ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasdh20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 438 Score = 394 bits (199), Expect = e-106 Identities = 312/350 (89%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 429 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 370 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 403 ||| |||||||| || |||||||| | |||||||| |||||||||||| ||||||||||| Sbjct: 369 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctggtt 310 Query: 404 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 463 |||||||||||||||||| ||||||||||||||||||||||||| ||||||| || | Sbjct: 309 cttgacagccttggccattttgcggaactccttgcgcatgacagacttgtggtagaggct 250 Query: 464 cgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttctc 523 ||||||||||||||||||| || ||||||||| ||||||||||| | | | ||||| | Sbjct: 249 agcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtttccttacc 190 Query: 524 agcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 583 | |||||||| |||||||| || |||||||||||||||||||| | |||||| ||||| Sbjct: 189 actggcaggctggaccgtcacggttttcttgtttgccaggccagaatgcttgtaagagtg 130 Query: 584 gacattgtanaggttgttgggctccttgctgaactgaaccttggcgttgc 633 ||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 129 gacattgtacaggttgttgggctccttgctgaactgaaccttggcattgc 80
>gb|BT017752.1| Zea mays clone EL01N0450E02.c mRNA sequence Length = 729 Score = 299 bits (151), Expect = 6e-78 Identities = 300/350 (85%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 473 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 414 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 403 ||| || |||| || | |||||||| ||||||||||| |||||||| | |||||||| Sbjct: 413 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtt 354 Query: 404 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 463 || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct: 353 tttcacagccttggccatcttgcggaactccttgcgcatcacagacttgtggctgagctt 294 Query: 464 cgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttctc 523 ||| || ||||||||||||| | |||||| || ||||||||||||| | ||||| | Sbjct: 293 cgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttcc 234 Query: 524 agcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 583 |||||| ||||| | ||| ||||| ||||||||||| | ||||||||||||||||||||| Sbjct: 233 agcagctggctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtg 174 Query: 584 gacattgtanaggttgttgggctccttgctgaactgaaccttggcgttgc 633 | |||||| |||||||||||||||||| ||||||| |||||||| |||| Sbjct: 173 taaattgtagaggttgttgggctccttggtgaactgcaccttggcattgc 124
>gb|BT017240.1| Zea mays clone EL01N0305E06.c mRNA sequence Length = 663 Score = 299 bits (151), Expect = 6e-78 Identities = 300/350 (85%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 417 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 358 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 403 ||| || |||| || | |||||||| ||||||||||| |||||||| | |||||||| Sbjct: 357 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtt 298 Query: 404 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 463 || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct: 297 tttcacagccttggccatcttgcggaactccttgcgcatcacagacttgtggctgagctt 238 Query: 464 cgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttctc 523 ||| || ||||||||||||| | |||||| || ||||||||||||| | ||||| | Sbjct: 237 cgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttcc 178 Query: 524 agcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 583 |||||| ||||| | ||| ||||| ||||||||||| | ||||||||||||||||||||| Sbjct: 177 agcagctggctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtg 118 Query: 584 gacattgtanaggttgttgggctccttgctgaactgaaccttggcgttgc 633 | |||||| |||||||||||||||||| ||||||| |||||||| |||| Sbjct: 117 taaattgtagaggttgttgggctccttggtgaactgcaccttggcattgc 68
>gb|AY103648.1| Zea mays PCO068622 mRNA sequence Length = 954 Score = 281 bits (142), Expect = 1e-72 Identities = 299/351 (85%), Gaps = 3/351 (0%) Strand = Plus / Minus Query: 283 actgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgc 342 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 656 actgcctgttcttcttcttgacaccggacttggcaacctggaggctgcggtacaccgagc 597 Query: 343 tcagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggt 402 | || || |||||||| |||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 596 ttagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtcactaacctggt 537 Query: 403 tcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaagg 462 | || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct: 536 ttttcacagccttggccatcttgcggaactccttgcgcatcacagacttgtggctgagct 477 Query: 463 ccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttct 522 |||||| |||||||||||| | |||||| || ||||||||||||| | ||||| Sbjct: 476 tcgcaggtgcgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctt-- 419 Query: 523 cagcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagt 582 ||||| ||||| | |||||||||||||||||| |||| || |||| ||| |||||| Sbjct: 418 -tgcagctggctggatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagt 360 Query: 583 ggacattgtanaggttgttgggctccttgctgaactgaaccttggcgttgc 633 ||| ||||| |||||||| ||||||||| ||||||| |||||||| |||| Sbjct: 359 ggatgttgtagaggttgttcggctccttggtgaactgcaccttggcattgc 309
>gb|AF457940.1| Zea mays clone cho1c.pk002.j11, mRNA sequence Length = 505 Score = 260 bits (131), Expect = 5e-66 Identities = 289/341 (84%), Gaps = 1/341 (0%) Strand = Plus / Minus Query: 294 ttcttcttgacaccagacttggcaacct-ggaggctgcggtaaactgcgctcagtcttgc 352 |||||||||||||||||||||||||||| ||||||||||||| || | |||||| | | Sbjct: 460 ttcttcttgacaccagacttggcaaccttggaggctgcggtacacagagctcagcntacc 401 Query: 353 aagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggttcttgacagc 412 ||| || | |||||||| ||||||||||| |||||||| | |||||||| || ||||| Sbjct: 400 aagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtttttcacagc 341 Query: 413 cttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggccgcaggctt 472 |||||||||||||||||||||||||||||| |||| ||||||| ||| ||| || | Sbjct: 340 cttggccatcttgcggaactccttgcgcatcacagacttgtggctgagcttcgcgggtgt 281 Query: 473 gttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcagg 532 |||||||||||| | |||||| || ||||||||||||| | ||||| ||||||| || Sbjct: 280 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctgg 221 Query: 533 ctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgta 592 ||| | ||| ||||| ||||||||||| | ||||||||||||||||||||| | |||||| Sbjct: 220 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtaaattgta 161 Query: 593 naggttgttgggctccttgctgaactgaaccttggcgttgc 633 |||||||||||||||||| ||||||| |||||||| |||| Sbjct: 160 gaggttgttgggctccttggtgaactgcaccttggcattgc 120
>ref|XM_475816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 444 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 429 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 370 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 403 || || |||||||| |||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 369 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctggtt 310 Query: 404 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 309 cttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 258 Score = 139 bits (70), Expect = 1e-29 Identities = 138/161 (85%) Strand = Plus / Minus Query: 474 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 533 ||||||||||| | ||||||||||||||||||||| | | |||||| | | | ||| Sbjct: 239 ttctgcttcttggtcttggttgtggagaggaccacggccgcgtccttcacgcctgatggc 180 Query: 534 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtan 593 || | |||||| ||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 179 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtggacattgtac 120 Query: 594 aggttgttgggctccttgctgaactgaaccttggcgttgct 634 |||||||||||||||||| ||||||| |||||||| ||||| Sbjct: 119 aggttgttgggctccttggtgaactgcaccttggcattgct 79
>ref|XM_468444.1| Oryza sativa (japonica cultivar-group), mRNA Length = 444 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 429 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 370 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 403 || ||||||||||| || ||||||| || |||||||||||||||||||| |||||||| Sbjct: 369 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctggtt 310 Query: 404 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 309 cttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 258 Score = 135 bits (68), Expect = 2e-28 Identities = 139/163 (85%) Strand = Plus / Minus Query: 474 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 533 ||||||||||| | |||||| |||||||||||||||| | ||||| || | | ||| Sbjct: 239 ttctgcttcttggtcttggtcgtggagaggaccacagccgcgtcctttccacctgatggc 180 Query: 534 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtan 593 || | |||||| ||||||||||| |||| |||||||| |||||||||||| |||||||| Sbjct: 179 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtgaacattgtac 120 Query: 594 aggttgttgggctccttgctgaactgaaccttggcgttgctgt 636 |||||||||||||||||| ||||||| |||||||| ||||||| Sbjct: 119 aggttgttgggctccttggtgaactgcaccttggcattgctgt 77
>dbj|AK119884.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-G12, full insert sequence Length = 2472 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 2239 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 2180 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 403 || || |||||||| |||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 2179 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctggtt 2120 Query: 404 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 2119 cttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 2068 Score = 139 bits (70), Expect = 1e-29 Identities = 138/161 (85%) Strand = Plus / Minus Query: 474 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 533 ||||||||||| | ||||||||||||||||||||| | | |||||| | | | ||| Sbjct: 2049 ttctgcttcttggtcttggttgtggagaggaccacggccgcgtccttcacgcctgatggc 1990 Query: 534 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtan 593 || | |||||| ||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 1989 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtggacattgtac 1930 Query: 594 aggttgttgggctccttgctgaactgaaccttggcgttgct 634 |||||||||||||||||| ||||||| |||||||| ||||| Sbjct: 1929 aggttgttgggctccttggtgaactgcaccttggcattgct 1889
>dbj|AK062099.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A03, full insert sequence Length = 669 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 266 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 207 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 403 || ||||||||||| || ||||||| || |||||||||||||||||||| |||||||| Sbjct: 206 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctggtt 147 Query: 404 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 146 cttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 95 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 474 ttctgcttctttgacttggttgtggagaggaccacag 510 ||||||||||| | |||||| |||||||||||||||| Sbjct: 76 ttctgcttcttggtcttggtcgtggagaggaccacag 40
>gb|BT016863.1| Zea mays clone Contig696 mRNA sequence Length = 1007 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 283 actgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgc 342 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 192 actgcctgttcttcttcttgacaccggacttggcaacctggaggctgcggtacaccgagc 251 Query: 343 tcagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggt 402 | || || |||||||| |||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 252 ttagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtcactaacctggt 311 Query: 403 tcttgacagccttgg 417 | || |||||||||| Sbjct: 312 ttttcacagccttgg 326
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 29309050 acctggttcttgacagccttggccattttgcggaactccttgcgcatgacagacttgtgg 29308991 Query: 456 gtgaaggccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatc 515 || | ||||||||||||||||||| || ||||||||| ||||||||||| | | | Sbjct: 29308990 tagaggctagcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtt 29308931 Query: 516 tccttctcagcagcaggctgcaccgtcacagtcttcttgtttgccaggcc 565 ||||| || |||||||| |||||||| || ||||||||||||||||| Sbjct: 29308930 tccttaccactggcaggctggaccgtcacggttttcttgtttgccaggcc 29308881 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 29309860 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 29309801 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 ||| |||||||| || |||||||| | |||||||| |||||||||||| |||||||| Sbjct: 29309800 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctg 29309744 Score = 101 bits (51), Expect = 3e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 572 cttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaaccttggcgtt 631 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 29308775 cttgtaagagtggacattgtacaggttgttgggctccttgctgaactgaaccttggcatt 29308716 Query: 632 gc 633 || Sbjct: 29308715 gc 29308714
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 87913 acctggttcttgacagccttggccattttgcggaactccttgcgcatgacagacttgtgg 87854 Query: 456 gtgaaggccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatc 515 || | ||||||||||||||||||| || ||||||||| ||||||||||| | | | Sbjct: 87853 tagaggctagcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtt 87794 Query: 516 tccttctcagcagcaggctgcaccgtcacagtcttcttgtttgccaggcc 565 ||||| || |||||||| |||||||| || ||||||||||||||||| Sbjct: 87793 tccttaccactggcaggctggaccgtcacggttttcttgtttgccaggcc 87744 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 88723 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 88664 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 ||| |||||||| || |||||||| | |||||||| |||||||||||| |||||||| Sbjct: 88663 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctg 88607 Score = 101 bits (51), Expect = 3e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 572 cttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaaccttggcgtt 631 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 87638 cttgtaagagtggacattgtacaggttgttgggctccttgctgaactgaaccttggcatt 87579 Query: 632 gc 633 || Sbjct: 87578 gc 87577
>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F09 Length = 138277 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 4112 acctggttcttgacagccttggccattttgcggaactccttgcgcatgacagacttgtgg 4053 Query: 456 gtgaaggccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatc 515 || | ||||||||||||||||||| || ||||||||| ||||||||||| | | | Sbjct: 4052 tagaggctagcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtt 3993 Query: 516 tccttctcagcagcaggctgcaccgtcacagtcttcttgtttgccaggcc 565 ||||| || |||||||| |||||||| || ||||||||||||||||| Sbjct: 3992 tccttaccactggcaggctggaccgtcacggttttcttgtttgccaggcc 3943 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 4922 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 4863 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 ||| |||||||| || |||||||| | |||||||| |||||||||||| |||||||| Sbjct: 4862 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctg 4806 Score = 101 bits (51), Expect = 3e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 572 cttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaaccttggcgtt 631 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 3837 cttgtaagagtggacattgtacaggttgttgggctccttgctgaactgaaccttggcatt 3778 Query: 632 gc 633 || Sbjct: 3777 gc 3776
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Plus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 76479 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 76538 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 || || |||||||| |||||||||| |||||||||||||||||||||||| ||||| Sbjct: 76539 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctg 76595 Score = 103 bits (52), Expect = 7e-19 Identities = 66/71 (92%) Strand = Plus / Plus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| ||| Sbjct: 78499 ccagagtgcttgtaggagtggacattgtacaggttgttgggctccttggtgaactgcacc 78558 Query: 624 ttggcgttgct 634 ||||| ||||| Sbjct: 78559 ttggcattgct 78569 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 78228 acctggttcttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 78287 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 474 ttctgcttctttgacttggttgtggagaggaccac 508 ||||||||||| | ||||||||||||||||||||| Sbjct: 78306 ttctgcttcttggtcttggttgtggagaggaccac 78340
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Plus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 26695482 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 26695541 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 || || |||||||| |||||||||| |||||||||||||||||||||||| ||||| Sbjct: 26695542 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctg 26695598 Score = 103 bits (52), Expect = 7e-19 Identities = 66/71 (92%) Strand = Plus / Plus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| ||| Sbjct: 26697502 ccagagtgcttgtaggagtggacattgtacaggttgttgggctccttggtgaactgcacc 26697561 Query: 624 ttggcgttgct 634 ||||| ||||| Sbjct: 26697562 ttggcattgct 26697572 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 26697231 acctggttcttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 26697290 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 474 ttctgcttctttgacttggttgtggagaggaccac 508 ||||||||||| | ||||||||||||||||||||| Sbjct: 26697309 ttctgcttcttggtcttggttgtggagaggaccac 26697343
>dbj|AK066599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069H24, full insert sequence Length = 2403 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 2143 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 2084 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 || || |||||||| |||||||||| |||||||||||||||||||||||| ||||| Sbjct: 2083 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctg 2027 Score = 139 bits (70), Expect = 1e-29 Identities = 138/161 (85%) Strand = Plus / Minus Query: 474 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 533 ||||||||||| | ||||||||||||||||||||| | | |||||| | | | ||| Sbjct: 315 ttctgcttcttggtcttggttgtggagaggaccacggccgcgtccttcacgcctgatggc 256 Query: 534 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtan 593 || | |||||| ||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 255 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtggacattgtac 196 Query: 594 aggttgttgggctccttgctgaactgaaccttggcgttgct 634 |||||||||||||||||| ||||||| |||||||| ||||| Sbjct: 195 aggttgttgggctccttggtgaactgcaccttggcattgct 155 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 393 acctggttcttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 334
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 35275065 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 35275124 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 || ||||||||||| || ||||||| || |||||||||||||||||||| ||||| Sbjct: 35275125 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctg 35275181 Score = 99.6 bits (50), Expect = 1e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| ||| Sbjct: 35275968 ccagagtgcttgtaggagtgaacattgtacaggttgttgggctccttggtgaactgcacc 35276027 Query: 624 ttggcgttgctgt 636 ||||| ||||||| Sbjct: 35276028 ttggcattgctgt 35276040 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 35275699 acctggttcttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 35275758 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 474 ttctgcttctttgacttggttgtggagaggaccacag 510 ||||||||||| | |||||| |||||||||||||||| Sbjct: 35275777 ttctgcttcttggtcttggtcgtggagaggaccacag 35275813
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 25399 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 25458 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 || ||||||||||| || ||||||| || |||||||||||||||||||| ||||| Sbjct: 25459 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctg 25515 Score = 99.6 bits (50), Expect = 1e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| ||| Sbjct: 26302 ccagagtgcttgtaggagtgaacattgtacaggttgttgggctccttggtgaactgcacc 26361 Query: 624 ttggcgttgctgt 636 ||||| ||||||| Sbjct: 26362 ttggcattgctgt 26374 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 26033 acctggttcttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 26092 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 474 ttctgcttctttgacttggttgtggagaggaccacag 510 ||||||||||| | |||||| |||||||||||||||| Sbjct: 26111 ttctgcttcttggtcttggtcgtggagaggaccacag 26147
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 343 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 87115 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 87174 Query: 344 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 400 || ||||||||||| || ||||||| || |||||||||||||||||||| ||||| Sbjct: 87175 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctg 87231 Score = 99.6 bits (50), Expect = 1e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| ||| Sbjct: 88018 ccagagtgcttgtaggagtgaacattgtacaggttgttgggctccttggtgaactgcacc 88077 Query: 624 ttggcgttgctgt 636 ||||| ||||||| Sbjct: 88078 ttggcattgctgt 88090 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 396 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 455 |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 87749 acctggttcttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 87808 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 474 ttctgcttctttgacttggttgtggagaggaccacag 510 ||||||||||| | |||||| |||||||||||||||| Sbjct: 87827 ttctgcttcttggtcttggtcgtggagaggaccacag 87863
>gb|DQ427271.1| Sorghum propinquum locus C2782 genomic sequence Length = 724 Score = 93.7 bits (47), Expect = 7e-16 Identities = 64/70 (91%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 652 ccagagtgcttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 593 Query: 624 ttggcgttgc 633 ||||| |||| Sbjct: 592 ttggcattgc 583
>gb|DQ427270.1| Sorghum bicolor voucher PI585454 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427269.1| Sorghum bicolor voucher PI267539 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427268.1| Sorghum bicolor voucher PI267408 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427267.1| Sorghum bicolor voucher PI221607 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427266.1| Sorghum bicolor voucher PI152702 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427265.1| Sorghum bicolor voucher NSL92371 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427264.1| Sorghum bicolor voucher NSL87902 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427263.1| Sorghum bicolor voucher NSL87666 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427262.1| Sorghum bicolor voucher NSL77217 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427261.1| Sorghum bicolor voucher NSL77034 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427260.1| Sorghum bicolor voucher NSL56174 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427259.1| Sorghum bicolor voucher NSL56003 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427258.1| Sorghum bicolor voucher NSL55243 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427257.1| Sorghum bicolor voucher NSL51365 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427256.1| Sorghum bicolor voucher NSL51030 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427255.1| Sorghum bicolor voucher NSL50875 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>gb|DQ427254.1| Sorghum bicolor voucher BTx623 locus C2782 genomic sequence Length = 708 Score = 77.8 bits (39), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 624 tt 625 || Sbjct: 574 tt 573
>ref|NM_127531.2| Arabidopsis thaliana structural constituent of ribosome AT2G19730 transcript variant AT2G19730.1 mRNA, complete cds Length = 717 Score = 69.9 bits (35), Expect = 1e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| |||||| Sbjct: 232 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 173 Query: 600 ttgggctccttgctgaactgaacctt 625 || | |||||||||||| |||||||| Sbjct: 172 ttagtctccttgctgaattgaacctt 147 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 ||||||| ||||||||||||||||| Sbjct: 402 tcaagtccggcctgtagtagttgtc 378
>ref|NM_001036297.1| Arabidopsis thaliana structural constituent of ribosome AT2G19730 transcript variant AT2G19730.2 mRNA, complete cds Length = 721 Score = 69.9 bits (35), Expect = 1e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| |||||| Sbjct: 236 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 177 Query: 600 ttgggctccttgctgaactgaacctt 625 || | |||||||||||| |||||||| Sbjct: 176 ttagtctccttgctgaattgaacctt 151 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 ||||||| ||||||||||||||||| Sbjct: 406 tcaagtccggcctgtagtagttgtc 382
>gb|AY079378.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730) mRNA, complete cds Length = 463 Score = 69.9 bits (35), Expect = 1e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| |||||| Sbjct: 173 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 114 Query: 600 ttgggctccttgctgaactgaacctt 625 || | |||||||||||| |||||||| Sbjct: 113 ttagtctccttgctgaattgaacctt 88 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 ||||||| ||||||||||||||||| Sbjct: 343 tcaagtccggcctgtagtagttgtc 319
>gb|AY050769.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730) mRNA, complete cds Length = 647 Score = 69.9 bits (35), Expect = 1e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| |||||| Sbjct: 232 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 173 Query: 600 ttgggctccttgctgaactgaacctt 625 || | |||||||||||| |||||||| Sbjct: 172 ttagtctccttgctgaattgaacctt 147 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 ||||||| ||||||||||||||||| Sbjct: 402 tcaagtccggcctgtagtagttgtc 378
>emb|BX820934.1|CNS0A8QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZG10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 695 Score = 69.9 bits (35), Expect = 1e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| |||||| Sbjct: 218 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 159 Query: 600 ttgggctccttgctgaactgaacctt 625 || | |||||||||||| |||||||| Sbjct: 158 ttagtctccttgctgaattgaacctt 133 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 ||||||| ||||||||||||||||| Sbjct: 388 tcaagtccggcctgtagtagttgtc 364
>emb|BX821549.1|CNS0A8EE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZB05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 701 Score = 69.9 bits (35), Expect = 1e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| |||||| Sbjct: 220 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 161 Query: 600 ttgggctccttgctgaactgaacctt 625 || | |||||||||||| |||||||| Sbjct: 160 ttagtctccttgctgaattgaacctt 135 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 ||||||| ||||||||||||||||| Sbjct: 390 tcaagtccggcctgtagtagttgtc 366
>gb|DQ200370.1| Solanum tuberosum clone 057E05 unknown mRNA Length = 611 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 583 ||||| |||||||||||||| |||||||||| |||||||||||| Sbjct: 194 gtcactgtcttcttgtttgctaggccagagtgcttgtaggagtg 151 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 375 ggcctgtagtagttgtcactgacctggttcttgacagccttggccatcttgcggaactcc 434 ||||||||||||||||| | |||||||| | |||||||||||||| ||||||||||| Sbjct: 356 ggcctgtagtagttgtctccaacctggtttgttacagccttggccattctgcggaactcc 297 Query: 435 tt 436 || Sbjct: 296 tt 295
>gb|DQ200369.1| Solanum tuberosum clone 057D08 unknown mRNA Length = 610 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 583 ||||| |||||||||||||| |||||||||| |||||||||||| Sbjct: 193 gtcactgtcttcttgtttgctaggccagagtgcttgtaggagtg 150 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 375 ggcctgtagtagttgtcactgacctggttcttgacagccttggccatcttgcggaactcc 434 ||||||||||||||||| | |||||||| | |||||||||||||| ||||||||||| Sbjct: 355 ggcctgtagtagttgtctccaacctggtttgttacagccttggccattctgcggaactcc 296 Query: 435 tt 436 || Sbjct: 295 tt 294
>gb|BT013039.1| Lycopersicon esculentum clone 114289R, mRNA sequence Length = 708 Score = 56.0 bits (28), Expect = 1e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 543 acagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttgttg 602 ||||| ||||||||||| |||||||||| |||||| ||||| | |||| | || ||||| Sbjct: 216 acagttttcttgtttgctaggccagagtgcttgtaagagtgaagattgcaaagattgtta 157 Query: 603 ggctccttgct 613 ||||| ||||| Sbjct: 156 ggctctttgct 146 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 284 ctgcctgttcttcttcttgacaccagacttggcaacc 320 |||||||||| ||||||| || ||||||||||||||| Sbjct: 472 ctgcctgttcctcttcttcacgccagacttggcaacc 436
>ref|NM_119086.3| Arabidopsis thaliana structural constituent of ribosome AT4G29410 mRNA, complete cds Length = 709 Score = 52.0 bits (26), Expect = 0.002 Identities = 73/89 (82%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| |||||| Sbjct: 255 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 196 Query: 600 ttgggctccttgctgaactgaaccttggc 628 ||| ||| |||||||||||||||||||| Sbjct: 195 ttgctctctttgctgaactgaaccttggc 167 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 425 tcaaatcaggcctgtagtagttgtc 401
>gb|BT000047.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete cds Length = 556 Score = 52.0 bits (26), Expect = 0.002 Identities = 73/89 (82%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| |||||| Sbjct: 173 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 114 Query: 600 ttgggctccttgctgaactgaaccttggc 628 ||| ||| |||||||||||||||||||| Sbjct: 113 ttgctctctttgctgaactgaaccttggc 85 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 343 tcaaatcaggcctgtagtagttgtc 319
>gb|AY072328.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete cds Length = 660 Score = 52.0 bits (26), Expect = 0.002 Identities = 73/89 (82%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| |||||| Sbjct: 250 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 191 Query: 600 ttgggctccttgctgaactgaaccttggc 628 ||| ||| |||||||||||||||||||| Sbjct: 190 ttgctctctttgctgaactgaaccttggc 162 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 420 tcaaatcaggcctgtagtagttgtc 396
>emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL95ZC06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 675 Score = 52.0 bits (26), Expect = 0.002 Identities = 73/89 (82%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| |||||| Sbjct: 240 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 181 Query: 600 ttgggctccttgctgaactgaaccttggc 628 ||| ||| |||||||||||||||||||| Sbjct: 180 ttgctctctttgctgaactgaaccttggc 152 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 410 tcaaatcaggcctgtagtagttgtc 386
>emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL22ZH11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 691 Score = 52.0 bits (26), Expect = 0.002 Identities = 73/89 (82%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| |||||| Sbjct: 237 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 178 Query: 600 ttgggctccttgctgaactgaaccttggc 628 ||| ||| |||||||||||||||||||| Sbjct: 177 ttgctctctttgctgaactgaaccttggc 149 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 407 tcaaatcaggcctgtagtagttgtc 383
>gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, complete sequence Length = 665 Score = 52.0 bits (26), Expect = 0.002 Identities = 73/89 (82%) Strand = Plus / Minus Query: 540 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtanaggttg 599 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| |||||| Sbjct: 255 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 196 Query: 600 ttgggctccttgctgaactgaaccttggc 628 ||| ||| |||||||||||||||||||| Sbjct: 195 ttgctctctttgctgaactgaaccttggc 167 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 425 tcaaatcaggcctgtagtagttgtc 401
>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71 Length = 200001 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 594 aggttgttgggctccttgctgaactgaaccttggc 628 ||||||||| ||| |||||||||||||||||||| Sbjct: 4497 aggttgttgctctctttgctgaactgaaccttggc 4531 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 3179 tcaaatcaggcctgtagtagttgtc 3203
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 594 aggttgttgggctccttgctgaactgaaccttggc 628 ||||||||| ||| |||||||||||||||||||| Sbjct: 197926 aggttgttgctctctttgctgaactgaaccttggc 197960 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 367 tcaagtcaggcctgtagtagttgtc 391 |||| |||||||||||||||||||| Sbjct: 196608 tcaaatcaggcctgtagtagttgtc 196632
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence Length = 126386 Score = 46.1 bits (23), Expect = 0.14 Identities = 52/62 (83%) Strand = Plus / Plus Query: 564 ccagagtacttgtaggagtggacattgtanaggttgttgggctccttgctgaactgaacc 623 ||||||| |||||| ||||| || ||| |||||||| | |||||||||||| |||||| Sbjct: 111495 ccagagtgcttgtaagagtgaacgttggtgaggttgttagtctccttgctgaattgaacc 111554 Query: 624 tt 625 || Sbjct: 111555 tt 111556 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 367 tcaagtcaggcctgtagtagttgtc 391 ||||||| ||||||||||||||||| Sbjct: 110489 tcaagtccggcctgtagtagttgtc 110513 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 467 aggcttgttctgcttctttgacttggttgtgg 498 |||||||||||||||||| | |||||| |||| Sbjct: 110931 aggcttgttctgcttcttggtcttggtggtgg 110962
>emb|AL034380.26|HS50O24 Human DNA sequence from clone RP1-50O24 on chromosome 1p35.1-35.3 Contains the 3' end of the SMARCF1 gene for SWI/SNF related, matrix associated, actin dependent regulator of chromatin (subfamily f, member 1), a novel gene (FLJ20477), the ZDHHC18 gene for zinc finger, DHHC domain containing 18, the SFN gene for stratifin, two novel genes, a novel gene (FLJ10349), the 3' end of a novel gene (FLJ12455) and two CpG islands, complete sequence Length = 157435 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 369 aagtcaggcctgtagtagttgt 390 |||||||||||||||||||||| Sbjct: 89352 aagtcaggcctgtagtagttgt 89373
>ref|XM_625812.1| Cryptosporidium parvum Iowa II putative double-stranded DNA-binding domain, small conserved protein (cgd4_2220), partial mRNA Length = 393 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 aagcagctcaagaataaagatc 76 |||||||||||||||||||||| Sbjct: 330 aagcagctcaagaataaagatc 351
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 467 aggcttgttctgcttctttgac 488 |||||||||||||||||||||| Sbjct: 765882 aggcttgttctgcttctttgac 765861
>emb|AL353685.23| Human DNA sequence from clone RP11-31J20 on chromosome 9 Contains part of the ABCA1 gene for ATP-binding cassette sub-family A (ABC1) member 1, complete sequence Length = 129608 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 cataaaccaacgcatccacaa 255 ||||||||||||||||||||| Sbjct: 73140 cataaaccaacgcatccacaa 73160
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 aagcagctcaagaataaagat 75 ||||||||||||||||||||| Sbjct: 100287 aagcagctcaagaataaagat 100267
>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence Length = 188519 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 acttggcaacctggaggctgc 330 ||||||||||||||||||||| Sbjct: 110381 acttggcaacctggaggctgc 110361
>gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-family A member 1 (ABCA1) and SNAP protein genes, complete cds Length = 201144 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 cataaaccaacgcatccacaa 255 ||||||||||||||||||||| Sbjct: 106420 cataaaccaacgcatccacaa 106400
>gb|AF400192.1| Spodoptera frugiperda ribosomal protein L28 mRNA, complete cds Length = 540 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 ttgttgggctccttgctgaac 617 ||||||||||||||||||||| Sbjct: 168 ttgttgggctccttgctgaac 148
>gb|AF275948.1|AF275948 Homo sapiens ABCA1 (ABCA1) gene, complete cds Length = 149034 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 cataaaccaacgcatccacaa 255 ||||||||||||||||||||| Sbjct: 73099 cataaaccaacgcatccacaa 73079
>dbj|AB180416.1| Plutella xylostella mRNA for Ribosomal protein L28, complete cds Length = 514 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 ttgttgggctccttgctgaac 617 ||||||||||||||||||||| Sbjct: 174 ttgttgggctccttgctgaac 154
>dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-813O18, complete sequence Length = 98815 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 310 acttggcaacctggaggctgc 330 ||||||||||||||||||||| Sbjct: 82205 acttggcaacctggaggctgc 82225
>gb|AC164111.4| Mus musculus BAC clone RP23-267E11 from chromosome 6, complete sequence Length = 179265 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tcatcatattcaacctccat 204 |||||||||||||||||||| Sbjct: 106726 tcatcatattcaacctccat 106745
>gb|AF177668.1| Mus musculus Irf6 (Irf6) gene, exons 2 through 6 and partial cds Length = 10579 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 469 gcttgttctgcttctttgacttggttgt 496 |||| |||||||||||||| |||||||| Sbjct: 5666 gcttcttctgcttctttgagttggttgt 5639
>gb|AC118255.32| Mus musculus chromosome 8, clone RP24-89A4, complete sequence Length = 200858 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 19032 agaacctagtgagaatactt 19051
>ref|XM_367987.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07891.4) partial mRNA Length = 1458 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 555 tttgccaggccagagtactt 574 |||||||||||||||||||| Sbjct: 1288 tttgccaggccagagtactt 1307
>gb|DQ440103.1| Aedes aegypti clone AE-439 ribosomal protein L28 mRNA, complete cds Length = 459 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 594 aggttgttgggctccttgctgaac 617 ||||||||||||||| |||||||| Sbjct: 110 aggttgttgggctccgtgctgaac 87
>gb|AC183432.1| Ornithorhynchus anatinus BAC clone OABb-35B8 from chromosome unknown, complete sequence Length = 142253 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ctagcccctcagtgcttact 285 |||||||||||||||||||| Sbjct: 112715 ctagcccctcagtgcttact 112734
>ref|XR_004076.1| PREDICTED: Mus musculus similar to interferon regulatory factor 2 binding protein 2 (LOC672960), mRNA Length = 4398 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 2761 agaacctagtgagaatactt 2780
>ref|XM_001002526.1| PREDICTED: Mus musculus interferon regulatory factor 2 binding protein 2 (Irf2bp2), mRNA Length = 4290 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 2653 agaacctagtgagaatactt 2672
>ref|XM_902821.2| PREDICTED: Mus musculus interferon regulatory factor 2 binding protein 2, transcript variant 2 (Irf2bp2), mRNA Length = 3900 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 2263 agaacctagtgagaatactt 2282
>ref|XM_284454.5| PREDICTED: Mus musculus interferon regulatory factor 2 binding protein 2, transcript variant 1 (Irf2bp2), mRNA Length = 4532 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 2895 agaacctagtgagaatactt 2914
>gb|AC111117.15| Mus musculus chromosome 1, clone RP23-214P23, complete sequence Length = 201442 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 ctccttgctgaactgaacct 624 |||||||||||||||||||| Sbjct: 139019 ctccttgctgaactgaacct 139038
>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence Length = 210092 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tcatcatattcaacctccat 204 |||||||||||||||||||| Sbjct: 24680 tcatcatattcaacctccat 24699
>emb|AL354683.12| Human DNA sequence from clone RP11-259K11 on chromosome 20, complete sequence Length = 11882 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 ttctttgacttggttgtgga 499 |||||||||||||||||||| Sbjct: 1488 ttctttgacttggttgtgga 1469
>emb|CR937652.1| Single read from an extremity of a cDNA clone made from Aedes aegypti total adult females. 3-prime end of clone KW0AAB1YJ17BBM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 640 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 594 aggttgttgggctccttgctgaac 617 ||||||||||||||| |||||||| Sbjct: 482 aggttgttgggctccgtgctgaac 505
>emb|CR937144.1| Single read from an extremity of a cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAB2YM17AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 667 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 594 aggttgttgggctccttgctgaac 617 ||||||||||||||| |||||||| Sbjct: 153 aggttgttgggctccgtgctgaac 130
>gb|AC024651.13| Homo sapiens chromosome 15, clone RP11-753A21, complete sequence Length = 212185 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 ctccatactcttagaacaaa 218 |||||||||||||||||||| Sbjct: 149114 ctccatactcttagaacaaa 149095
>dbj|AK168884.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920062H08 product:unclassifiable, full insert sequence Length = 2794 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 1161 agaacctagtgagaatactt 1180
>dbj|AK168861.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920061J23 product:unclassifiable, full insert sequence Length = 2794 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 1161 agaacctagtgagaatactt 1180
>dbj|AK163095.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530065E07 product:unclassifiable, full insert sequence Length = 990 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 141 agaacctagtgagaatactt 160
>gb|AC137157.3| Mus musculus BAC clone RP23-377M11 from chromosome 8, complete sequence Length = 187666 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 148868 agaacctagtgagaatactt 148887
>dbj|AK087491.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130305N23 product:BRAIN MY039 PROTEIN homolog [Homo sapiens], full insert sequence Length = 3248 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 1612 agaacctagtgagaatactt 1631
>dbj|AK045307.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130064H07 product:unclassifiable, full insert sequence Length = 2723 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaacctagtgagaatactt 161 |||||||||||||||||||| Sbjct: 1091 agaacctagtgagaatactt 1110
>dbj|AK037932.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130064P06 product:interferon regulatory factor 6, full insert sequence Length = 2185 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 469 gcttgttctgcttctttgacttggttgt 496 |||| |||||||||||||| |||||||| Sbjct: 963 gcttcttctgcttctttgagttggttgt 936
>emb|BX935932.2| Gallus gallus finished cDNA, clone ChEST429o3 Length = 1048 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 gctccttgctgaactgaacc 623 |||||||||||||||||||| Sbjct: 784 gctccttgctgaactgaacc 765
>emb|BX933512.2| Gallus gallus finished cDNA, clone ChEST659n17 Length = 1045 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 gctccttgctgaactgaacc 623 |||||||||||||||||||| Sbjct: 784 gctccttgctgaactgaacc 765
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 atgggtacagatatagaacc 147 |||||||||||||||||||| Sbjct: 21336875 atgggtacagatatagaacc 21336894
>gb|AC007879.4| Homo sapiens BAC clone RP11-309L6 from 2, complete sequence Length = 158841 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 cacagtcatctccttctcag 525 |||||||||||||||||||| Sbjct: 4625 cacagtcatctccttctcag 4644
>gb|AC115927.10| Mus musculus chromosome 1, clone RP24-529H22, complete sequence Length = 143911 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggtggaaatgattaagaggc 115 |||||||||||||||||||| Sbjct: 97448 ggtggaaatgattaagaggc 97467
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 atgggtacagatatagaacc 147 |||||||||||||||||||| Sbjct: 132251 atgggtacagatatagaacc 132270
>emb|AL805898.11| Mouse DNA sequence from clone RP23-432F24 on chromosome 4, complete sequence Length = 215828 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 ctccttctcagcagcaggctgcac 538 ||||||||||||||||||| |||| Sbjct: 100690 ctccttctcagcagcaggcagcac 100667
>dbj|AB028621.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUJ8 Length = 78921 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aaaaagtcggaaacataaac 241 |||||||||||||||||||| Sbjct: 55941 aaaaagtcggaaacataaac 55922
>dbj|AP003080.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-223E3, complete sequence Length = 151349 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 aaaccaacgcatccacaaaataag 261 ||||||| |||||||||||||||| Sbjct: 55872 aaaccaatgcatccacaaaataag 55895
>dbj|AP003079.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-141E21, complete sequence Length = 166045 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 aaaccaacgcatccacaaaataag 261 ||||||| |||||||||||||||| Sbjct: 153780 aaaccaatgcatccacaaaataag 153803
>gb|AF031241.1|AF031241 Glycine max endoplasmic reticulum HSC70-cognate binding protein precursor (BIP) mRNA, complete cds Length = 2180 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ttgtcactgacctggttctt 406 |||||||||||||||||||| Sbjct: 1792 ttgtcactgacctggttctt 1773
>emb|AL365322.10| Mouse DNA sequence from clone RP23-282D4 on chromosome 1, complete sequence Length = 259487 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 469 gcttgttctgcttctttgacttggttgt 496 |||| |||||||||||||| |||||||| Sbjct: 71130 gcttcttctgcttctttgagttggttgt 71157
>emb|AL732546.13| Mouse DNA sequence from clone RP23-264D16 on chromosome 2, complete sequence Length = 233321 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cacatatacccttcctataa 23 |||||||||||||||||||| Sbjct: 15301 cacatatacccttcctataa 15320 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,612,314 Number of Sequences: 3902068 Number of extensions: 6612314 Number of successful extensions: 105010 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104692 Number of HSP's gapped (non-prelim): 308 length of query: 636 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 613 effective length of database: 17,143,297,704 effective search space: 10508841492552 effective search space used: 10508841492552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
