| Clone Name | baal41p19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 198 bits (100), Expect = 1e-47 Identities = 184/212 (86%) Strand = Plus / Plus Query: 27 gcggaacaggcctgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatg 86 ||||| ||||| |||||||| ||||||||||||||||| ||||||| || ||||| ||| Sbjct: 2978435 gcggagcaggcttgctacctgccgtgcaccgatgacggtttgccggtgatcggggagatg 2978494 Query: 87 cccggggtgaagggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgct 146 || || |||||||| ||||| || || ||||||||||||||||||||||||||||||||| Sbjct: 2978495 cctggagtgaagggttgctatgtcgccaccgggcacagctgctgggggatcctcaatgct 2978554 Query: 147 ccagttaccggtgcagcactcgccgagctcatcctcgatgggcaggccaagatcgttgat 206 |||| |||||||| || ||||| |||||||||||||| || | ||||||||||| ||| Sbjct: 2978555 ccagccaccggtgccgctctcgcagagctcatcctcgacggcgatgccaagatcgtcgat 2978614 Query: 207 cttgcgcccttcagcccggcaagatttctcaa 238 || ||||| |||||||| ||||| |||||||| Sbjct: 2978615 ctcgcgccgttcagcccagcaaggtttctcaa 2978646
>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0024L18 Length = 150128 Score = 198 bits (100), Expect = 1e-47 Identities = 184/212 (86%) Strand = Plus / Plus Query: 27 gcggaacaggcctgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatg 86 ||||| ||||| |||||||| ||||||||||||||||| ||||||| || ||||| ||| Sbjct: 24490 gcggagcaggcttgctacctgccgtgcaccgatgacggtttgccggtgatcggggagatg 24549 Query: 87 cccggggtgaagggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgct 146 || || |||||||| ||||| || || ||||||||||||||||||||||||||||||||| Sbjct: 24550 cctggagtgaagggttgctatgtcgccaccgggcacagctgctgggggatcctcaatgct 24609 Query: 147 ccagttaccggtgcagcactcgccgagctcatcctcgatgggcaggccaagatcgttgat 206 |||| |||||||| || ||||| |||||||||||||| || | ||||||||||| ||| Sbjct: 24610 ccagccaccggtgccgctctcgcagagctcatcctcgacggcgatgccaagatcgtcgat 24669 Query: 207 cttgcgcccttcagcccggcaagatttctcaa 238 || ||||| |||||||| ||||| |||||||| Sbjct: 24670 ctcgcgccgttcagcccagcaaggtttctcaa 24701
>dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D11, full insert sequence Length = 1364 Score = 198 bits (100), Expect = 1e-47 Identities = 184/212 (86%) Strand = Plus / Plus Query: 27 gcggaacaggcctgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatg 86 ||||| ||||| |||||||| ||||||||||||||||| ||||||| || ||||| ||| Sbjct: 964 gcggagcaggcttgctacctgccgtgcaccgatgacggtttgccggtgatcggggagatg 1023 Query: 87 cccggggtgaagggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgct 146 || || |||||||| ||||| || || ||||||||||||||||||||||||||||||||| Sbjct: 1024 cctggagtgaagggttgctatgtcgccaccgggcacagctgctgggggatcctcaatgct 1083 Query: 147 ccagttaccggtgcagcactcgccgagctcatcctcgatgggcaggccaagatcgttgat 206 |||| |||||||| || ||||| |||||||||||||| || | ||||||||||| ||| Sbjct: 1084 ccagccaccggtgccgctctcgcagagctcatcctcgacggcgatgccaagatcgtcgat 1143 Query: 207 cttgcgcccttcagcccggcaagatttctcaa 238 || ||||| |||||||| ||||| |||||||| Sbjct: 1144 ctcgcgccgttcagcccagcaaggtttctcaa 1175
>gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence Length = 711 Score = 170 bits (86), Expect = 3e-39 Identities = 198/234 (84%), Gaps = 1/234 (0%) Strand = Plus / Plus Query: 5 gaggagggcgcagnaggtagtcgcggaacaggcctgctacctcccgtgcaccgatgacgg 64 ||||||||||| | |||| |||||||| ||||| |||||||| |||||||||| ||||| Sbjct: 420 gaggagggcgctg-aggtggtcgcggagcaggcgtgctacctgccgtgcaccgccgacgg 478 Query: 65 gctgccggtcattggggaaatgcccggggtgaagggatgctacgttgcaaccgggcacag 124 |||||||||||| ||||| || || || ||||| || ||||| || || || || ||||| Sbjct: 479 gctgccggtcatcggggagataccaggcgtgaaagggtgctatgtggccacgggccacag 538 Query: 125 ctgctgggggatcctcaatgctccagttaccggtgcagcactcgccgagctcatcctcga 184 ||||||||| |||||||||| ||| | ||||| ||||| ||||||||||||||||| || Sbjct: 539 ctgctggggtatcctcaatggtccggccaccggcgcagccctcgccgagctcatcctgga 598 Query: 185 tgggcaggccaagatcgttgatcttgcgcccttcagcccggcaagatttctcaa 238 || || |||||||||||||||| | ||| |||||||||||||| |||||||| Sbjct: 599 cggcaagtccaagatcgttgatctcgagcctttcagcccggcaaggtttctcaa 652
>gb|AY105159.1| Zea mays PCO075778 mRNA sequence Length = 604 Score = 170 bits (86), Expect = 3e-39 Identities = 198/234 (84%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 5 gaggagggcgcagnaggtagtcgcggaacaggcctgctacctcccgtgcaccgatgacgg 64 ||||||||||| | |||| |||||||| ||||| |||||||| |||||||||| ||||| Sbjct: 414 gaggagggcgctg-aggtggtcgcggagcaggcgtgctacctgccgtgcaccgccgacgg 356 Query: 65 gctgccggtcattggggaaatgcccggggtgaagggatgctacgttgcaaccgggcacag 124 |||||||||||| ||||| || || || ||||| || ||||| || || || || ||||| Sbjct: 355 gctgccggtcatcggggagataccaggcgtgaaagggtgctatgtggccacgggccacag 296 Query: 125 ctgctgggggatcctcaatgctccagttaccggtgcagcactcgccgagctcatcctcga 184 ||||||||| |||||||||| ||| | ||||| ||||| ||||||||||||||||| || Sbjct: 295 ctgctggggtatcctcaatggtccggccaccggcgcagccctcgccgagctcatcctgga 236 Query: 185 tgggcaggccaagatcgttgatcttgcgcccttcagcccggcaagatttctcaa 238 || || |||||||||||||||| | ||| |||||||||||||| |||||||| Sbjct: 235 cggcaagtccaagatcgttgatctcgagcctttcagcccggcaaggtttctcaa 182
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 1e-16 Identities = 129/156 (82%) Strand = Plus / Minus Query: 27 gcggaacaggcctgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatg 86 ||||| ||||| |||||| | ||||||||| ||||||| ||||||| || || || ||| Sbjct: 23298209 gcggagcaggcttgctacatgccgtgcaccagtgacgggttgccggtgatcggagagatg 23298150 Query: 87 cccggggtgaagggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgct 146 || ||||||||||| |||||||| || ||||||||| || | ||||| |||||||| ||| Sbjct: 23298149 cctggggtgaagggttgctacgtcgccaccgggcacggcgggtggggaatcctcaacgct 23298090 Query: 147 ccagttaccggtgcagcactcgccgagctcatcctc 182 || | ||||| || || ||||| |||||||||||| Sbjct: 23298089 ccggccaccggcgctgcgctcgcggagctcatcctc 23298054
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 95.6 bits (48), Expect = 1e-16 Identities = 129/156 (82%) Strand = Plus / Minus Query: 27 gcggaacaggcctgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatg 86 ||||| ||||| |||||| | ||||||||| ||||||| ||||||| || || || ||| Sbjct: 23907 gcggagcaggcttgctacatgccgtgcaccagtgacgggttgccggtgatcggagagatg 23848 Query: 87 cccggggtgaagggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgct 146 || ||||||||||| |||||||| || ||||||||| || | ||||| |||||||| ||| Sbjct: 23847 cctggggtgaagggttgctacgtcgccaccgggcacggcgggtggggaatcctcaacgct 23788 Query: 147 ccagttaccggtgcagcactcgccgagctcatcctc 182 || | ||||| || || ||||| |||||||||||| Sbjct: 23787 ccggccaccggcgctgcgctcgcggagctcatcctc 23752
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 95.6 bits (48), Expect = 1e-16 Identities = 129/156 (82%) Strand = Plus / Minus Query: 27 gcggaacaggcctgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatg 86 ||||| ||||| |||||| | ||||||||| ||||||| ||||||| || || || ||| Sbjct: 84951 gcggagcaggcttgctacatgccgtgcaccagtgacgggttgccggtgatcggagagatg 84892 Query: 87 cccggggtgaagggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgct 146 || ||||||||||| |||||||| || ||||||||| || | ||||| |||||||| ||| Sbjct: 84891 cctggggtgaagggttgctacgtcgccaccgggcacggcgggtggggaatcctcaacgct 84832 Query: 147 ccagttaccggtgcagcactcgccgagctcatcctc 182 || | ||||| || || ||||| |||||||||||| Sbjct: 84831 ccggccaccggcgctgcgctcgcggagctcatcctc 84796
>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence Length = 230293 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 118 ggcacagctgctgggggatcctc 140 ||||||||||||||||||||||| Sbjct: 190398 ggcacagctgctgggggatcctc 190376
>gb|BC068332.1| Danio rerio zgc:85626, mRNA (cDNA clone MGC:85626 IMAGE:6525318), complete cds Length = 1888 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 1546 ataaataaaccttcaacact 1565
>ref|XM_656096.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3584.2), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactcgccgagctcatcctc 182 |||||||||||||||||||| Sbjct: 148 cactcgccgagctcatcctc 129
>gb|AC184077.2| Populus trichocarpa clone Pop1-53L15, complete sequence Length = 28233 Score = 40.1 bits (20), Expect = 6.8 Identities = 47/56 (83%) Strand = Plus / Plus Query: 78 ggggaaatgcccggggtgaagggatgctacgttgcaaccgggcacagctgctgggg 133 ||||| || |||||||||||||| || || ||||| || ||||||| ||| ||||| Sbjct: 16800 ggggagattcccggggtgaagggttgttatgttgccactgggcacaactgttgggg 16855
>gb|AC104096.5| Mus musculus BAC clone RP24-370O22 from chromosome 8, complete sequence Length = 160450 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tctgatgatgtgtgttctat 488 |||||||||||||||||||| Sbjct: 65317 tctgatgatgtgtgttctat 65336
>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24 Contains part of a novel gene similar to human DECR2 (peroxisomal 2,4-dienoyl CoA reductase 2), a novel gene similar to human KIAA0665, a novel gene similar to human KIAA0683, a novel gene similar to human KIAA0590, part of a novel gene and three CpG islands, complete sequence Length = 161218 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 153647 ataaataaaccttcaacact 153628
>emb|BX897741.9| Zebrafish DNA sequence from clone DKEY-273O13 in linkage group 5, complete sequence Length = 168673 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 atttctcaacaacaagaaga 249 |||||||||||||||||||| Sbjct: 22874 atttctcaacaacaagaaga 22893
>gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotease ANPC gene, complete cds Length = 4688 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactcgccgagctcatcctc 182 |||||||||||||||||||| Sbjct: 3908 cactcgccgagctcatcctc 3889
>ref|XM_681635.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2, peroxisomal, transcript variant 1 (LOC573514), mRNA Length = 1848 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 1564 ataaataaaccttcaacact 1583
>ref|XM_703423.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2, peroxisomal, transcript variant 2 (LOC573514), mRNA Length = 1796 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 1512 ataaataaaccttcaacact 1531
>ref|XM_681286.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2, peroxisomal, transcript variant 1 (LOC573411), mRNA Length = 1846 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 1562 ataaataaaccttcaacact 1581
>ref|XM_703300.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2, peroxisomal, transcript variant 2 (LOC573411), mRNA Length = 1794 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 1510 ataaataaaccttcaacact 1529
>ref|NM_213321.1| Danio rerio zgc:85626 (zgc:85626), mRNA Length = 1888 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 1546 ataaataaaccttcaacact 1565
>gb|AC158528.1| Mus musculus BAC clone RP23-259G7 from chromosome 8, complete sequence Length = 180194 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tctgatgatgtgtgttctat 488 |||||||||||||||||||| Sbjct: 136646 tctgatgatgtgtgttctat 136627
>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence Length = 158692 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 agatttctcaacaacaagaa 247 |||||||||||||||||||| Sbjct: 68714 agatttctcaacaacaagaa 68733
>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24, complete sequence Length = 176602 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 37716 ataaataaaccttcaacact 37735
>gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OABb-520P24, complete sequence Length = 142317 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 ggggacaccaaatcaaataatgta 371 |||||||| ||||||||||||||| Sbjct: 3496 ggggacacaaaatcaaataatgta 3519
>dbj|AP001189.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-672A2, complete sequence Length = 186389 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tctgatgatgtgtgttctat 488 |||||||||||||||||||| Sbjct: 44681 tctgatgatgtgtgttctat 44662
>emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 in linkage group 24, complete sequence Length = 188067 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ataaataaaccttcaacact 429 |||||||||||||||||||| Sbjct: 112372 ataaataaaccttcaacact 112391 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,616,171 Number of Sequences: 3902068 Number of extensions: 3616171 Number of successful extensions: 59473 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59383 Number of HSP's gapped (non-prelim): 90 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)