ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdj04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMGO1_MOUSE (Q80ZD8) Amphoterin-induced protein 1 precursor (Ali... 33 0.93
2AMGO1_RAT (Q80ZD7) Amphoterin-induced protein 1 precursor (Alivi... 30 4.6
3ADPGK_MOUSE (Q8VDL4) ADP-dependent glucokinase (EC 2.7.1.147) (A... 30 4.6
4COBS_PSEPK (Q88M93) Cobalamin synthase (EC 2.-.-.-) 30 6.0
5CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingo... 30 7.9

>AMGO1_MOUSE (Q80ZD8) Amphoterin-induced protein 1 precursor (Alivin-2)|
          Length = 492

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +3

Query: 30  RRGDLTFP-------GIYTCPSMGALQTWSSSADLQIYNLTKMGENNGRRHIFT 170
           R GDL F        G+YTC +MG     + S +L++YN T  G ++     +T
Sbjct: 321 RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYT 374



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>AMGO1_RAT (Q80ZD7) Amphoterin-induced protein 1 precursor (Alivin-2)|
          Length = 493

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 54  GIYTCPSMGALQTWSSSADLQIYNLTKMGENNGRRHIFT 170
           G+YTC +MG     + S +L++YN T  G ++     +T
Sbjct: 337 GVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYT 375



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>ADPGK_MOUSE (Q8VDL4) ADP-dependent glucokinase (EC 2.7.1.147) (ADPGK) (ADP-GK)|
          Length = 496

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 19  SCQEEEETSLFPEYTLAHQWGPYK 90
           S QEE+E  L  EY    +WGP+K
Sbjct: 199 SLQEEDEFHLILEYLAGEEWGPFK 222



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>COBS_PSEPK (Q88M93) Cobalamin synthase (EC 2.-.-.-)|
          Length = 240

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = -1

Query: 638 LRGKGEFLGILVCNHFCRPAQGLFSPLVAPKAQHDDGSLDLILVHGSGRLRLFCFFVAYQ 459
           L G+   LG+ +C  + RP  GL   L     +   G + L+ V       LFC F+   
Sbjct: 142 LIGRAAMLGLFLCTPYVRPG-GLGQALAEHMPRRAAGWVLLVCV-------LFCLFLG-- 191

Query: 458 FCWHLLLPFVEYVKVKQVKIRPVGST 381
             W +LL    +  ++ +  R +G T
Sbjct: 192 -GWSVLLALAVFAWLRHLMCRRLGGT 216



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>CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)|
           (hCERK) (Lipid kinase 4) (LK4)
          Length = 537

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
 Frame = -1

Query: 626 GEFLGILVCNHFC---RPAQGLFSPLVAPKAQHDDGSLDLILVHGSGRLRLFCFFVAY-- 462
           G+FL I   N  C   R  +GL     +P A   DGS DLIL+    R     F + +  
Sbjct: 386 GKFLAINATNMSCACRRSPRGL-----SPAAHLGDGSSDLILIRKCSRFNFLRFLIRHTN 440

Query: 461 ---QFCWHLLLPFVEYVKVKQ 408
              QF +     FVE  +VK+
Sbjct: 441 QQDQFDF----TFVEVYRVKK 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,057,393
Number of Sequences: 219361
Number of extensions: 2478189
Number of successful extensions: 6349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6346
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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