 ||||||||||||||||||||| Sbjct: 74531 tttgtaattctgattctgtag 74511
>emb|AL138889.9| Human DNA sequence from clone RP3-468B3 on chromosome 6 Contains the 5' end of the MLN gene for motilin, part of a novel gene and a CpG island, complete sequence Length = 136886 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 376 atctccttccattctcccatttggc 400 |||||| |||||||||||||||||| Sbjct: 20389 atctccctccattctcccatttggc 20365
>emb|AL611951.11| Mouse DNA sequence from clone RP23-265O1 on chromosome 13 Contains a novel gene, complete sequence Length = 191715 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 aaaatctccttccattctccc 393 ||||||||||||||||||||| Sbjct: 166812 aaaatctccttccattctccc 166792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,019,330 Number of Sequences: 3902068 Number of extensions: 7019330 Number of successful extensions: 134978 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134910 Number of HSP's gapped (non-prelim): 68 length of query: 737 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 714 effective length of database: 17,143,297,704 effective search space: 12240314560656 effective search space used: 12240314560656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
