ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdc14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2162_ARATH (O22224) Protein At2g41620 216 8e-56
2TLN1_CHICK (P54939) Talin-1 33 0.91
3HUTU_RALSO (Q8XW28) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 32 2.0
4LCMT2_CANGA (Q6FXA5) Leucine carboxyl methyltransferase 2 (EC 2.... 32 2.0
5CD014_MOUSE (Q9JJG9) Protein C4orf14 homolog 31 3.5
6KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-ass... 31 4.5
7CHS2_NEUCR (P30589) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP ... 31 4.5
8NIC96_YEAST (P34077) Nucleoporin NIC96 (Nuclear pore protein NIC... 31 4.5
9BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor 31 4.5
10KRA3A_SHEEP (P02443) Keratin, high-sulfur matrix protein, IIIA3A 30 5.9
11KRA3_CAPHI (P02442) Keratin, high-sulfur matrix protein, IIIA3 (... 30 5.9
12KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-ass... 30 7.7

>Y2162_ARATH (O22224) Protein At2g41620|
          Length = 861

 Score =  216 bits (549), Expect = 8e-56
 Identities = 100/165 (60%), Positives = 133/165 (80%)
 Frame = -3

Query: 732  TVNKCLSDAVCALAHNMLDGESRAVGLIQSGNEILETARYSSEASVQDKDLISEQQIVLR 553
            T+NKCLS+A+C+LA   LDGESR  GLI +GN+ILET +Y  E S+Q+++ + EQ+ +LR
Sbjct: 695  TINKCLSEAICSLARGRLDGESRTSGLILAGNDILETYKYYPEVSLQERERVMEQETILR 754

Query: 552  QLEAILHIYRLARAGQTVDALRETIKLPFLHLDPQSPNVSVDVFRNLSPHVQACVPDLLK 373
            +LEAIL I++L R G  +DALRE  KLPFLHLDP+ P+ + DVF++ SP+ Q CVPDLLK
Sbjct: 755  ELEAILSIHKLGRLGNHLDALREIAKLPFLHLDPRMPDATADVFQSASPYFQTCVPDLLK 814

Query: 372  VALNCMDNVRDTDGTLRAVKSKIANLVASNMSRNWPQDLYQKVAQ 238
            VAL C+DNV DTDG++RA++SKIA  +ASN  RNWP+DLY+KVA+
Sbjct: 815  VALTCLDNVPDTDGSIRAMRSKIAGFLASNTHRNWPRDLYEKVAR 859



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>TLN1_CHICK (P54939) Talin-1|
          Length = 2541

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 32/147 (21%), Positives = 58/147 (39%)
 Frame = -3

Query: 723  KCLSDAVCALAHNMLDGESRAVGLIQSGNEILETARYSSEASVQDKDLISEQQIVLRQLE 544
            K ++ A+  L   +  G     G+  +  E+ +  R  S+A+       S+ Q     LE
Sbjct: 1095 KAVTSAIAHLLGEVAQGNENYTGI--AAREVAQALRSLSQAARGVAANSSDPQAQNAMLE 1152

Query: 543  AILHIYRLARAGQTVDALRETIKLPFLHLDPQSPNVSVDVFRNLSPHVQACVPDLLKVAL 364
                +  + +A   ++  R+ +  P    DP S    V V + +S  +  CV        
Sbjct: 1153 CASDV--MDKANNLIEEARKAVAKPG---DPDSQQRLVQVAKAVSQALNRCV-------- 1199

Query: 363  NCMDNVRDTDGTLRAVKSKIANLVASN 283
            NC+   RD D  +R V      L++ +
Sbjct: 1200 NCLPGQRDVDAAIRMVGEASKRLLSDS 1226



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>HUTU_RALSO (Q8XW28) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 601

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 27/108 (25%), Positives = 49/108 (45%)
 Frame = -3

Query: 717 LSDAVCALAHNMLDGESRAVGLIQSGNEILETARYSSEASVQDKDLISEQQIVLRQLEAI 538
           + DA+  + H+   GE+ ++GL+ +  E+L      + A     DL+++Q      +   
Sbjct: 258 IDDALNLIRHHCERGEAVSIGLLGNAAELLPELVRRARAGGLKPDLVTDQTSAHDLVNGY 317

Query: 537 LHIYRLARAGQTVDALRETIKLPFLHLDPQSPNVSVDVFRNLSPHVQA 394
           L       AG TV+  R   + P  H      ++S +  R+ + HVQA
Sbjct: 318 L------PAGWTVEQWRAAQRDPAQH-----AHLSAEAARSCAVHVQA 354



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>LCMT2_CANGA (Q6FXA5) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)|
          Length = 674

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -3

Query: 474 LPFLHLDPQSPNVSVDVFRNLSPHVQACVPDLLKVALNCMDNVRDTDGTLRAVKSKIANL 295
           LPF  LDPQ+P  S   + N    +    PDLL +    +    +    +  +     N+
Sbjct: 115 LPFEMLDPQNPQYS--RYSNRLNFIDIDYPDLLNIKSGVIKETPELLSIIGGIDPTETNM 172

Query: 294 VASNMSRNWPQDLYQKVA 241
           + S   +  P DLY   A
Sbjct: 173 IISERYKTIPCDLYDMPA 190



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>CD014_MOUSE (Q9JJG9) Protein C4orf14 homolog|
          Length = 693

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 618 RYSSEASVQDKDLISEQQIVLRQLEAILHIYRLARAGQTVDALRETIKLPF 466
           R   +A+  ++DL  E+Q  L QL+   H Y + R G+T    RE  ++PF
Sbjct: 408 RLQEDATKAEEDLSEEEQSQLNQLKK--HGYIVGRVGRTFSYSREQDEVPF 456



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>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein|
           5.4) (Ultrahigh sulfur keratin-associated protein 5.4)
          Length = 288

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -2

Query: 445 SECISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 293
           S C S C Q   + C   C+ S  G S     C +    P CCQ   C+PC
Sbjct: 209 SGCGSSCCQS--SCCKPCCSSSGCGSSCCQSSCCK----PYCCQSSCCKPC 253



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>CHS2_NEUCR (P30589) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 2)
          Length = 944

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 330 TLRAVKSKIANLVASNMSRNWPQDLYQKVAQCI 232
           T+ AV   I++  + N SR W  D +QK+  C+
Sbjct: 256 TMHAVMKNISHFCSRNKSRTWGADGWQKIVVCV 288



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>NIC96_YEAST (P34077) Nucleoporin NIC96 (Nuclear pore protein NIC96) (96 kDa|
           nucleoporin-interacting component)
          Length = 839

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 22/94 (23%), Positives = 45/94 (47%)
 Frame = -3

Query: 627 ETARYSSEASVQDKDLISEQQIVLRQLEAILHIYRLARAGQTVDALRETIKLPFLHLDPQ 448
           + A  S +  V++K++     ++L  + +I  +Y   +  +T+  +     LPF   D  
Sbjct: 698 DNAGISRQIHVKNKEIC----MLLLNISSIRELYFNKQWQETLSQMELLDLLPFS--DEL 751

Query: 447 SPNVSVDVFRNLSPHVQACVPDLLKVALNCMDNV 346
           S       F NL  ++   +P+LL + L+C+ N+
Sbjct: 752 SARKKAQDFSNLDDNIVKNIPNLLIITLSCISNM 785



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>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
 Frame = -2

Query: 514  CWTNC*RSEGNHQTSISSFGSTVSECISRCIQEFITPCSSLCAR-----------SPEGC 368
            C   C +++    +  S F     +C     ++FI  C+    +            PEGC
Sbjct: 1569 CACQCLKTKVCTDSDFSFFSHDTCDCECSNAKDFILNCNQKLNKVSCQPQCIQRPPPEGC 1628

Query: 367  SKLHGQC*RYRWDPACCQVKDCE 299
            ++  G+   + WDP  C+ K  E
Sbjct: 1629 AEKFGEF--FSWDPKACECKCIE 1649



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>KRA3A_SHEEP (P02443) Keratin, high-sulfur matrix protein, IIIA3A|
          Length = 130

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = -2

Query: 436 ISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 293
           +SRC +    PC       P  CS   G C      P  CQ   C PC
Sbjct: 46  VSRCTRPICEPCRRPVCCDP--CSLQEGCCRPITCCPTSCQAVVCRPC 91



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>KRA3_CAPHI (P02442) Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)|
          Length = 132

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = -2

Query: 436 ISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 293
           +SRC +    PC       P  CS   G C      P  CQ   C PC
Sbjct: 46  VSRCTRPICEPCRRPVCCDP--CSLQEGCCRPITCCPTSCQAVVCRPC 91



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>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein|
           2.4) (High sulfur keratin-associated protein 2.4)
          Length = 128

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = -2

Query: 439 CISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 293
           C+ RC +    PC       P  CS   G C      P+ C    C PC
Sbjct: 46  CVPRCTRPICEPCRRPVCCDP--CSLQEGCCRPITCCPSSCTAVVCRPC 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,916,624
Number of Sequences: 219361
Number of extensions: 2597768
Number of successful extensions: 6787
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6757
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7649585595
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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