>DOF33_ARATH (Q8LFV3) Dof zinc finger protein DOF3.3 (AtDOF3.3) (H-protein|
           promoter-binding factor 2a)
          Length = 448

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 64/170 (37%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
 Frame = -2

Query: 664 WNFPPMVPMPGFCGPP---IPFXXXXXXXXXXXXXXPNGAWSAPWLGPSYNMXXXXXXXX 494
           WN  P +P PGF  PP   +PF                  W+ P L P  +         
Sbjct: 299 WN--PAMPPPGFYPPPGYPMPFYPY---------------WTIPMLPPHQS----SSPIS 337

Query: 493 XXXXXXXXPVLGKHPRD--SDPQGGEKAEKS----LWIPKTLRIDDPDEAAKSSIWTTLG 332
                   P LGKHPRD  S  +  E   K     + +PKTLRIDDP+EAAKSSIWTTLG
Sbjct: 338 QKCSNTNSPTLGKHPRDEGSSKKDNETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLG 397

Query: 331 IEPGER----GMFRPFQQKSG--GREQMSNAARVMQANPAAQSRFESFQE 200
           I+        GMF+ F  K+     ++  N+  V+ ANPAA SR  +F E
Sbjct: 398 IKNEAMCKAGGMFKGFDHKTKMYNNDKAENSP-VLSANPAALSRSHNFHE 446

>DOF52_ARATH (Q93ZL5) Dof zinc finger protein DOF5.2 (AtDOF5.2)|
          Length = 457

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 61/177 (34%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
 Frame = -2

Query: 652 PMVPMPGFCGPPI--PFXXXXXXXXXXXXXXPNGAWSAPWLGPSY--NMXXXXXXXXXXX 485
           P+  +P F GPP   P+              P   WS P + P    +            
Sbjct: 281 PLPKVPCFPGPPPTWPYAWNGVSWTILPFYPPPAYWSCPGVSPGAWNSFTWMPQPNSPSG 340

Query: 484 XXXXXPVLGKHPRD------------SDPQGGEKA--EKSLWIPKTLRIDDPDEAAKSSI 347
                P LGKH RD            ++  G EK+  E+ LW+PKTLRIDDP+EAAKSSI
Sbjct: 341 SNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSI 400

Query: 346 WTTLGIEPGER----GMFRPF--QQKSGGREQMSNAARVMQANPAAQSRFESFQETT 194
           W TLGI+  E     G FR    ++ S    ++      +QANPAA SR  +F E++
Sbjct: 401 WETLGIKKDENADTFGAFRSSTKEKSSLSEGRLPGRRPELQANPAALSRSANFHESS 457

>DOF55_ARATH (Q8W1E3) Dof zinc finger protein DOF5.5 (AtDOF5.5)|
          Length = 298

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 45/92 (48%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
 Frame = -2

Query: 463 LGKHPRDSDPQGGEKAEK-SLWIPKTLRIDDPDEAAKSSIWTTLGIEPGERGMFRPFQQK 287
           LGKH RD D    +K    S+ +PKTLRIDDP+EAAKSSIWTTLGI+     MF  F  K
Sbjct: 207 LGKHSRDEDETVKQKQRNGSVLVPKTLRIDDPNEAAKSSIWTTLGIK--NEVMFNGFGSK 264

Query: 286 SG---GREQMSNAARVMQANPAAQSRFESFQE 200
                  ++ +  + V+ ANPAA SR  +F E
Sbjct: 265 KEVKLSNKEETETSLVLCANPAALSRSINFHE 296

>DOF1A_ARATH (Q9SEZ3) Dof zinc finger protein DOF1.10 (AtDOF1.10) (H-protein|
           promoter-binding factor 2b)
          Length = 399

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
 Frame = -2

Query: 463 LGKHPRD------SDPQGGEKAEKSLWIPKTLRIDDPDEAAKSSIWTTLGIEPGER---- 314
           LGK  RD      +D        ++  + ++LR++   EA+KS++W+ L  +P ++    
Sbjct: 298 LGKRSRDQTEGRINDTNTTITTTRARLVSESLRMNI--EASKSAVWSKLPTKPEKKTQGF 355

Query: 313 GMFRPFQQKSGGREQ--MSNAARVMQANPAAQSRFESFQET 197
            +F  F  K        +S  +  +QANPAA SR  +F+E+
Sbjct: 356 SLFNGFDTKGNSNRSSLVSETSHSLQANPAAMSRAMNFRES 396

>CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96|
          Length = 560

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = -2

Query: 433 QGGEKAEKSLWIPKTLRI------DDPDEAAKSSIWTTLGIEPGERGMFRPFQQKSG-GR 275
           QGG  A++   +PK L        + P E  + +       EP E G   P Q KSG G 
Sbjct: 63  QGGTAADEQAKVPKELTAAEAAGEEGPGEPGRPAKPQPEPEEPAEAGAEEPVQPKSGAGP 122

Query: 274 EQMSNAARVMQANPAAQSR 218
           E++   AR  +   AA+ +
Sbjct: 123 EELDAEARAEELEQAAEGK 141

>RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 320

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 547 RSMHH*AKEKPMAKRKAALVGKEWVGHRNLASAPLVESSIE 669
           R++H   +EK + K   ALV  +W  H N+  APL+++ ++
Sbjct: 164 RALHEQLREKVVQKDYLALVRGQWQAHINVIKAPLLKNELQ 204

>THIM_ECOL6 (Q8FFY0) Hydroxyethylthiazole kinase (EC 2.7.1.50)|
           (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz
           kinase) (TH kinase)
          Length = 262

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = -3

Query: 360 QRVRSGPPWGLNPASVACLDRSSRNLV-AGSRCPTQPESCKRTLRLNPALSLSRRRRDT* 184
           Q  RS  PW L+P +V  LD   R  V   S  PT        +     ++   R  DT 
Sbjct: 88  QATRSQTPWTLDPVAVGALDYRRRFCVELLSHKPTAIRGNASEIMALAGVANGGRGVDTT 147

Query: 183 NSAV-SFPPSSMLYQENDVV*ALIGDVDVVQLYYRI 79
           ++A  + P +  L +E   +  + G+VD V   +RI
Sbjct: 148 DAAANAIPAAQTLARETGAIVVVTGEVDYVTDGHRI 183

>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 RSMHH*AKEKPMAKRKAALVGKEWVGHRNLASAPLVESSIE 669
           RS+H   +EK M K   ALV  +W  H     APL+++ ++
Sbjct: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQ 201

>RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 RSMHH*AKEKPMAKRKAALVGKEWVGHRNLASAPLVESSIE 669
           RS+H   +EK M K   ALV  +W  H     APL+++ ++
Sbjct: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQ 201

>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 RSMHH*AKEKPMAKRKAALVGKEWVGHRNLASAPLVESSIE 669
           RS+H   +EK M K   ALV  +W  H     APL+++ ++
Sbjct: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQ 201

>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 RSMHH*AKEKPMAKRKAALVGKEWVGHRNLASAPLVESSIE 669
           RS+H   +EK M K   ALV  +W  H     APL+++ ++
Sbjct: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQ 201

>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 RSMHH*AKEKPMAKRKAALVGKEWVGHRNLASAPLVESSIE 669
           RS+H   +EK M K   ALV  +W  H     APL+++ ++
Sbjct: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQ 201

>RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 326

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 547 RSMHH*AKEKPMAKRKAALVGKEWVGHRNLASAPLVESSI 666
           RS+H   +EK + K   ALV  +W  H  +  APL+++ +
Sbjct: 167 RSLHEQLREKTVQKDYLALVRGQWQSHCKVVKAPLLKNEL 206

>NIKE_PSEPK (Q88HL0) Nickel import ATP-binding protein nikE (EC 3.6.3.24)|
          Length = 273

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = -2

Query: 439 DPQGGEKAEKSL-W-IPKTLR-IDDPDEAAKSSIWTTLGIEPGERGMF--RPFQQKSGGR 275
           D  G    ++S+ W I + LR + D DEAA+ +    L  E G R     R  QQ SGG+
Sbjct: 97  DAPGAFNPQRSIGWSIAEPLRHLTDMDEAARQARTLALLEEMGLRAEHAQRLPQQLSGGQ 156

Query: 274 EQMSNAARVMQANP 233
            Q +N AR + A+P
Sbjct: 157 LQRANIARALAASP 170

>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing|
            protein 2) (Retinoblastoma protein-interacting
            zinc-finger protein) (Zinc finger protein RIZ)
            (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein
            G3B)
          Length = 1718

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 34   CYKLYKDITGKEKHRYPIVQLHNIYIADQCSDNIVFL 144
            C +L+KD T   +HR+ +  + NI++   C     FL
Sbjct: 1167 CVQLFKDKTDLSEHRFLLHGVGNIFVCSVCKKEFAFL 1203

>MUTL_XYLFT (Q87AC9) DNA mismatch repair protein mutL|
          Length = 619

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 79  YPIVQLHNIYIADQCSDNIVFLI*HA 156
           Y I QLH IYI  +C+D ++ +  HA
Sbjct: 431 YAIAQLHGIYILAECADGLIVVDMHA 456

>MUTL_XYLFA (Q9PFB8) DNA mismatch repair protein mutL|
          Length = 619

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 79  YPIVQLHNIYIADQCSDNIVFLI*HA 156
           Y I QLH IYI  +C+D ++ +  HA
Sbjct: 431 YAIAQLHGIYILAECADGLIVVDMHA 456

>POLS2_HUMAN (Q5K4E3) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2) (Protease serine 36)
          Length = 855

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 642 RCQVSVAHPFLSH*CRLPFGHWFLLGLMVHGAR 544
           RC+++ A P L   C++  G W L+G+ V G+R
Sbjct: 761 RCEMTSAPPLL---CQMTEGSWILVGMAVQGSR 790

>GREA_CHLMU (Q9PLU1) Transcription elongation factor greA (Transcript cleavage|
           factor greA)
          Length = 714

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -2

Query: 424 EKAEKSLWIPKTLRIDDPDEAAKSSIWTTLGIEPGERGMFRPFQQKSGGREQMSNAARVM 245
           +KA +S+    +  I+ P    +  +W  L +  GE G+F    +K  GR+ +++A   M
Sbjct: 423 KKARESILEKVSAMIEQPLLYPELFVWLFLRVVSGEDGLFSESDRKEIGRQMLASALEFM 482

>NRX1A_CHICK (Q9DDD0) Neurexin-1-alpha (Neurexin I-alpha) (Fragment)|
          Length = 1363

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 656  STNGADARFLWPTHSFPTNAAFRLAIGFS 570
            S  G    + WP +  P+  A RLAIGFS
Sbjct: 985  SKGGGQITYTWPPNDRPSTRADRLAIGFS 1013

>LEU3_AQUAE (O66607) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 364

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 28  VECYKLYKDITGKEKHRYPIVQLHNIYIADQCSDNIV 138
           +E   L++ I  +EK  YP V+L ++YI D C+  +V
Sbjct: 196 LEVSALWRQIVEEEKENYPDVELEHLYI-DNCAMQLV 231

>HXA2_CHICK (Q08727) Homeobox protein Hox-A2|
          Length = 375

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -3

Query: 411 NPCGFPRHSGLMTPTKLQRVRSGPP 337
           NP G PRHSG   P    R RSG P
Sbjct: 60  NPGGHPRHSGGGRPKASPRARSGSP 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,881,179
Number of Sequences: 219361
Number of extensions: 2562882
Number of successful extensions: 6755
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6752
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)