ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdf22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 2e-74
2dbj|AK104706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 2e-74
3dbj|AK070213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
4gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 135 2e-28
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
7gb|AY111308.1| Zea mays CL5730_1 mRNA sequence 76 2e-10
8gb|AY596614.1| Saccharum officinarum clone SCCCRZ2001B03, comple... 62 2e-06
9gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.14
10gb|AF542002.1| Griffithsia japonica signal recognition particle ... 44 0.55
11gb|AE010357.1| Methanopyrus kandleri AV19 section 56 of 157 of t... 42 2.2
12gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 42 2.2
13gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 2.2
14emb|Z95400.2|HS393P23 Human DNA sequence from clone RP3-393P23 o... 42 2.2
15dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 42 2.2
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
18ref|NM_104975.2| Arabidopsis thaliana heat shock protein binding... 40 8.5
19ref|NM_001030941.1| Gallus gallus staufen, RNA binding protein, ... 40 8.5
20ref|XM_469675.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.5
21gb|AC138005.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
22gb|AC138002.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
23gb|M75136.1|IH1CG Ictalurid herpesvirus 1 strain Auburn 1, compl... 40 8.5
24gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic ... 40 8.5
25ref|XM_849910.1| PREDICTED: Canis familiaris hypothetical protei... 40 8.5
26ref|XM_750441.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.5
27gb|AC131653.4| Mus musculus BAC clone RP23-220N8 from chromosome... 40 8.5
28ref|XM_738823.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 8.5
29gb|AC161223.4| Mus musculus chromosome 3, clone RP24-173A7, comp... 40 8.5
30gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence 40 8.5
31gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 8.5
32emb|AJ719886.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.5
33emb|BX323033.6| Zebrafish DNA sequence from clone DKEYP-63D11, c... 40 8.5
34gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, comp... 40 8.5
35gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 8.5
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
37gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 8.5
38gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis tha... 40 8.5
39dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 8.5
40dbj|AK110867.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
41dbj|AK100126.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
42dbj|AK069552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
43emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.5
44gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
45emb|AL772404.5| Mouse DNA sequence from clone RP23-374O4 on chro... 40 8.5
46dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 8.5
47emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chr... 40 8.5
48dbj|AP005432.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.5 
>dbj|AK104570.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G06, full
           insert sequence
          Length = 1096

 Score =  287 bits (145), Expect = 2e-74
 Identities = 352/421 (83%)
 Strand = Plus / Minus

                                                                       
Query: 203 agttgctggtagcaggagatgagggaggtgacgaatccgaaggccccggtgacccttggg 262
           |||||||| |||||||| ||||| |||||||||||||| || ||||| || |||||||| 
Sbjct: 811 agttgctgatagcaggaaatgagtgaggtgacgaatccaaatgcccctgttacccttgga 752

                                                                       
Query: 263 gtgaccttcttgggcgccagctgcagcagccccacggccaccaccacgtccatgcccgcc 322
           |||| ||||||||| | |||||| || ||||| ||||||||||| || |||||| |||||
Sbjct: 751 gtgatcttcttgggtgacagctgaagaagccctacggccaccacaacatccatggccgcc 692

                                                                       
Query: 323 ttcaccagcgccagcagccggtcgtccgactgcttcatcttccccaggtactgctcgtcc 382
           |||||||| || |||||||| || |||||||| |||||||| | |  |||||| || | |
Sbjct: 691 ttcaccagtgctagcagccgttcatccgactgtttcatcttgctcttgtactggtcattc 632

                                                                       
Query: 383 tcgtatttgtcggcgcccctgagctccttggcgcgcttcctcatcgccttggatagcctc 442
           || |||||||| |   |||| |||||  | ||  |||||||||| |  || |||||||||
Sbjct: 631 tcatatttgtcagtatccctcagctctctcgccagcttcctcattgattttgatagcctc 572

                                                                       
Query: 443 ttgagctcaccaagctcaactaggcttgcacagacggaggaggccatccagcagtagagg 502
           || ||||| |||||||||||||| | ||||||||| || |||||||||||||||||||||
Sbjct: 571 ttaagctctccaagctcaactagccctgcacagactgaagaggccatccagcagtagagg 512

                                                                       
Query: 503 gatatcctggcgatgcggtccgtgcgctccttgttctggtaaatccccgatctccctagc 562
           ||||||||  | || ||||| |||||||||||||||| ||| ||||| | ||| || | |
Sbjct: 511 gatatccttacaatccggtctgtgcgctccttgttcttgtatatccctgttcttcccaac 452

                                                                       
Query: 563 cacacgaactggtccaggaacaagaaggtcgacagcagagcattcttggacttcccaagc 622
           || || || ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 451 catacaaattggtccaggaacaagaaagtcgagagcagcgcatttttggacttcccaagc 392

            
Query: 623 a 623
           |
Sbjct: 391 a 391
to top
>dbj|AK104706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-D09, full
           insert sequence
          Length = 1003

 Score =  287 bits (145), Expect = 2e-74
 Identities = 352/421 (83%)
 Strand = Plus / Minus

                                                                       
Query: 203 agttgctggtagcaggagatgagggaggtgacgaatccgaaggccccggtgacccttggg 262
           |||||||| |||||||| ||||| |||||||||||||| || ||||| || |||||||| 
Sbjct: 714 agttgctgatagcaggaaatgagtgaggtgacgaatccaaatgcccctgttacccttgga 655

                                                                       
Query: 263 gtgaccttcttgggcgccagctgcagcagccccacggccaccaccacgtccatgcccgcc 322
           |||| ||||||||| | |||||| || ||||| ||||||||||| || |||||| |||||
Sbjct: 654 gtgatcttcttgggtgacagctgaagaagccctacggccaccacaacatccatggccgcc 595

                                                                       
Query: 323 ttcaccagcgccagcagccggtcgtccgactgcttcatcttccccaggtactgctcgtcc 382
           |||||||| || |||||||| || |||||||| |||||||| | |  |||||| || | |
Sbjct: 594 ttcaccagtgctagcagccgttcatccgactgtttcatcttgctcttgtactggtcattc 535

                                                                       
Query: 383 tcgtatttgtcggcgcccctgagctccttggcgcgcttcctcatcgccttggatagcctc 442
           || |||||||| |   |||| |||||  | ||  |||||||||| |  || |||||||||
Sbjct: 534 tcatatttgtcagtatccctcagctctctcgccagcttcctcattgattttgatagcctc 475

                                                                       
Query: 443 ttgagctcaccaagctcaactaggcttgcacagacggaggaggccatccagcagtagagg 502
           || ||||| |||||||||||||| | ||||||||| || |||||||||||||||||||||
Sbjct: 474 ttaagctctccaagctcaactagccctgcacagactgaagaggccatccagcagtagagg 415

                                                                       
Query: 503 gatatcctggcgatgcggtccgtgcgctccttgttctggtaaatccccgatctccctagc 562
           ||||||||  | || ||||| |||||||||||||||| ||| ||||| | ||| || | |
Sbjct: 414 gatatccttacaatccggtctgtgcgctccttgttcttgtatatccctgttcttcccaac 355

                                                                       
Query: 563 cacacgaactggtccaggaacaagaaggtcgacagcagagcattcttggacttcccaagc 622
           || || || ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 354 catacaaattggtccaggaacaagaaagtcgagagcagcgcatttttggacttcccaagc 295

            
Query: 623 a 623
           |
Sbjct: 294 a 294
to top
>dbj|AK070213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I05, full
           insert sequence
          Length = 1188

 Score =  280 bits (141), Expect = 5e-72
 Identities = 351/421 (83%)
 Strand = Plus / Minus

                                                                       
Query: 203 agttgctggtagcaggagatgagggaggtgacgaatccgaaggccccggtgacccttggg 262
           |||||||| |||||||| ||||| |||||||||||||| || ||||| || |||||||| 
Sbjct: 806 agttgctgatagcaggaaatgagtgaggtgacgaatccaaatgcccctgttacccttgga 747

                                                                       
Query: 263 gtgaccttcttgggcgccagctgcagcagccccacggccaccaccacgtccatgcccgcc 322
           |||| ||||||||| | |||||| || ||||| ||||||||||| || |||||| |||||
Sbjct: 746 gtgatcttcttgggtgacagctgaagaagccctacggccaccacaacatccatggccgcc 687

                                                                       
Query: 323 ttcaccagcgccagcagccggtcgtccgactgcttcatcttccccaggtactgctcgtcc 382
           |||||||| || |||||||| || |||||||| |||||||| | |  |||||| || | |
Sbjct: 686 ttcaccagtgctagcagccgttcatccgactgtttcatcttgctcttgtactggtcattc 627

                                                                       
Query: 383 tcgtatttgtcggcgcccctgagctccttggcgcgcttcctcatcgccttggatagcctc 442
           || |||||||| |   |||| |||||  | ||  |||||||||| |  || |||||||||
Sbjct: 626 tcatatttgtcagtatccctcagctctctcgccagcttcctcattgattttgatagcctc 567

                                                                       
Query: 443 ttgagctcaccaagctcaactaggcttgcacagacggaggaggccatccagcagtagagg 502
           || ||||| |||||||||||||| | ||||||||| || |||||||||||||||||||||
Sbjct: 566 ttaagctctccaagctcaactagccctgcacagactgaagaggccatccagcagtagagg 507

                                                                       
Query: 503 gatatcctggcgatgcggtccgtgcgctccttgttctggtaaatccccgatctccctagc 562
           ||||||||  | || ||||| |||||||||||||||| ||| ||||| | ||| || | |
Sbjct: 506 gatatccttacaatccggtctgtgcgctccttgttcttgtatatccctgttcttcccaac 447

                                                                       
Query: 563 cacacgaactggtccaggaacaagaaggtcgacagcagagcattcttggacttcccaagc 622
           || || || ||||||||||||||||| ||||| ||||| ||||| ||||||||| |||||
Sbjct: 446 catacaaattggtccaggaacaagaaagtcgagagcagcgcatttttggacttctcaagc 387

            
Query: 623 a 623
           |
Sbjct: 386 a 386
to top
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0056G13, complete sequence
          Length = 148011

 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                         
Query: 212   tagcaggagatgagggaggtgacgaatccgaaggccccggtgacccttggggtgaccttc 271
             |||||||| ||||| |||||||||||||| || ||||| || |||||||| |||| ||||
Sbjct: 93407 tagcaggaaatgagtgaggtgacgaatccaaatgcccctgttacccttggagtgatcttc 93466

                                                                         
Query: 272   ttgggcgccagctgcagcagccccacggccaccaccacgtccatgcccgccttcaccagc 331
             ||||| | |||||| || ||||| ||||||||||| || |||||| ||||||||||||| 
Sbjct: 93467 ttgggtgacagctgaagaagccctacggccaccacaacatccatggccgccttcaccagt 93526

                                             
Query: 332   gccagcagccggtcgtccgactgcttcatctt 363
             || |||||||| || |||||||| ||||||||
Sbjct: 93527 gctagcagccgttcatccgactgtttcatctt 93558



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                         
Query: 457   ctcaactaggcttgcacagacggaggaggccatccagcagtagagggatatcctggcgat 516
             ||||||||| | ||||||||| || |||||||||||||||||||||||||||||  | ||
Sbjct: 93856 ctcaactagccctgcacagactgaagaggccatccagcagtagagggatatccttacaat 93915

                                    
Query: 517   gcggtccgtgcgctccttgttct 539
              ||||| ||||||||||||||||
Sbjct: 93916 ccggtctgtgcgctccttgttct 93938



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 572   tggtccaggaacaagaaggtcgacagcagagcattcttggact 614
             ||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 94105 tggtccaggaacaagaaagtcgagagcagcgcatttttggact 94147
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                          
Query: 212    tagcaggagatgagggaggtgacgaatccgaaggccccggtgacccttggggtgaccttc 271
              |||||||| ||||| |||||||||||||| || ||||| || |||||||| |||| ||||
Sbjct: 938210 tagcaggaaatgagtgaggtgacgaatccaaatgcccctgttacccttggagtgatcttc 938269

                                                                          
Query: 272    ttgggcgccagctgcagcagccccacggccaccaccacgtccatgcccgccttcaccagc 331
              ||||| | |||||| || ||||| ||||||||||| || |||||| ||||||||||||| 
Sbjct: 938270 ttgggtgacagctgaagaagccctacggccaccacaacatccatggccgccttcaccagt 938329

                                              
Query: 332    gccagcagccggtcgtccgactgcttcatctt 363
              || |||||||| || |||||||| ||||||||
Sbjct: 938330 gctagcagccgttcatccgactgtttcatctt 938361



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                          
Query: 457    ctcaactaggcttgcacagacggaggaggccatccagcagtagagggatatcctggcgat 516
              ||||||||| | ||||||||| || |||||||||||||||||||||||||||||  | ||
Sbjct: 938659 ctcaactagccctgcacagactgaagaggccatccagcagtagagggatatccttacaat 938718

                                     
Query: 517    gcggtccgtgcgctccttgttct 539
               ||||| ||||||||||||||||
Sbjct: 938719 ccggtctgtgcgctccttgttct 938741



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 572    tggtccaggaacaagaaggtcgacagcagagcattcttggact 614
              ||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 938908 tggtccaggaacaagaaagtcgagagcagcgcatttttggact 938950



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 277      cgccagctgcagcagccccacggc 300
                |||||||||||||||| |||||||
Sbjct: 30138474 cgccagctgcagcagcgccacggc 30138451
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                          
Query: 212    tagcaggagatgagggaggtgacgaatccgaaggccccggtgacccttggggtgaccttc 271
              |||||||| ||||| |||||||||||||| || ||||| || |||||||| |||| ||||
Sbjct: 938208 tagcaggaaatgagtgaggtgacgaatccaaatgcccctgttacccttggagtgatcttc 938267

                                                                          
Query: 272    ttgggcgccagctgcagcagccccacggccaccaccacgtccatgcccgccttcaccagc 331
              ||||| | |||||| || ||||| ||||||||||| || |||||| ||||||||||||| 
Sbjct: 938268 ttgggtgacagctgaagaagccctacggccaccacaacatccatggccgccttcaccagt 938327

                                              
Query: 332    gccagcagccggtcgtccgactgcttcatctt 363
              || |||||||| || |||||||| ||||||||
Sbjct: 938328 gctagcagccgttcatccgactgtttcatctt 938359



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                          
Query: 457    ctcaactaggcttgcacagacggaggaggccatccagcagtagagggatatcctggcgat 516
              ||||||||| | ||||||||| || |||||||||||||||||||||||||||||  | ||
Sbjct: 938657 ctcaactagccctgcacagactgaagaggccatccagcagtagagggatatccttacaat 938716

                                     
Query: 517    gcggtccgtgcgctccttgttct 539
               ||||| ||||||||||||||||
Sbjct: 938717 ccggtctgtgcgctccttgttct 938739



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 572    tggtccaggaacaagaaggtcgacagcagagcattcttggact 614
              ||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 938906 tggtccaggaacaagaaagtcgagagcagcgcatttttggact 938948



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 277      cgccagctgcagcagccccacggc 300
                |||||||||||||||| |||||||
Sbjct: 30229896 cgccagctgcagcagcgccacggc 30229873
to top
>gb|AY111308.1| Zea mays CL5730_1 mRNA sequence
          Length = 1158

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 266 accttcttgggcgccagctgcagcagccccacggccaccaccacgtccatgcccgccttc 325
           |||||||| || ||||||||||| ||||||||||||||||| | ||||| || || ||| 
Sbjct: 737 accttcttcggggccagctgcaggagccccacggccaccacgatgtccaggctcgacttg 678

                                 
Query: 326 accagcgccagcagccggtcgt 347
           || |||||||||||||| ||||
Sbjct: 677 acgagcgccagcagccgctcgt 656



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 562 ccacacgaactggtccaggaacaagaaggtcgacagcagagcattcttggacttccc 618
           |||||||| |||||||||||| | ||| ||||||||||  || ||||||||||||||
Sbjct: 441 ccacacgatctggtccaggaagaggaaagtcgacagcatcgcgttcttggacttccc 385
to top
>gb|AY596614.1| Saccharum officinarum clone SCCCRZ2001B03, complete sequence
          Length = 1223

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 260 ggggtgaccttcttgggcgccagctgcagcagccccacggccaccac 306
           ||||| ||||||||||| |||||||||||||||||||| || |||||
Sbjct: 451 ggggtcaccttcttgggggccagctgcagcagccccacagcgaccac 497
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 300     ccaccaccacgtccatgcccgcc 322
               |||||||||||||||||||||||
Sbjct: 1700438 ccaccaccacgtccatgcccgcc 1700460
to top
>gb|AF542002.1| Griffithsia japonica signal recognition particle receptor-like
           protein L36 mRNA, partial cds
          Length = 595

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 325 caccagcgccagcagccggtcg 346
           ||||||||||||||||||||||
Sbjct: 290 caccagcgccagcagccggtcg 269
to top
>gb|AE010357.1| Methanopyrus kandleri AV19 section 56 of 157 of the complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 304  caccacgtccatgcccgccttcaccagcg 332
            |||| ||||| ||||||||||||||||||
Sbjct: 6821 caccgcgtccgtgcccgccttcaccagcg 6793
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 294     ccacggccaccaccacgtcca 314
               |||||||||||||||||||||
Sbjct: 1611802 ccacggccaccaccacgtcca 1611822
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 318     ccgccttcaccagcgccagcagccggtcgtccg 350
               |||||||||||| |||||||| ||| |||||||
Sbjct: 3675013 ccgccttcaccatcgccagcacccgctcgtccg 3674981
to top
>emb|Z95400.2|HS393P23 Human DNA sequence from clone RP3-393P23 on chromosome Xq21.1-21.33
             Contains the 5' end of the KLHL4 gene for kelch-like 4
             (Drosophila), complete sequence
          Length = 133120

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    cgtgtacatatatgtataaaa 46
             |||||||||||||||||||||
Sbjct: 56328 cgtgtacatatatgtataaaa 56308
to top
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 351    actgcttcatcttccccaggt 371
              |||||||||||||||||||||
Sbjct: 111716 actgcttcatcttccccaggt 111696
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 281      agctgcagcagccccacggccacca 305
                ||||||||| |||||||||||||||
Sbjct: 12678719 agctgcagccgccccacggccacca 12678743
to top
>dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0039F24
          Length = 132107

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 281   agctgcagcagccccacggccacca 305
             ||||||||| |||||||||||||||
Sbjct: 32240 agctgcagccgccccacggccacca 32264
to top
>ref|NM_104975.2| Arabidopsis thaliana heat shock protein binding / unfolded protein
            binding AT1G62970 mRNA, complete cds
          Length = 2737

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   atactgctacgtgctttacg 102
            ||||||||||||||||||||
Sbjct: 1991 atactgctacgtgctttacg 2010
to top
>ref|NM_001030941.1| Gallus gallus staufen, RNA binding protein, homolog 2 (Drosophila)
           (STAU2), mRNA
          Length = 2379

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 278 gccagctgcagcagccccac 297
           ||||||||||||||||||||
Sbjct: 240 gccagctgcagcagccccac 259
to top
>ref|XM_469675.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1852

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 277 cgccagctgcagcagccccacggc 300
           |||||||||||||||| |||||||
Sbjct: 202 cgccagctgcagcagcgccacggc 179
to top
>gb|AC138005.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0038O16, complete sequence
          Length = 37350

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 393   cggcgcccctgagctccttggcgc 416
             |||||||||||||| |||||||||
Sbjct: 10386 cggcgcccctgagcaccttggcgc 10409
to top
>gb|AC138002.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0011I07
              map S10207, complete sequence
          Length = 123847

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 393    cggcgcccctgagctccttggcgc 416
              |||||||||||||| |||||||||
Sbjct: 107770 cggcgcccctgagcaccttggcgc 107793
to top
>gb|M75136.1|IH1CG Ictalurid herpesvirus 1 strain Auburn 1, complete genome
          Length = 134226

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   cagccccacggccaccacca 308
             ||||||||||||||||||||
Sbjct: 36674 cagccccacggccaccacca 36655
to top
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete
             sequence
          Length = 163972

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 277   cgccagctgcagcagccccacggc 300
             |||||||||||||||| |||||||
Sbjct: 85421 cgccagctgcagcagcgccacggc 85444
to top
>ref|XM_849910.1| PREDICTED: Canis familiaris hypothetical protein LOC612176
           (LOC612176), mRNA
          Length = 1359

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 280 cagctgcagcagccccacggccaccacc 307
           |||||||||||||  |||||||||||||
Sbjct: 882 cagctgcagcagcagcacggccaccacc 855
to top
>ref|XM_750441.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g12020)
           partial mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 ccacggccaccaccacgtcc 313
           ||||||||||||||||||||
Sbjct: 509 ccacggccaccaccacgtcc 490
to top
>gb|AC131653.4| Mus musculus BAC clone RP23-220N8 from chromosome 19, complete sequence
          Length = 168365

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gtgtacatatatgtataaaa 46
             ||||||||||||||||||||
Sbjct: 45202 gtgtacatatatgtataaaa 45183
to top
>ref|XM_738823.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000381.02.0)
            partial mRNA
          Length = 1359

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 68   catcatcatcattctatact 87
            ||||||||||||||||||||
Sbjct: 994  catcatcatcattctatact 1013
to top
>gb|AC161223.4| Mus musculus chromosome 3, clone RP24-173A7, complete sequence
          Length = 156824

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   ccttgactttggccaaaggg 190
             ||||||||||||||||||||
Sbjct: 72528 ccttgactttggccaaaggg 72509
to top
>gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence
          Length = 251756

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gtgtacatatatgtataaaa 46
              ||||||||||||||||||||
Sbjct: 174243 gtgtacatatatgtataaaa 174224
to top
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   tggcgcgcttcctcatcgcc 430
             ||||||||||||||||||||
Sbjct: 55318 tggcgcgcttcctcatcgcc 55337
to top
>emb|AJ719886.1| Gallus gallus mRNA for hypothetical protein, clone 7n10
          Length = 2379

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 278 gccagctgcagcagccccac 297
           ||||||||||||||||||||
Sbjct: 240 gccagctgcagcagccccac 259
to top
>emb|BX323033.6| Zebrafish DNA sequence from clone DKEYP-63D11, complete sequence
          Length = 171058

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tgtacatatatgtataaaaa 47
             ||||||||||||||||||||
Sbjct: 12333 tgtacatatatgtataaaaa 12352
to top
>gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, complete sequence
          Length = 149207

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tacatatatgtataaaaacc 49
             ||||||||||||||||||||
Sbjct: 66822 tacatatatgtataaaaacc 66841
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 319    cgccttcaccagcgccagcagccggtcg 346
              |||||| ||||||| |||||||||||||
Sbjct: 378978 cgccttgaccagcgtcagcagccggtcg 378951
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 393     cggcgcccctgagctccttggcgc 416
               |||||||||||||| |||||||||
Sbjct: 9099196 cggcgcccctgagcaccttggcgc 9099219
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    ccagcgccagcagccggtcg 346
              ||||||||||||||||||||
Sbjct: 979878 ccagcgccagcagccggtcg 979859
to top
>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 98412

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    atactgctacgtgctttacg 102
             ||||||||||||||||||||
Sbjct: 51674 atactgctacgtgctttacg 51693
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 327     ccagcgccagcagccggtcg 346
               ||||||||||||||||||||
Sbjct: 1387697 ccagcgccagcagccggtcg 1387716
to top
>dbj|AK110867.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E02, full
           insert sequence
          Length = 1852

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 277 cgccagctgcagcagccccacggc 300
           |||||||||||||||| |||||||
Sbjct: 202 cgccagctgcagcagcgccacggc 179
to top
>dbj|AK100126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008I20, full
           insert sequence
          Length = 3229

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 393 cggcgcccctgagctccttggcgc 416
           |||||||||||||| |||||||||
Sbjct: 612 cggcgcccctgagcaccttggcgc 589
to top
>dbj|AK069552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023N03, full
           insert sequence
          Length = 3226

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 393 cggcgcccctgagctccttggcgc 416
           |||||||||||||| |||||||||
Sbjct: 604 cggcgcccctgagcaccttggcgc 581
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 294     ccacggccaccaccacgtcc 313
               ||||||||||||||||||||
Sbjct: 4629318 ccacggccaccaccacgtcc 4629299
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 393     cggcgcccctgagctccttggcgc 416
               |||||||||||||| |||||||||
Sbjct: 9170893 cggcgcccctgagcaccttggcgc 9170916
to top
>emb|AL772404.5| Mouse DNA sequence from clone RP23-374O4 on chromosome 2, complete
             sequence
          Length = 157345

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    cgtgtacatatatgtataaa 45
             ||||||||||||||||||||
Sbjct: 76138 cgtgtacatatatgtataaa 76157
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 327     ccagcgccagcagccggtcg 346
               ||||||||||||||||||||
Sbjct: 2169741 ccagcgccagcagccggtcg 2169722
to top
>emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chromosome X, complete
             sequence
          Length = 179420

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tacatatatgtataaaaacc 49
             ||||||||||||||||||||
Sbjct: 65878 tacatatatgtataaaaacc 65859
to top
>dbj|AP005432.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-61L19, complete
            sequence
          Length = 140739

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  gcgtccgttcctcacgcctt 174
            ||||||||||||||||||||
Sbjct: 4553 gcgtccgttcctcacgcctt 4572


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,524,058
Number of Sequences: 3902068
Number of extensions: 5524058
Number of successful extensions: 138548
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137634
Number of HSP's gapped (non-prelim): 914
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top