ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdc14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 515 e-143
2gb|AY108425.1| Zea mays PCO146490 mRNA sequence 490 e-135
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 323 5e-85
4gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 323 5e-85
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 323 5e-85
6gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 323 5e-85
7gb|AC148340.3| Medicago truncatula chromosome 2 BAC clone mth2-2... 50 0.010
8emb|Z95331.2|HS941F9 Human DNA sequence from clone CTA-941F9 on ... 44 0.64
9gb|AC015604.5|AC015604 Homo sapiens, clone RP11-45D18, complete ... 44 0.64
10dbj|AB051572.1| Aphis gossypii mRNA for GrpE, complete cds 44 0.64
11dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.64
12emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chro... 42 2.5
13emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chr... 42 2.5
14emb|AL356500.14| Human DNA sequence from clone RP11-307G7 on chr... 42 2.5
15gb|AC128692.11| Homo sapiens 3 BAC RP11-743G11 (Roswell Park Can... 42 2.5
16emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chr... 42 2.5
17emb|AL732401.6| Mouse DNA sequence from clone RP23-405K20 on chr... 42 2.5
18gb|AC106779.3| Homo sapiens chromosome 16 clone RP11-343H19, com... 42 2.5
19gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 42 2.5
20gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park C... 42 2.5
21gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 42 2.5
22gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswel... 42 2.5
23gb|AC003114.1|T12M4 Arabidopsis thaliana chromosome 1 BAC T12M4 ... 42 2.5

>dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K18, full
            insert sequence
          Length = 3073

 Score =  515 bits (260), Expect = e-143
 Identities = 430/486 (88%), Gaps = 3/486 (0%)
 Strand = Plus / Minus

                                                                        
Query: 229  tcatatgcactgagccaccttctggtacaaatcctgtggccaattcctgctcatgttgct 288
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 2691 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 2632

                                                                        
Query: 289  tgccacaaggttcgcaatctttgacttgacagcacgcagggtcccatcggtatctctaac 348
            |||||| ||||| || |||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 2631 tgccacgaggtttgcgatctttgacttgactgcacgcaaggtcccatcagtatctctaac 2572

                                                                        
Query: 349  attgtccatgcagtttagagcaaccttcaggagatctggcacacaagcttgaacatgggg 408
            ||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 2571 attgtccatacaatttagagcaaccttcaagagatctggcacacaagcttgaacatgcgg 2512

                                                                        
Query: 409  tgataaattcctgaatacatcgactgatacattcggagactgtggatccaaatgaagaaa 468
            ||| || || ||||| ||||| ||||  ||||| |||| ||| |||||||||||||||||
Sbjct: 2511 tgacaagtttctgaacacatcaactgtcacatttggagcctgaggatccaaatgaagaaa 2452

                                                                        
Query: 469  tggaagtttgatggtttccctcagagcgtcaacagtttgtccagcacgagctagcctata 528
            ||| ||||||||||||||||||| ||| || | ||| |||||||| ||||| ||||||||
Sbjct: 2451 tgggagtttgatggtttccctcaaagcatctaaagtctgtccagctcgagcaagcctata 2392

                                                                        
Query: 529  aatgtgaagaatagcttcaagctgtctcagtacaatttgctgttcagaaatgagatcctt 588
             || || ||||||||||||||||||||||||||| |||| || ||||| ||||| |||||
Sbjct: 2391 gatatggagaatagcttcaagctgtctcagtacagtttgttgctcagatatgaggtcctt 2332

                                                                        
Query: 589  gtcttgaacactggcttcagaagaatatctggctgtctccaaaatttcattgccagattg 648
            ||||||||||||||||||    ||||||||||| || |||| ||||||||| ||||| ||
Sbjct: 2331 gtcttgaacactggcttc---cgaatatctggcagtttccataatttcattaccagaatg 2275

                                                                        
Query: 649  aattagaccaacagcacggctttctccatctaacatattgtgtgccagggcacatactgc 708
            ||||||| || ||||||| ||||| |||||||||||| || |||||| |||||||| |||
Sbjct: 2274 aattagagcagcagcacgactttcaccatctaacatactgcgtgccatggcacatattgc 2215

                  
Query: 709  atccga 714
            ||||||
Sbjct: 2214 atccga 2209



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>gb|AY108425.1| Zea mays PCO146490 mRNA sequence
          Length = 775

 Score =  490 bits (247), Expect = e-135
 Identities = 442/507 (87%)
 Strand = Plus / Minus

                                                                       
Query: 228 ttcatatgcactgagccaccttctggtacaaatcctgtggccaattcctgctcatgttgc 287
           ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 609 ttcatatgcactgtgccaccttctgatacaaatcctgtggccaattccggctcatgttgc 550

                                                                       
Query: 288 ttgccacaaggttcgcaatctttgacttgacagcacgcagggtcccatcggtatctctaa 347
           |||| |||||||| || |||||||| |||||||| |||| ||||||||| ||||||||||
Sbjct: 549 ttgctacaaggtttgcgatctttgatttgacagcgcgcaaggtcccatcagtatctctaa 490

                                                                       
Query: 348 cattgtccatgcagtttagagcaaccttcaggagatctggcacacaagcttgaacatggg 407
           ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 489 cattgtcaatgcaatttagagcaaccttcaggagatctggcacgcaagcttgaacatggg 430

                                                                       
Query: 408 gtgataaattcctgaatacatcgactgatacattcggagactgtggatccaaatgaagaa 467
           |||| || |||||||| |  || || |  ||||| |||| ||  || ||||||||||| |
Sbjct: 429 gtgacaagttcctgaaaatgtcaacagtcacatttggagccttggggtccaaatgaagga 370

                                                                       
Query: 468 atggaagtttgatggtttccctcagagcgtcaacagtttgtccagcacgagctagcctat 527
           | || ||  ||||||||||||||| ||| || |||||||| ||||| |||||||||||||
Sbjct: 369 agggtagcctgatggtttccctcaaagcatctacagtttgcccagctcgagctagcctat 310

                                                                       
Query: 528 aaatgtgaagaatagcttcaagctgtctcagtacaatttgctgttcagaaatgagatcct 587
           |||| || ||||||||||||||||||||||| ||| |||| || ||||||||||| ||||
Sbjct: 309 aaatatggagaatagcttcaagctgtctcagcacagtttgttgctcagaaatgaggtcct 250

                                                                       
Query: 588 tgtcttgaacactggcttcagaagaatatctggctgtctccaaaatttcattgccagatt 647
           | |||||||  |||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 249 tctcttgaatgctggcttcagaagagtatctagctgtctccaaaatttcattgccagaat 190

                                                                       
Query: 648 gaattagaccaacagcacggctttctccatctaacatattgtgtgccagggcacatactg 707
           |||||||  || ||||||| || || |||||||||||| |  |||||| |||||| ||||
Sbjct: 189 gaattagggcagcagcacgactctcgccatctaacatactccgtgccatggcacagactg 130

                                      
Query: 708 catccgataaacacttgtttactgtct 734
           |||| || || |||||||||| |||||
Sbjct: 129 catcagacaagcacttgtttattgtct 103



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  323 bits (163), Expect = 5e-85
 Identities = 262/295 (88%)
 Strand = Plus / Plus

                                                                            
Query: 307      ctttgacttgacagcacgcagggtcccatcggtatctctaacattgtccatgcagtttag 366
                |||||||||||| ||||||| ||||||||| |||||||||||||||||||| || |||||
Sbjct: 13075933 ctttgacttgactgcacgcaaggtcccatcagtatctctaacattgtccatacaatttag 13075992

                                                                            
Query: 367      agcaaccttcaggagatctggcacacaagcttgaacatggggtgataaattcctgaatac 426
                ||||||||||| ||||||||||||||||||||||||||| ||||| || || ||||| ||
Sbjct: 13075993 agcaaccttcaagagatctggcacacaagcttgaacatgcggtgacaagtttctgaacac 13076052

                                                                            
Query: 427      atcgactgatacattcggagactgtggatccaaatgaagaaatggaagtttgatggtttc 486
                ||| ||||  ||||| |||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct: 13076053 atcaactgtcacatttggagcctgaggatccaaatgaagaaatgggagtttgatggtttc 13076112

                                                                            
Query: 487      cctcagagcgtcaacagtttgtccagcacgagctagcctataaatgtgaagaatagcttc 546
                ||||| ||| || | ||| |||||||| ||||| |||||||| || || |||||||||||
Sbjct: 13076113 cctcaaagcatctaaagtctgtccagctcgagcaagcctatagatatggagaatagcttc 13076172

                                                                       
Query: 547      aagctgtctcagtacaatttgctgttcagaaatgagatccttgtcttgaacactg 601
                |||||||||||||||| |||| || ||||| ||||| ||||||||||||||||||
Sbjct: 13076173 aagctgtctcagtacagtttgttgctcagatatgaggtccttgtcttgaacactg 13076227



 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                            
Query: 229      tcatatgcactgagccaccttctggtacaaatcctgtggccaattcctgctcatgttgct 288
                |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 13075155 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 13075214

                            
Query: 289      tgccacaaggtt 300
                |||||| |||||
Sbjct: 13075215 tgccacgaggtt 13075226



 Score =  103 bits (52), Expect = 8e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                            
Query: 611      gaatatctggctgtctccaaaatttcattgccagattgaattagaccaacagcacggctt 670
                ||||||||||| || |||| ||||||||| ||||| ||||||||| || ||||||| |||
Sbjct: 13076330 gaatatctggcagtttccataatttcattaccagaatgaattagagcagcagcacgactt 13076389

                                                            
Query: 671      tctccatctaacatattgtgtgccagggcacatactgcatccga 714
                || |||||||||||| || |||||| |||||||| |||||||||
Sbjct: 13076390 tcaccatctaacatactgcgtgccatggcacatattgcatccga 13076433



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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
              from chromosome 3, complete sequence
          Length = 151173

 Score =  323 bits (163), Expect = 5e-85
 Identities = 262/295 (88%)
 Strand = Plus / Minus

                                                                          
Query: 307    ctttgacttgacagcacgcagggtcccatcggtatctctaacattgtccatgcagtttag 366
              |||||||||||| ||||||| ||||||||| |||||||||||||||||||| || |||||
Sbjct: 150683 ctttgacttgactgcacgcaaggtcccatcagtatctctaacattgtccatacaatttag 150624

                                                                          
Query: 367    agcaaccttcaggagatctggcacacaagcttgaacatggggtgataaattcctgaatac 426
              ||||||||||| ||||||||||||||||||||||||||| ||||| || || ||||| ||
Sbjct: 150623 agcaaccttcaagagatctggcacacaagcttgaacatgcggtgacaagtttctgaacac 150564

                                                                          
Query: 427    atcgactgatacattcggagactgtggatccaaatgaagaaatggaagtttgatggtttc 486
              ||| ||||  ||||| |||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct: 150563 atcaactgtcacatttggagcctgaggatccaaatgaagaaatgggagtttgatggtttc 150504

                                                                          
Query: 487    cctcagagcgtcaacagtttgtccagcacgagctagcctataaatgtgaagaatagcttc 546
              ||||| ||| || | ||| |||||||| ||||| |||||||| || || |||||||||||
Sbjct: 150503 cctcaaagcatctaaagtctgtccagctcgagcaagcctatagatatggagaatagcttc 150444

                                                                     
Query: 547    aagctgtctcagtacaatttgctgttcagaaatgagatccttgtcttgaacactg 601
              |||||||||||||||| |||| || ||||| ||||| ||||||||||||||||||
Sbjct: 150443 aagctgtctcagtacagtttgttgctcagatatgaggtccttgtcttgaacactg 150389



 Score =  103 bits (52), Expect = 8e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                          
Query: 611    gaatatctggctgtctccaaaatttcattgccagattgaattagaccaacagcacggctt 670
              ||||||||||| || |||| ||||||||| ||||| ||||||||| || ||||||| |||
Sbjct: 150286 gaatatctggcagtttccataatttcattaccagaatgaattagagcagcagcacgactt 150227

                                                          
Query: 671    tctccatctaacatattgtgtgccagggcacatactgcatccga 714
              || |||||||||||| || |||||| |||||||| |||||||||
Sbjct: 150226 tcaccatctaacatactgcgtgccatggcacatattgcatccga 150183



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  323 bits (163), Expect = 5e-85
 Identities = 262/295 (88%)
 Strand = Plus / Plus

                                                                            
Query: 307      ctttgacttgacagcacgcagggtcccatcggtatctctaacattgtccatgcagtttag 366
                |||||||||||| ||||||| ||||||||| |||||||||||||||||||| || |||||
Sbjct: 13072708 ctttgacttgactgcacgcaaggtcccatcagtatctctaacattgtccatacaatttag 13072767

                                                                            
Query: 367      agcaaccttcaggagatctggcacacaagcttgaacatggggtgataaattcctgaatac 426
                ||||||||||| ||||||||||||||||||||||||||| ||||| || || ||||| ||
Sbjct: 13072768 agcaaccttcaagagatctggcacacaagcttgaacatgcggtgacaagtttctgaacac 13072827

                                                                            
Query: 427      atcgactgatacattcggagactgtggatccaaatgaagaaatggaagtttgatggtttc 486
                ||| ||||  ||||| |||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct: 13072828 atcaactgtcacatttggagcctgaggatccaaatgaagaaatgggagtttgatggtttc 13072887

                                                                            
Query: 487      cctcagagcgtcaacagtttgtccagcacgagctagcctataaatgtgaagaatagcttc 546
                ||||| ||| || | ||| |||||||| ||||| |||||||| || || |||||||||||
Sbjct: 13072888 cctcaaagcatctaaagtctgtccagctcgagcaagcctatagatatggagaatagcttc 13072947

                                                                       
Query: 547      aagctgtctcagtacaatttgctgttcagaaatgagatccttgtcttgaacactg 601
                |||||||||||||||| |||| || ||||| ||||| ||||||||||||||||||
Sbjct: 13072948 aagctgtctcagtacagtttgttgctcagatatgaggtccttgtcttgaacactg 13073002



 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                            
Query: 229      tcatatgcactgagccaccttctggtacaaatcctgtggccaattcctgctcatgttgct 288
                |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 13071930 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 13071989

                            
Query: 289      tgccacaaggtt 300
                |||||| |||||
Sbjct: 13071990 tgccacgaggtt 13072001



 Score =  103 bits (52), Expect = 8e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                            
Query: 611      gaatatctggctgtctccaaaatttcattgccagattgaattagaccaacagcacggctt 670
                ||||||||||| || |||| ||||||||| ||||| ||||||||| || ||||||| |||
Sbjct: 13073105 gaatatctggcagtttccataatttcattaccagaatgaattagagcagcagcacgactt 13073164

                                                            
Query: 671      tctccatctaacatattgtgtgccagggcacatactgcatccga 714
                || |||||||||||| || |||||| |||||||| |||||||||
Sbjct: 13073165 tcaccatctaacatactgcgtgccatggcacatattgcatccga 13073208



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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11,
              complete sequence
          Length = 176637

 Score =  323 bits (163), Expect = 5e-85
 Identities = 262/295 (88%)
 Strand = Plus / Plus

                                                                          
Query: 307    ctttgacttgacagcacgcagggtcccatcggtatctctaacattgtccatgcagtttag 366
              |||||||||||| ||||||| ||||||||| |||||||||||||||||||| || |||||
Sbjct: 153631 ctttgacttgactgcacgcaaggtcccatcagtatctctaacattgtccatacaatttag 153690

                                                                          
Query: 367    agcaaccttcaggagatctggcacacaagcttgaacatggggtgataaattcctgaatac 426
              ||||||||||| ||||||||||||||||||||||||||| ||||| || || ||||| ||
Sbjct: 153691 agcaaccttcaagagatctggcacacaagcttgaacatgcggtgacaagtttctgaacac 153750

                                                                          
Query: 427    atcgactgatacattcggagactgtggatccaaatgaagaaatggaagtttgatggtttc 486
              ||| ||||  ||||| |||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct: 153751 atcaactgtcacatttggagcctgaggatccaaatgaagaaatgggagtttgatggtttc 153810

                                                                          
Query: 487    cctcagagcgtcaacagtttgtccagcacgagctagcctataaatgtgaagaatagcttc 546
              ||||| ||| || | ||| |||||||| ||||| |||||||| || || |||||||||||
Sbjct: 153811 cctcaaagcatctaaagtctgtccagctcgagcaagcctatagatatggagaatagcttc 153870

                                                                     
Query: 547    aagctgtctcagtacaatttgctgttcagaaatgagatccttgtcttgaacactg 601
              |||||||||||||||| |||| || ||||| ||||| ||||||||||||||||||
Sbjct: 153871 aagctgtctcagtacagtttgttgctcagatatgaggtccttgtcttgaacactg 153925



 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                          
Query: 229    tcatatgcactgagccaccttctggtacaaatcctgtggccaattcctgctcatgttgct 288
              |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 152853 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 152912

                          
Query: 289    tgccacaaggtt 300
              |||||| |||||
Sbjct: 152913 tgccacgaggtt 152924



 Score =  103 bits (52), Expect = 8e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                          
Query: 611    gaatatctggctgtctccaaaatttcattgccagattgaattagaccaacagcacggctt 670
              ||||||||||| || |||| ||||||||| ||||| ||||||||| || ||||||| |||
Sbjct: 154028 gaatatctggcagtttccataatttcattaccagaatgaattagagcagcagcacgactt 154087

                                                          
Query: 671    tctccatctaacatattgtgtgccagggcacatactgcatccga 714
              || |||||||||||| || |||||| |||||||| |||||||||
Sbjct: 154088 tcaccatctaacatactgcgtgccatggcacatattgcatccga 154131



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>gb|AC148340.3| Medicago truncatula chromosome 2 BAC clone mth2-22d10, complete
             sequence
          Length = 105618

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 365   agagcaaccttcaggagatctggcacacaagcttgaacatggggtgataaatt 417
             ||||||||||||| ||| ||||| | ||||||||| ||||| || ||||||||
Sbjct: 48601 agagcaaccttcaagaggtctggtatacaagcttggacatgaggagataaatt 48653



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                         
Query: 622   tgtctccaaaatttcattgccagattgaattagaccaacagcacggctttctccatctaa 681
             |||||||||||| || |||||||| || || |||||| |||  ||||| || ||||||||
Sbjct: 49438 tgtctccaaaatctcgttgccagaatggataagaccagcagtccggctctcaccatctaa 49497

              
Query: 682   c 682
             |
Sbjct: 49498 c 49498



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>emb|Z95331.2|HS941F9 Human DNA sequence from clone CTA-941F9 on chromosome 22q13, complete
              sequence
          Length = 127587

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 136    ccttcaactacctgttcaaatg 157
              ||||||||||||||||||||||
Sbjct: 116078 ccttcaactacctgttcaaatg 116057



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>gb|AC015604.5|AC015604 Homo sapiens, clone RP11-45D18, complete sequence
          Length = 172914

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 342    ctctaacattgtccatgcagtttaga 367
              |||||||||||| |||||||||||||
Sbjct: 139697 ctctaacattgtacatgcagtttaga 139672



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>dbj|AB051572.1| Aphis gossypii mRNA for GrpE, complete cds
          Length = 881

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 135 accttcaactacctgttcaaat 156
           ||||||||||||||||||||||
Sbjct: 666 accttcaactacctgttcaaat 645



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>dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1433G4, complete
              sequence
          Length = 175784

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 342    ctctaacattgtccatgcagtttaga 367
              |||||||||||| |||||||||||||
Sbjct: 133427 ctctaacattgtacatgcagtttaga 133452



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>emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 88711

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    aacaagacagacatggttcca 96
             |||||||||||||||||||||
Sbjct: 87086 aacaagacagacatggttcca 87106



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>emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chromosome 6 Contains
           the 3' part of a novel gene, complete sequence
          Length = 157929

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  aacaagacagacatggttcca 96
           |||||||||||||||||||||
Sbjct: 375 aacaagacagacatggttcca 395



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>emb|AL356500.14| Human DNA sequence from clone RP11-307G7 on chromosome 1, complete
             sequence
          Length = 41741

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 456   ccaaatgaagaaatggaagtttgat 480
             ||||||||||||||||||| |||||
Sbjct: 34755 ccaaatgaagaaatggaaggttgat 34731



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>gb|AC128692.11| Homo sapiens 3 BAC RP11-743G11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 83627

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 408   gtgataaattcctgaatacat 428
             |||||||||||||||||||||
Sbjct: 32634 gtgataaattcctgaatacat 32614



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>emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chromosome 11 Contains
           the 3' end of the Slit3 gene for slit homolog 3
           (Drosophila), complete sequence
          Length = 113164

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 gatagcccatttccctagcac 207
           |||||||||||||||||||||
Sbjct: 16  gatagcccatttccctagcac 36



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>emb|AL732401.6| Mouse DNA sequence from clone RP23-405K20 on chromosome 11 Contains
             part of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 89624

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   gatagcccatttccctagcac 207
             |||||||||||||||||||||
Sbjct: 87640 gatagcccatttccctagcac 87660



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>gb|AC106779.3| Homo sapiens chromosome 16 clone RP11-343H19, complete sequence
          Length = 158297

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    tgaaaagtggcagttttcttg 46
             |||||||||||||||||||||
Sbjct: 92560 tgaaaagtggcagttttcttg 92540



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>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    aaacaagacagacatggttcc 95
             |||||||||||||||||||||
Sbjct: 10044 aaacaagacagacatggttcc 10064



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>gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 209961

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    gatagcccatttccctagcac 207
              |||||||||||||||||||||
Sbjct: 113002 gatagcccatttccctagcac 112982



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>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    aaacaagacagacatggttcc 95
             |||||||||||||||||||||
Sbjct: 97179 aaacaagacagacatggttcc 97199



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>gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 146120

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   gatagcccatttccctagcac 207
             |||||||||||||||||||||
Sbjct: 94042 gatagcccatttccctagcac 94022



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>gb|AC003114.1|T12M4 Arabidopsis thaliana chromosome 1 BAC T12M4 sequence, complete
            sequence
          Length = 59261

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 144  tacctgttcaaatggtgttgg 164
            |||||||||||||||||||||
Sbjct: 6168 tacctgttcaaatggtgttgg 6188


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,262,348
Number of Sequences: 3902068
Number of extensions: 7262348
Number of successful extensions: 141249
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141131
Number of HSP's gapped (non-prelim): 117
length of query: 734
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 711
effective length of database: 17,143,297,704
effective search space: 12188884667544
effective search space used: 12188884667544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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