>ADO3_ARATH (Q9C9W9) Adagio protein 3 (Flavin-binding kelch repeat F-box|
protein 1) (F-box only protein 2a) (FBX2a)
Length = 619
Score = 200 bits (508), Expect = 2e-51
Identities = 92/135 (68%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Frame = -2
Query: 481 SGSLRLRSSDAYIMDVGEENPQWRQLATTVFPSGC-PPPRLDHVTVSLPCGRIIIFGGSI 305
SG L+LRS +AY +D+ +E P+WR+L + FP PPPRLDHV VS+PCGR+IIFGGSI
Sbjct: 484 SGHLKLRSGEAYTIDLEDEEPRWRELECSAFPGVVVPPPRLDHVAVSMPCGRVIIFGGSI 543
Query: 304 AGLHSPXELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCXXXXXXXXXXXGHSGEEWIL 125
AGLHSP +LFL+DPAEEKP+WRILNVPG+PPK AWGHSTC GH+GEEWIL
Sbjct: 544 AGLHSPSQLFLIDPAEEKPSWRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWIL 603
Query: 124 NELHELCLASRPDED 80
NELHELCLASR D D
Sbjct: 604 NELHELCLASRQDSD 618
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = -2
Query: 457 SDAYIMDVGEENPQWRQLATTVFPSGCPP-PRLDHVTVSLPCGRIIIFGGSIAGLHSPXE 281
+D +++D+ ++P W+++A G PP PR H + ++ ++++ GG +
Sbjct: 383 NDVFVLDLDAKHPTWKEVA-----GGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSD 437
Query: 280 LFLLDPAEEKPTWRILNVPGQPPKFAWGHS 191
FLLD +KPTW+ + PP GHS
Sbjct: 438 TFLLDLTTDKPTWKEIPTSWAPPS-RLGHS 466
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -2
Query: 457 SDAYIMDVGEENPQWRQLATTVFPSGCPPPRLDHVTVSLPCGRIIIFGGSIAGLH---SP 287
SD +++D+ + P W+++ T S PP RL H +I++FGG H
Sbjct: 436 SDTFLLDLTTDKPTWKEIPT----SWAPPSRLGHSLSVFGRTKILMFGGLANSGHLKLRS 491
Query: 286 XELFLLDPAEEKPTWRILNVPGQP 215
E + +D +E+P WR L P
Sbjct: 492 GEAYTIDLEDEEPRWRELECSAFP 515
Score = 42.4 bits (98), Expect = 7e-04
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = -2
Query: 454 DAYIMDVGEENPQWRQLATTVFPSGCPPPRLDHVTVSLPCGRIIIFGG-SIAGLHSPXEL 278
D +++++ E P+W+++ T PP R H L +++FGG GL + ++
Sbjct: 332 DTFVLNLDAECPEWQRVRVT----SSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLN--DV 385
Query: 277 FLLDPAEEKPTWRILNVPGQPPKFAWGHSTC 185
F+LD + PTW+ + G PP HS+C
Sbjct: 386 FVLDLDAKHPTWKEV-AGGTPPLPRSWHSSC 415
Score = 33.9 bits (76), Expect = 0.23
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 331 RIIIFGGSIAGLHSPXELFLLDPAEEKPTWRILNVPGQPPKFAWGHS 191
R+++FGG + + F+L+ E P W+ + V PP WGH+
Sbjct: 316 RLVLFGGEGVNMQPLDDTFVLNLDAECPEWQRVRVTSSPPG-RWGHT 361
>ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kelch protein 1)|
(Flavin-binding kelch repeat F-box protein 1-like
protein 2) (FKF1-like protein 2) (F-box only protein 2b)
(FBX2b) (Clock-associated PAS protein ZTL)
Length = 609
Score = 166 bits (421), Expect = 2e-41
Identities = 78/135 (57%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
Frame = -2
Query: 481 SGSLRLRSSDAYIMDVGEENPQWRQLATTVFPSG------CPPPRLDHVTVSLPCGRIII 320
SG L+ RSSD + MD+ EE P WR + + P PPPRLDHV V+LP GRI+I
Sbjct: 472 SGPLKFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGVAPPPRLDHVAVNLPGGRILI 531
Query: 319 FGGSIAGLHSPXELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCXXXXXXXXXXXGHSG 140
FGGS+AGLHS +L+LLDP E+KPTWRILN+PG+PP+FAWGH TC G +G
Sbjct: 532 FGGSVAGLHSASQLYLLDPTEDKPTWRILNIPGRPPRFAWGHGTCVVGGTRAIVLGGQTG 591
Query: 139 EEWILNELHELCLAS 95
EEW+L+ELHEL LAS
Sbjct: 592 EEWMLSELHELSLAS 606
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = -2
Query: 457 SDAYIMDVGEENPQWRQLATTVFPSGCPPPRLDHVTVSLPCGRIIIFGGSIAG----LHS 290
SD +++D+ E P WR++ + PP RL H T+S+ GR I+ G +A
Sbjct: 424 SDTFLLDLSIEKPVWREIPA----AWTPPSRLGH-TLSVYGGRKILMFGGLAKSGPLKFR 478
Query: 289 PXELFLLDPAEEKPTWRILNVPGQP 215
++F +D +EE+P WR + G P
Sbjct: 479 SSDVFTMDLSEEEPCWRCVTGSGMP 503
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -2
Query: 457 SDAYIMDVGEENPQWRQLATTVFPSGCPPPRLDHVTVSLPCGRIIIFGG-SIAGLHSPXE 281
+D +++D+ + P+W+ + S PP R H + +++FGG GL + +
Sbjct: 319 NDTFVLDLNSDYPEWQHVKV----SSPPPGRWGHTLTCVNGSNLVVFGGCGQQGLLN--D 372
Query: 280 LFLLDPAEEKPTWRILNVPGQPPKFAWGHSTC 185
+F+L+ + PTWR ++ P +W HS+C
Sbjct: 373 VFVLNLDAKPPTWREISGLAPPLPRSW-HSSC 403
Score = 42.7 bits (99), Expect = 5e-04
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = -2
Query: 427 ENPQWRQLAT--TVFPSGCPPPRLDHVTVSLPCGRIIIFGGSIAGLHSPXELFLLDPAEE 254
E WR+L+ +V PS C + + R+++FGG + + F+LD +
Sbjct: 276 EAAAWRKLSVGGSVEPSRC------NFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSD 329
Query: 253 KPTWRILNVPGQPPKFAWGHS-TCXXXXXXXXXXXGHSGEEWILNELHELCLASRP 89
P W+ + V PP WGH+ TC G++ +LN++ L L ++P
Sbjct: 330 YPEWQHVKV-SSPPPGRWGHTLTCVNGSNLVVFGG--CGQQGLLNDVFVLNLDAKP 382
Score = 42.0 bits (97), Expect = 9e-04
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -2
Query: 457 SDAYIMDVGEENPQWRQLATTVFPSGCPPP--RLDHVTVSLPCGRIIIFGGSIAGLHSPX 284
+D +++++ + P WR++ SG PP R H + +L ++I+ GG
Sbjct: 371 NDVFVLNLDAKPPTWREI------SGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLS 424
Query: 283 ELFLLDPAEEKPTWRILNVPGQPP 212
+ FLLD + EKP WR + PP
Sbjct: 425 DTFLLDLSIEKPVWREIPAAWTPP 448
>ADO2_ARATH (Q8W420) Adagio protein 2 (LOV kelch protein 2) (Flavin-binding|
kelch repeat F-box protein 1-like protein 1) (FKF1-like
protein 1) (F-box only protein 2c) (FBX2c)
Length = 611
Score = 158 bits (399), Expect = 8e-39
Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Frame = -2
Query: 481 SGSLRLRSSDAYIMDVGEENPQWRQLAT--TVFPSG--CPPPRLDHVTVSLPCGRIIIFG 314
+G+LR RS+D Y MD+ E+ P WR + + P G PPPRLDHV +SLP GRI+IFG
Sbjct: 473 NGTLRFRSNDVYTMDLSEDEPSWRPVIGYGSSLPGGMAAPPPRLDHVAISLPGGRILIFG 532
Query: 313 GSIAGLHSPXELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCXXXXXXXXXXXGHSGEE 134
GS+AGL S +L+LLDP EEKP WRILNV G PP+FAWGH+TC G +GEE
Sbjct: 533 GSVAGLDSASQLYLLDPNEEKPAWRILNVQGGPPRFAWGHTTCVVGGTRLVVLGGQTGEE 592
Query: 133 WILNELHELCLAS 95
W+LNE HEL LA+
Sbjct: 593 WMLNEAHELLLAT 605
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = -2
Query: 457 SDAYIMDVGEENPQWRQLATTVFPSGCPPPRLDHVTVSLPCGRIIIFGGSIAGLHS-PXE 281
+D +++D+G +P+W+ +V S PP R H + R+++FGG G H +
Sbjct: 320 NDTFVLDLGSSSPEWK----SVLVSSPPPGRWGHTLSCVNGSRLVVFGG--YGSHGLLND 373
Query: 280 LFLLDPAEEKPTWRILNVPGQPPKFAWGHSTC 185
+FLLD + P+WR ++ P +W HS+C
Sbjct: 374 VFLLDLDADPPSWREVSGLAPPIPRSW-HSSC 404
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = -2
Query: 457 SDAYIMDVGEENPQWRQLATTVFPSGCPPP--RLDHVTVSLPCGRIIIFGGSIAGLHSPX 284
+D +++D+ + P WR++ SG PP R H + +L ++I+ GG
Sbjct: 372 NDVFLLDLDADPPSWREV------SGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLS 425
Query: 283 ELFLLDPAEEKPTWRILNVPGQPP 212
+ FLLD + + P WR + VP PP
Sbjct: 426 DTFLLDLSMDIPAWREIPVPWTPP 449
Score = 40.0 bits (92), Expect = 0.003
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -2
Query: 427 ENPQWRQLAT--TVFPSGCPPPRLDHVTVSLPCGRIIIFGGSIAGLHSPXELFLLDPAEE 254
E WR+ + TV PS C + + RI+IFGG + + F+LD
Sbjct: 277 EATAWRKFSVGGTVEPSRC------NFSACAVGNRIVIFGGEGVNMQPMNDTFVLDLGSS 330
Query: 253 KPTWRILNVPGQPPKFAWGHS 191
P W+ + V PP WGH+
Sbjct: 331 SPEWKSVLV-SSPPPGRWGHT 350
>DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC alpha)|
Length = 4499
Score = 36.2 bits (82), Expect = 0.047
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = -2
Query: 457 SDAYIMDVGEENP-QWRQLATTVFPSGCPPPRLDHVTVSLPCGRIIIFGGSIAGL-HSPX 284
+D Y +D + + +W++L + PPPR H ++L R+++FGG + ++
Sbjct: 47 NDLYELDTSDPDEYKWKELVV----ANAPPPRARHAAIALDDKRLLVFGGLNKRIRYNDV 102
Query: 283 ELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCXXXXXXXXXXXGHSGEEWILNEL 116
LF D +W + V G P+ H T G+ G + NE+
Sbjct: 103 WLFNYD----DKSWTCMEVEGAAPE-PRAHFTATRFGSRVFIFGGYGGSGQVYNEM 153
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 427 ENPQWRQLATTVFPSGCPPPRLDHVTVSLPCGRIIIFGG-SIAGLHSPXELFLLDPAEEK 251
E +WR TV S PP R H TV L G +++FGG ++A + +++ L E
Sbjct: 579 EGAEWRWSPATVSGS-TPPDRTAHSTVVLSDGELVVFGGINLADQNDLNDIYYLRKQGEG 637
Query: 250 PTW 242
W
Sbjct: 638 WVW 640
>SYS_HAEDU (Q7VM65) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
(SerRS)
Length = 435
Score = 28.5 bits (62), Expect = 9.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Frame = -2
Query: 349 VSLPCGRIIIFGGSIAGLHSPXELFLLDPAEEKPTWRILNVP-----------GQPPKF 206
V L R ++ IA LH F+LD E+ + +NVP GQ PKF
Sbjct: 156 VKLTASRFVVMKDKIARLHRALAQFMLDLHSEQHGYMEVNVPLLVNHDTLYGTGQLPKF 214
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,348,772
Number of Sequences: 219361
Number of extensions: 1579271
Number of successful extensions: 4547
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4533
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)