ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasda20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469973.1| Oryza sativa (japonica cultivar-group), mRNA 281 2e-72
2dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 2e-72
3dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 2e-72
4gb|AY104601.1| Zea mays PCO085879 mRNA sequence 232 1e-57
5gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence 208 2e-50
6gb|BT016441.1| Zea mays clone Contig274 mRNA sequence 206 7e-50
7gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence 200 5e-48
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 184 3e-43
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 184 3e-43
10gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom... 184 3e-43
11gb|AY389644.1| Hyacinthus orientalis vacuolar protein sorting-as... 78 5e-11
12ref|NM_106235.3| Arabidopsis thaliana unknown protein AT1G75850 ... 60 1e-05
13emb|CR936327.2| Medicago truncatula chromosome 5 clone mte1-68g1... 52 0.003
14emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in... 44 0.64
15emb|AJ719889.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.64
16gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete seq... 44 0.64
17gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosom... 44 0.64
18ref|NM_114990.2| Arabidopsis thaliana unknown protein AT3G51310 ... 42 2.5
19emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chro... 42 2.5
20gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 42 2.5
21gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 42 2.5
22emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in... 42 2.5
23emb|BX825234.1|CNS0A66M Arabidopsis thaliana Full-length cDNA Co... 42 2.5
24gb|AC153773.3| Loxodonta africana clone VMRC15-519D8, complete s... 42 2.5
25gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8,... 42 2.5
26dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, comple... 42 2.5
27emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chro... 42 2.5
28gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete se... 42 2.5
29gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, c... 42 2.5
30dbj|AP001998.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.5
31dbj|AP006427.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.5 
>ref|XM_469973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2851

 Score =  281 bits (142), Expect = 2e-72
 Identities = 253/290 (87%)
 Strand = Plus / Minus

                                                                        
Query: 437  ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 496
            |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2420 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2361

                                                                        
Query: 497  tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 556
             |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 2360 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2301

                                                                        
Query: 557  cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 616
            |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 2300 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2241

                                                                        
Query: 617  tcctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatcc 676
            ||||||||| |||||||||| |||||||||||||||||| ||||||||   |||||||||
Sbjct: 2240 tcctttctcgaagaagtacaaatacttgttcaaaatttcgataaatagcgcgacagatcc 2181

                                                              
Query: 677  gctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 726
            ||| |||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct: 2180 gctacttccccttgttacattagccatctgttgagcggcatttgcaattc 2131



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 114  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 172
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2716 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2658

                                             
Query: 173  gcttcccaaagagtacagcttattaccacctga 205
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2657 gcttccc-aagggtaaagcttattgccacctga 2626
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>dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P21, full
            insert sequence
          Length = 2931

 Score =  281 bits (142), Expect = 2e-72
 Identities = 253/290 (87%)
 Strand = Plus / Minus

                                                                        
Query: 437  ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 496
            |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2512 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2453

                                                                        
Query: 497  tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 556
             |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 2452 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2393

                                                                        
Query: 557  cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 616
            |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 2392 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2333

                                                                        
Query: 617  tcctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatcc 676
            ||||||||| |||||||||| |||||||||||||||||| ||||||||   |||||||||
Sbjct: 2332 tcctttctcgaagaagtacaaatacttgttcaaaatttcgataaatagcgcgacagatcc 2273

                                                              
Query: 677  gctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 726
            ||| |||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct: 2272 gctacttccccttgttacattagccatctgttgagcggcatttgcaattc 2223



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 114  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 172
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2808 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2750

                                             
Query: 173  gcttcccaaagagtacagcttattaccacctga 205
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2749 gcttccc-aagggtaaagcttattgccacctga 2718
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>dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M08, full
            insert sequence
          Length = 3011

 Score =  281 bits (142), Expect = 2e-72
 Identities = 253/290 (87%)
 Strand = Plus / Minus

                                                                        
Query: 437  ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 496
            |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2580 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2521

                                                                        
Query: 497  tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 556
             |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 2520 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2461

                                                                        
Query: 557  cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 616
            |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 2460 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2401

                                                                        
Query: 617  tcctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatcc 676
            ||||||||| |||||||||| |||||||||||||||||| ||||||||   |||||||||
Sbjct: 2400 tcctttctcgaagaagtacaaatacttgttcaaaatttcgataaatagcgcgacagatcc 2341

                                                              
Query: 677  gctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 726
            ||| |||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct: 2340 gctacttccccttgttacattagccatctgttgagcggcatttgcaattc 2291



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 114  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 172
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2876 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2818

                                             
Query: 173  gcttcccaaagagtacagcttattaccacctga 205
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2817 gcttccc-aagggtaaagcttattgccacctga 2786
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>gb|AY104601.1| Zea mays PCO085879 mRNA sequence
          Length = 1686

 Score =  232 bits (117), Expect = 1e-57
 Identities = 246/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 438  tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 497
            |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| 
Sbjct: 1155 tttatctgttcatatttttcgcctatgctcccacctttctgcttctgaaattcaatgtac 1096

                                                                        
Query: 498  cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 557
            || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 1095 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 1036

                                                                        
Query: 558  ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 617
            ||||| || || |||| ||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 1035 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 976

                                                                        
Query: 618  cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 677
            |||||||||||||||||||  ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 975  cctttctcaaagaagtacaagtacttgttcaaaatttcaataaatagggttacagatcca 916

                                                             
Query: 678  ctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 726
            ||||| ||| |||   || ||||||| ||||||||||||||||| ||||
Sbjct: 915  ctgctcccccttgtagcactagccatctgttgagcagcatttgcgattc 867



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 148  acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 205
            ||||||||| ||||||||||||||| ||| |||||||   |||||||||| ||||||||
Sbjct: 1421 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 1363
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>gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence
          Length = 2855

 Score =  208 bits (105), Expect = 2e-50
 Identities = 243/289 (84%)
 Strand = Plus / Minus

                                                                        
Query: 438  tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 497
            ||||| |||||||| ||||| |||||  ||||||||||||||||||| ||||| ||||| 
Sbjct: 2482 tttatttgttcatatttttcgcctatagttccacctttctgcttctgaaattcaatgtac 2423

                                                                        
Query: 498  cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 557
            || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 2422 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 2363

                                                                        
Query: 558  ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 617
            ||||| || || |||| ||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 2362 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 2303

                                                                        
Query: 618  cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 677
            |||||||||||||||||||  ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 2302 cctttctcaaagaagtacaagtacttgttcaaaatttcaataaatagggttacagatcca 2243

                                                             
Query: 678  ctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 726
            ||||| ||| |||   |  ||||||| ||||||||||||||||| ||||
Sbjct: 2242 ctgctcccccttgtagcgctagccatctgttgagcagcatttgcgattc 2194
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>gb|BT016441.1| Zea mays clone Contig274 mRNA sequence
          Length = 1532

 Score =  206 bits (104), Expect = 7e-50
 Identities = 239/284 (84%)
 Strand = Plus / Minus

                                                                        
Query: 438  tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 497
            ||||| |||||||| ||||| |||||  ||||||||||||||||||| ||||| ||||| 
Sbjct: 1165 tttatttgttcatatttttcgcctatagttccacctttctgcttctgaaattcaatgtac 1106

                                                                        
Query: 498  cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 557
            || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 1105 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 1046

                                                                        
Query: 558  ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 617
            ||||| || || |||| ||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 1045 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 986

                                                                        
Query: 618  cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 677
            |||||||||||||||||||  ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 985  cctttctcaaagaagtacaagtacttgttcaaaatttcaataaatagggttacagatcca 926

                                                        
Query: 678  ctgcttccctttgatacattagccatttgttgagcagcatttgc 721
            ||||| ||| |||   |  ||||||| |||||||||||||||||
Sbjct: 925  ctgctcccccttgtagcgctagccatctgttgagcagcatttgc 882
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>gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence
          Length = 1093

 Score =  200 bits (101), Expect = 5e-48
 Identities = 242/289 (83%)
 Strand = Plus / Minus

                                                                       
Query: 438 tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 497
           |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| 
Sbjct: 717 tttatctgttcatatttttcgcctatgctcccacctttctgcttctgaaattcaatgtac 658

                                                                       
Query: 498 cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 557
           || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 657 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 598

                                                                       
Query: 558 ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 617
           ||||| || || |||| ||| ||||||||||| || || || || ||||| || ||||||
Sbjct: 597 ttctccgttctaatcaattcaatcaaatcttgaatcacggtatttgtgatctgcggaatt 538

                                                                       
Query: 618 cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 677
           |||||||||||||||||||  |||||||||||||| |||||||||||| | || ||||| 
Sbjct: 537 cctttctcaaagaagtacaagtacttgttcaaaatctcaataaatagagttacggatcca 478

                                                            
Query: 678 ctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 726
           ||||||||| |||   || ||||||| ||||||||||||||||| ||||
Sbjct: 477 ctgcttccccttgtagcactagccatctgttgagcagcatttgcgattc 429



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 148 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 205
           ||||||||| ||||||||||||||| ||| |||||||   |||||||||| ||||||||
Sbjct: 983 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 925
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  184 bits (93), Expect = 3e-43
 Identities = 177/205 (86%)
 Strand = Plus / Minus

                                                                            
Query: 437      ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 496
                |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 33128712 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 33128653

                                                                            
Query: 497      tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 556
                 |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 33128652 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 33128593

                                                                            
Query: 557      cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 616
                |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 33128592 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 33128533

                                         
Query: 617      tcctttctcaaagaagtacagatac 641
                ||||||||| |||||||||| ||||
Sbjct: 33128532 tcctttctcgaagaagtacaaatac 33128508



 Score =  103 bits (52), Expect = 8e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                            
Query: 639      tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 698
                ||||||||||||||||| ||||||||   |||||||||||| |||||| ||| |||||||
Sbjct: 33128428 tacttgttcaaaatttcgataaatagcgcgacagatccgctacttccccttgttacatta 33128369

                                            
Query: 699      gccatttgttgagcagcatttgcaattc 726
                ||||| |||||||| |||||||||||||
Sbjct: 33128368 gccatctgttgagcggcatttgcaattc 33128341



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                            
Query: 114      aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 172
                ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 33129008 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33128950

                                                 
Query: 173      gcttcccaaagagtacagcttattaccacctga 205
                ||||||| ||| ||| |||||||| ||||||||
Sbjct: 33128949 gcttccc-aagggtaaagcttattgccacctga 33128918
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  184 bits (93), Expect = 3e-43
 Identities = 177/205 (86%)
 Strand = Plus / Minus

                                                                            
Query: 437      ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 496
                |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 33219222 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 33219163

                                                                            
Query: 497      tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 556
                 |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 33219162 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 33219103

                                                                            
Query: 557      cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 616
                |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 33219102 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 33219043

                                         
Query: 617      tcctttctcaaagaagtacagatac 641
                ||||||||| |||||||||| ||||
Sbjct: 33219042 tcctttctcgaagaagtacaaatac 33219018



 Score =  103 bits (52), Expect = 8e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                            
Query: 639      tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 698
                ||||||||||||||||| ||||||||   |||||||||||| |||||| ||| |||||||
Sbjct: 33218938 tacttgttcaaaatttcgataaatagcgcgacagatccgctacttccccttgttacatta 33218879

                                            
Query: 699      gccatttgttgagcagcatttgcaattc 726
                ||||| |||||||| |||||||||||||
Sbjct: 33218878 gccatctgttgagcggcatttgcaattc 33218851



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                            
Query: 114      aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 172
                ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 33219518 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33219460

                                                 
Query: 173      gcttcccaaagagtacagcttattaccacctga 205
                ||||||| ||| ||| |||||||| ||||||||
Sbjct: 33219459 gcttccc-aagggtaaagcttattgccacctga 33219428
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>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
              sequence
          Length = 144487

 Score =  184 bits (93), Expect = 3e-43
 Identities = 177/205 (86%)
 Strand = Plus / Plus

                                                                          
Query: 437    ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 496
              |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 115843 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 115902

                                                                          
Query: 497    tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 556
               |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 115903 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 115962

                                                                          
Query: 557    cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 616
              |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 115963 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 116022

                                       
Query: 617    tcctttctcaaagaagtacagatac 641
              ||||||||| |||||||||| ||||
Sbjct: 116023 tcctttctcgaagaagtacaaatac 116047



 Score =  103 bits (52), Expect = 8e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                          
Query: 639    tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 698
              ||||||||||||||||| ||||||||   |||||||||||| |||||| ||| |||||||
Sbjct: 116127 tacttgttcaaaatttcgataaatagcgcgacagatccgctacttccccttgttacatta 116186

                                          
Query: 699    gccatttgttgagcagcatttgcaattc 726
              ||||| |||||||| |||||||||||||
Sbjct: 116187 gccatctgttgagcggcatttgcaattc 116214



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                          
Query: 114    aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 172
              ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 115547 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 115605

                                               
Query: 173    gcttcccaaagagtacagcttattaccacctga 205
              ||||||| ||| ||| |||||||| ||||||||
Sbjct: 115606 gcttccc-aagggtaaagcttattgccacctga 115637
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>gb|AY389644.1| Hyacinthus orientalis vacuolar protein sorting-associated protein
           mRNA, partial cds
          Length = 709

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                       
Query: 468 ccacctttctgcttctggaattcgatgtatcgtagagtgcttgcaaagaaagcttcggca 527
           ||||| || ||||||||||| | |||||||| ||||||||| ||||||||||| || |||
Sbjct: 205 ccacccttttgcttctggaaatggatgtatcttagagtgctagcaaagaaagcgtctgca 146

                      
Query: 528 gatggatcaga 538
           |||||||||||
Sbjct: 145 gatggatcaga 135



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 616 ttcctttctcaaagaagtacagatacttgttcaaaatttcaa 657
           ||||||| |||||||||||||| ||||| ||| | |||||||
Sbjct: 56  ttcctttttcaaagaagtacaggtacttattcgatatttcaa 15
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>ref|NM_106235.3| Arabidopsis thaliana unknown protein AT1G75850 mRNA, complete cds
          Length = 2727

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                        
Query: 603  gtgatttgtggaattcctttctcaaagaagtacagatacttgttcaaaatttcaataaat 662
            ||||| |||||| | ||||||||||||||||| |  ||||||||||| ||||||| ||| 
Sbjct: 2313 gtgatatgtggattccctttctcaaagaagtaaatgtacttgttcaagatttcaacaaac 2254

                                                              
Query: 663  agaatgacagatccgctgcttccctttgatacattagccatttgttgagc 712
            ||  |||| | ||||||||| ||  | | | || ||||||||||||||||
Sbjct: 2253 agcgtgactggtccgctgctacctctggttgcactagccatttgttgagc 2204
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>emb|CR936327.2| Medicago truncatula chromosome 5 clone mte1-68g1, COMPLETE SEQUENCE
          Length = 116729

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 639   tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 698
             |||||||||||||| ||||| || || || || |||||| |||| ||   || | |||| 
Sbjct: 53823 tacttgttcaaaatctcaatgaagagcattactgatccggtgctacctcgtgctgcattt 53882

                                       
Query: 699   gccatttgttgagcagcatttgcaat 724
             ||||||||||| ||||||||||||||
Sbjct: 53883 gccatttgttgtgcagcatttgcaat 53908
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>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8,
              complete sequence
          Length = 182233

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 100    tgcaaaataactagaagaaaaa 121
              ||||||||||||||||||||||
Sbjct: 159389 tgcaaaataactagaagaaaaa 159410
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>emb|AJ719889.1| Gallus gallus mRNA for hypothetical protein, clone 7n24
          Length = 1342

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 645  ttcaaaatttcaataaatagaatgac 670
            ||||||| ||||||||||||||||||
Sbjct: 1175 ttcaaaacttcaataaatagaatgac 1150
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>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence
          Length = 116601

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 692   tacattagccatttgttgagcagcatttgc 721
             |||||| |||||||| ||||||||||||||
Sbjct: 11671 tacattggccatttgctgagcagcatttgc 11642
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>gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosome ul, complete
             sequence
          Length = 196838

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 645   ttcaaaatttcaataaatagaatgac 670
             ||||||| ||||||||||||||||||
Sbjct: 47859 ttcaaaacttcaataaatagaatgac 47834
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>ref|NM_114990.2| Arabidopsis thaliana unknown protein AT3G51310 mRNA, complete cds
          Length = 2463

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 616  ttcctttctcaaagaagtacagatacttgttca 648
            |||||||||| | |||||| |||||||||||||
Sbjct: 2164 ttcctttctccaggaagtagagatacttgttca 2132
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>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete
             sequence
          Length = 216921

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 46    agtctgataaatataaatatg 66
             |||||||||||||||||||||
Sbjct: 45732 agtctgataaatataaatatg 45712
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 273     tcagaaaccacaaactttgca 293
               |||||||||||||||||||||
Sbjct: 2404555 tcagaaaccacaaactttgca 2404535
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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete
             sequence
          Length = 205862

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    agtctgataaatataaatatg 66
             |||||||||||||||||||||
Sbjct: 28527 agtctgataaatataaatatg 28547
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>emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in linkage group 17,
             complete sequence
          Length = 109705

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 103   aaaataactagaagaaaaaggaata 127
             ||||||| |||||||||||||||||
Sbjct: 86074 aaaataagtagaagaaaaaggaata 86098
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>emb|BX825234.1|CNS0A66M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL21ZG11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 992

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 616 ttcctttctcaaagaagtacagatacttgttca 648
           |||||||||| | |||||| |||||||||||||
Sbjct: 662 ttcctttctccaggaagtagagatacttgttca 630
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>gb|AC153773.3| Loxodonta africana clone VMRC15-519D8, complete sequence
          Length = 86658

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 647   caaaatttcaataaatagaat 667
             |||||||||||||||||||||
Sbjct: 55643 caaaatttcaataaatagaat 55623
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>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence
          Length = 197900

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 165    agacctgagcttcccaaagag 185
              |||||||||||||||||||||
Sbjct: 183590 agacctgagcttcccaaagag 183570
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>dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, complete cds
          Length = 2177

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 agcttcccaaagagtacagct 192
           |||||||||||||||||||||
Sbjct: 688 agcttcccaaagagtacagct 708
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>emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chromosome X, complete
            sequence
          Length = 74439

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 101  gcaaaataactagaagaaaaaggaa 125
            |||||||| ||||||||||||||||
Sbjct: 5438 gcaaaatacctagaagaaaaaggaa 5414
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>gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete sequence
          Length = 3318

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 108  aactagaagaaaaaggaatat 128
            |||||||||||||||||||||
Sbjct: 2429 aactagaagaaaaaggaatat 2409
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>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence
          Length = 148280

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   agacctgagcttcccaaagag 185
             |||||||||||||||||||||
Sbjct: 29884 agacctgagcttcccaaagag 29864
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>dbj|AP001998.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-367C21, complete
             sequence
          Length = 161529

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 434   agcttttatctgttcatactt 454
             |||||||||||||||||||||
Sbjct: 90000 agcttttatctgttcatactt 90020
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>dbj|AP006427.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45A23, TM0318,
              complete sequence
          Length = 117676

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 621    ttctcaaagaagtacagatac 641
              |||||||||||||||||||||
Sbjct: 105435 ttctcaaagaagtacagatac 105415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,186,450
Number of Sequences: 3902068
Number of extensions: 8186450
Number of successful extensions: 179555
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179328
Number of HSP's gapped (non-prelim): 213
length of query: 732
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 709
effective length of database: 17,143,297,704
effective search space: 12154598072136
effective search space used: 12154598072136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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