ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdb14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 200 6e-49
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 200 6e-49
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 186 9e-45
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 119 2e-24
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 119 2e-24
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 66 2e-08
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 62 3e-07
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.079
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.079
10gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 44 0.079
11dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 44 0.079
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.079
13dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.079
14dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.079
15dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.079
16dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.079
17dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.079
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.079
19dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 44 0.079
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 44 0.079
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.31
22gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.31
23emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.31
24gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 1.2
25gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 1.2
26gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 1.2
27dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 1.2
28emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 1.2
29gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 1.2
30gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal... 38 4.9
31gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence 38 4.9
32gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, com... 38 4.9
33emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in... 38 4.9
34gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome... 38 4.9
35emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230... 38 4.9
36gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome... 38 4.9
37ref|XM_647265.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 38 4.9
38gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 38 4.9
39gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome ... 38 4.9
40emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in... 38 4.9
41gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 38 4.9
42dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 38 4.9
43gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complet... 38 4.9
44gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosom... 38 4.9
45gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosom... 38 4.9
46gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 38 4.9
47emb|CR937049.3| CH230-323M7, complete sequence 38 4.9 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  200 bits (101), Expect = 6e-49
 Identities = 108/109 (99%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tagagatatat-aacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtag 59
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 tagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtag 7672

                                                             
Query: 60   gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 108
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 7623
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  200 bits (101), Expect = 6e-49
 Identities = 108/109 (99%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tagagatatat-aacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtag 59
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 tagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtag 1312

                                                             
Query: 60   gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 108
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 1263
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  186 bits (94), Expect = 9e-45
 Identities = 108/110 (98%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tagagatatat-aacaaaacatgcccagcaatcgcttggatgcgatgcggacttag-gta 58
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1680 tagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtgta 1621

                                                              
Query: 59   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 1571
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  119 bits (60), Expect = 2e-24
 Identities = 95/104 (91%), Gaps = 7/104 (6%)
 Strand = Plus / Minus

                                                                       
Query: 11  taacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaa 64
           ||||||||||||||||||||||||||||||||||||||| |||||||||     | ||||
Sbjct: 740 taacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataaa 681

                                                       
Query: 65  acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 108
           |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 680 acatcagatatt-aaattggcatgcttaaaaggtgtaaaggcag 638
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  119 bits (60), Expect = 2e-24
 Identities = 95/104 (91%), Gaps = 7/104 (6%)
 Strand = Plus / Minus

                                                                        
Query: 11   taacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaa 64
            ||||||||||||||||||||||||||||||||||||||| |||||||||     | ||||
Sbjct: 1590 taacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataaa 1531

                                                        
Query: 65   acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcag 108
            |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1530 acatcagatatt-aaattggcatgcttaaaaggtgtaaaggcag 1488
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 83/97 (85%), Gaps = 7/97 (7%)
 Strand = Plus / Minus

                                                                        
Query: 19   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 72
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                 
Query: 73   -tattaaaagtggcatgcttaaaaggtgtaaaggcag 108
             || | |||||||||||||||||||||||||||||||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcag 1497
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                           
Query: 78   aaagtggcatgcttaaaaggtgtaaaggcag 108
            |||||||||||||||||||||||||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcag 1459
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 87     tgcttaaaaggtgtaaaggcag 108
              ||||||||||||||||||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcag 107179
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 87    tgcttaaaaggtgtaaaggcag 108
             ||||||||||||||||||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcag 29060
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcag 1499
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcag 1409
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 87       tgcttaaaaggtgtaaaggcag 108
                ||||||||||||||||||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcag 28302322
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcag 1541
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcag 1493
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcag 1531
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcag 1530
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcag 1314
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 87       tgcttaaaaggtgtaaaggcag 108
                ||||||||||||||||||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcag 28284771
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcag 1535
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   tgcttaaaaggtgtaaaggcag 108
            ||||||||||||||||||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcag 1444
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 63      aaacatcagatattaaaagtg 83
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 63      aaacatcagatattaaaagtg 83
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     aaacatcagatattaaaagtg 83
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     tcagatattaaaagtggcat 87
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     tcagatattaaaagtggcat 87
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tcagatattaaaagtggcat 87
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    aaacatgcccagcaatcgcttgga 39
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tggcatgcttaaaaggtgta 101
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 67     atcagatattaaaagtggcatgct 90
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852
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>gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal RNA gene, partial
           sequence
          Length = 1463

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 60  gtaaaacatcagatattaa 78
           |||||||||||||||||||
Sbjct: 183 gtaaaacatcagatattaa 165
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>gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence
          Length = 181948

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     taggtaggtaaaacatcag 71
              |||||||||||||||||||
Sbjct: 151143 taggtaggtaaaacatcag 151125
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>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 73     tattaaaagtggcatgcttaaaa 95
              |||||||||||||| ||||||||
Sbjct: 167602 tattaaaagtggcaggcttaaaa 167580
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>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3,
             complete sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    aaagtggcatgcttaaaag 96
             |||||||||||||||||||
Sbjct: 15943 aaagtggcatgcttaaaag 15925
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>gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome 14, complete sequence
          Length = 171069

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 57     taggtaaaacatcagatat 75
              |||||||||||||||||||
Sbjct: 126442 taggtaaaacatcagatat 126424
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>emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230-139I21, complete sequence
          Length = 212885

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   aaacatcagatattaaaag 81
            |||||||||||||||||||
Sbjct: 3858 aaacatcagatattaaaag 3876
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>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence
          Length = 188132

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    gtaaaacatcagatattaa 78
             |||||||||||||||||||
Sbjct: 48495 gtaaaacatcagatattaa 48513
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>ref|XM_647265.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (121.t00012)
            partial mRNA
          Length = 1749

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    gagatatataacaaaacat 21
            |||||||||||||||||||
Sbjct: 1612 gagatatataacaaaacat 1630
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>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 70    agatattaaaagtggcatgctta 92
             |||| ||||||||||||||||||
Sbjct: 51524 agatgttaaaagtggcatgctta 51546
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>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence
          Length = 208009

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 73     tattaaaagtggcatgcttaaaa 95
              |||||||||||||| ||||||||
Sbjct: 193364 tattaaaagtggcaggcttaaaa 193386
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>emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in linkage group 22,
              complete sequence
          Length = 191642

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     taggtaggtaaaacatcag 71
              |||||||||||||||||||
Sbjct: 151077 taggtaggtaaaacatcag 151059
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 41      gcgatgcggacttaggtag 59
               |||||||||||||||||||
Sbjct: 2937451 gcgatgcggacttaggtag 2937469
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>dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930027O03 product:weakly similar to L1
           RETROTRANSPOSON, TF SUBFAMILY L1MD-TF29, PARTIAL
           SEQUENCE [Mus musculus domesticus], full insert sequence
          Length = 4205

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  ggtaaaacatcagatatta 77
           |||||||||||||||||||
Sbjct: 712 ggtaaaacatcagatatta 694
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>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence
          Length = 157417

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    aaaacatcagatattaaaa 80
             |||||||||||||||||||
Sbjct: 68501 aaaacatcagatattaaaa 68519
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>gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosome 14, complete sequence
          Length = 212894

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     taggtaaaacatcagatat 75
              |||||||||||||||||||
Sbjct: 200300 taggtaaaacatcagatat 200318
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>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete
             sequence
          Length = 177886

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    ggtaaaacatcagatatta 77
             |||||||||||||||||||
Sbjct: 55690 ggtaaaacatcagatatta 55708
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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 62     aaaacatcagatattaaaa 80
              |||||||||||||||||||
Sbjct: 109395 aaaacatcagatattaaaa 109413
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>emb|CR937049.3| CH230-323M7, complete sequence
          Length = 198674

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    aaacatcagatattaaaag 81
             |||||||||||||||||||
Sbjct: 21429 aaacatcagatattaaaag 21411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 969,882
Number of Sequences: 3902068
Number of extensions: 969882
Number of successful extensions: 68505
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68325
Number of HSP's gapped (non-prelim): 177
length of query: 108
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 87
effective length of database: 17,151,101,840
effective search space: 1492145860080
effective search space used: 1492145860080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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