ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41p18 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex component| Exo70) (rExo70) Length = 653 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/85 (27%), Positives = 45/85 (52%) Frame = +3 Query: 414 GGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSLAVHIAWIMD 593 G +H +T + +L+ ++T ++ ++ +A S + + L+ +I ++ Sbjct: 415 GTVHELTSNAILFLQQLLDFQETAGAMLASQETSS--SATSYNSEFSKRLLSTYICKVLG 472 Query: 594 VLHKNLDTKSKIYRDPSLACIFLMN 668 L NL +KSK+Y DP+L+ IFL N Sbjct: 473 NLQLNLLSKSKVYEDPALSAIFLHN 497
>EXOC7_HUMAN (Q9UPT5) Exocyst complex component 7 (Exocyst complex component| Exo70) Length = 735 Score = 39.3 bits (90), Expect = 0.011 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = +3 Query: 414 GGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSLAVHIAWIMD 593 G +H +T + +L+ ++T ++ ++ +A S + L+ +I ++ Sbjct: 497 GTVHELTSNAILFLQQLLDFQETAGAMLASQETSS--SATSYSSEFSKRLLSTYICKVLG 554 Query: 594 VLHKNLDTKSKIYRDPSLACIFLMN 668 L NL +KSK+Y DP+L+ IFL N Sbjct: 555 NLQLNLLSKSKVYEDPALSAIFLHN 579
>EXOC7_MOUSE (O35250) Exocyst complex component 7 (Exocyst complex component| Exo70) Length = 697 Score = 37.7 bits (86), Expect = 0.031 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 12/97 (12%) Frame = +3 Query: 414 GGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSS---------- 563 G +H +T + +L+ ++T ++ + G +DP +SS Sbjct: 446 GTVHELTSNAILFLQQLLDFQETAGAMLASQV-LGDTYNIPLDPRETSSSATSYSSEFSK 504 Query: 564 --LAVHIAWIMDVLHKNLDTKSKIYRDPSLACIFLMN 668 L+ +I ++ L NL +KSK+Y DP+L+ IFL N Sbjct: 505 RLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHN 541
>G6PI_XANCP (Q8P9S7) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 504 Score = 35.4 bits (80), Expect = 0.16 Identities = 36/112 (32%), Positives = 52/112 (46%) Frame = +3 Query: 231 MYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGIFMELENLIRRDPARVATP 410 ++ A+R L D PV SD Y+ A + VR +G+ I+ +LE D V Sbjct: 91 LHTALRGDLTDA-PVASDAYATA-----AEVRQRVGALIQ----QLEGTDVTDIVSVGIG 140 Query: 411 GGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSL 566 G + P R V + LRA G+R + V D +A R A++DP R L Sbjct: 141 GSDLGP--RLVADALRAPSGARFRVHFVSNVDGAAMQRTLATLDPARTAGIL 190
>G6PI_XANC8 (Q4UTV8) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 504 Score = 35.4 bits (80), Expect = 0.16 Identities = 36/112 (32%), Positives = 52/112 (46%) Frame = +3 Query: 231 MYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGIFMELENLIRRDPARVATP 410 ++ A+R L D PV SD Y+ A + VR +G+ I+ +LE D V Sbjct: 91 LHTALRGDLTDA-PVASDAYATA-----AEVRQRVGALIQ----QLEGTDVTDIVSVGIG 140 Query: 411 GGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSL 566 G + P R V + LRA G+R + V D +A R A++DP R L Sbjct: 141 GSDLGP--RLVADALRAPSGARFRVHFVSNVDGAAMQRTLATLDPARTAGIL 190
>G6PI_XANCI (P0A0T1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 504 Score = 34.3 bits (77), Expect = 0.35 Identities = 36/112 (32%), Positives = 51/112 (45%) Frame = +3 Query: 231 MYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGIFMELENLIRRDPARVATP 410 ++ A+R L D PV S+ Y+ A VR +GS I+ +LE D V Sbjct: 91 LHTALRGDLTDA-PVASEAYATA-----EEVRQRMGSLIQ----QLEATDVTDIVSVGIG 140 Query: 411 GGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSL 566 G + P R V + LRA G+R + V D +A R A++DP R L Sbjct: 141 GSDLGP--RLVADALRAPSGARFRVHFVSNVDGAAMQRTLATLDPARTAGIL 190
>G6PI_XANAC (P0A0T0) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 504 Score = 34.3 bits (77), Expect = 0.35 Identities = 36/112 (32%), Positives = 51/112 (45%) Frame = +3 Query: 231 MYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGIFMELENLIRRDPARVATP 410 ++ A+R L D PV S+ Y+ A VR +GS I+ +LE D V Sbjct: 91 LHTALRGDLTDA-PVASEAYATA-----EEVRQRMGSLIQ----QLEATDVTDIVSVGIG 140 Query: 411 GGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSL 566 G + P R V + LRA G+R + V D +A R A++DP R L Sbjct: 141 GSDLGP--RLVADALRAPSGARFRVHFVSNVDGAAMQRTLATLDPARTAGIL 190
>G6PI_XANOR (Q5H0A7) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 504 Score = 32.3 bits (72), Expect = 1.3 Identities = 34/112 (30%), Positives = 51/112 (45%) Frame = +3 Query: 231 MYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGIFMELENLIRRDPARVATP 410 ++ A+R L D PV S+ Y+ A + VR +G+ I+ +LE D V Sbjct: 91 LHTALRGDLTDA-PVASEAYATA-----AEVRQRMGALIQ----QLEATDVTDIVSVGIG 140 Query: 411 GGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSL 566 G + P R V + LR G+R + V D +A R A++DP R L Sbjct: 141 GSDLGP--RLVADALRPVSGARLRVHFVSNVDGAAMQRTLATLDPARTAGIL 190
>G6PI_XANC5 (Q3BUL3) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 504 Score = 32.0 bits (71), Expect = 1.7 Identities = 34/112 (30%), Positives = 51/112 (45%) Frame = +3 Query: 231 MYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGIFMELENLIRRDPARVATP 410 ++ A+R L D PV S+ Y+ A + VR +G+ I+ +LE D V Sbjct: 91 LHTALRGDLTDA-PVASEAYATA-----AEVRQRMGALIQ----QLEATEVTDIVSVGIG 140 Query: 411 GGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSL 566 G + P R V + LR G+R + V D +A R A++DP R L Sbjct: 141 GSDLGP--RLVADALRPVSGARFRVHFVSNVDGAAMQRTLATLDPARTAGIL 190
>G6PI_XANOM (Q2P380) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 504 Score = 31.6 bits (70), Expect = 2.3 Identities = 34/112 (30%), Positives = 51/112 (45%) Frame = +3 Query: 231 MYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGIFMELENLIRRDPARVATP 410 ++ A+R L D PV S+ Y+ A + VR +G+ I+ +LE D V Sbjct: 91 LHTALRGDLTDA-PVASECYATA-----AEVRERMGALIQ----QLEATDVTDIVSVGIG 140 Query: 411 GGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRPTSSL 566 G + P R V + LR G+R + V D +A R A++DP R L Sbjct: 141 GSDLGP--RLVADALRPVSGARLRVHFVSNVDGAAMQRTLATLDPARTAGIL 190
>SYFA_SHEON (Q8EFA0) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 327 Score = 31.6 bits (70), Expect = 2.3 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +3 Query: 219 RVVDMYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLGSSIKGI-FMELENLIRRDPA 395 ++ DM + + + P+ P F + A +A ++ L I G+ ELE + + Sbjct: 37 KITDMMKMMGSLSPEEKPAFGQAVNDAKQA----IQQKLTERIDGLKSAELEAKLIAEKI 92 Query: 396 RVATPG-----GGIHPITRYV 443 V PG GG+HP+TR + Sbjct: 93 DVTLPGRTIEIGGLHPVTRTI 113
>IL12A_CERTO (P46661) Interleukin-12 alpha chain precursor (IL-12A) (Cytotoxic| lymphocyte maturation factor 35 kDa subunit) (CLMF p35) Length = 219 Score = 31.2 bits (69), Expect = 2.9 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 399 VATPGGGIHPITRYVMNYLRAACGSRQTLEEVME 500 VATPG + P + N L+AAC + Q +++E Sbjct: 27 VATPGPEMFPCLHHSQNLLKAACNTLQKARQILE 60
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 31.2 bits (69), Expect = 2.9 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -3 Query: 268 SRSGRMSRTASYMSTTRKRRSGERLEEEMASPNDMSCSA*VRTAA-IKARSPKGARPSKT 92 SRS SR +S +++RS + + S S R AA ++R+P S T Sbjct: 1859 SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKAARARSRTPSRRSRSHT 1918 Query: 91 RSHRRRSLGIRMRKT 47 S RRRS+ + R++ Sbjct: 1919 PSRRRRSISVGRRRS 1933
>ATU_DROME (Q94546) Another transcription unit protein| Length = 725 Score = 30.4 bits (67), Expect = 5.0 Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Frame = -3 Query: 286 GSENTGSRSG-RMSRTASYMSTTRKRRSGERLEEEM----ASPNDMSCSA*VRTAAIKAR 122 GS + SRSG R SR+ S + R RSG ++ + S SA R + AR Sbjct: 40 GSGSDRSRSGSRSSRSRSGSGSPRSARSGSAESRHSQLSGSARSKRSRSAHSRRSG-SAR 98 Query: 121 SPKGARPSKTRSHRRRSLGIRMRKTMLKAGXP 26 S K P +SHR SL R K+G P Sbjct: 99 SRKSGTPESPQSHRSGSLQSR------KSGSP 124
>RL2_THET8 (P60405) 50S ribosomal protein L2| Length = 275 Score = 30.4 bits (67), Expect = 5.0 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = +2 Query: 359 HGIGKSHPPRSCPGCHPWWWYTPHHSVRHELSPS 460 HG G+ PR P PW W T R PS Sbjct: 232 HGGGEGRAPRGRPPASPWGWQTKGLKTRKRRKPS 265
>YAT5_RHOBL (P05448) ATP synthase subunits region ORF 5| Length = 189 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +3 Query: 543 PDRPTSSLAVHIAWIMDVLHKNLDTKSKIYRDPSLACIFLMN 668 PD P + A++++W ++H DT+ KI R S CI L N Sbjct: 130 PDNPLGTHAMYLSWPAYIIHGTHDTR-KIGRRSSDGCIGLYN 170
>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)| Length = 1819 Score = 30.0 bits (66), Expect = 6.6 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +2 Query: 407 PWWWYTPHHSVRHELSPSRMRFTTDI 484 PWW TP SV EL P R T D+ Sbjct: 1355 PWWPNTPGDSVSEELGPGRSGDTEDL 1380
>MUTS2_HALMA (Q5UYI1) DNA mismatch repair protein mutS 2| Length = 947 Score = 30.0 bits (66), Expect = 6.6 Identities = 40/159 (25%), Positives = 71/159 (44%) Frame = +3 Query: 159 QLISFGDAISSSSRSPERLFRVVDMYEAVRDILPDLDPVFSDPYSAALRAEVSAVRNTLG 338 +LIS +++R L + + +RD L D D A L A++ A + L Sbjct: 378 RLISRVSRGRANARDLRSLAATLSVVPDIRDHLADAD--------ARLLADLHATLDPLA 429 Query: 339 SSIKGIFMELENLIRRDPARVATPGGGIHPITRYVMNYLRAACGSRQTLEEVMEGDLSAG 518 + + E+E IR DP + T GG I ++ LR+ + Q+ +E ++ +L A Sbjct: 430 ETRE----EIEAAIRPDPPQQVTEGGVIREGYDEELDRLRS---TEQSGKEWID-ELEAS 481 Query: 519 GRAAASVDPDRPTSSLAVHIAWIMDVLHKNLDTKSKIYR 635 R +D +VH + ++V + NLD + Y+ Sbjct: 482 ERERTGID-SLKVGHTSVH-GYYIEVTNANLDAVPEDYQ 518
>VIF_SIVG1 (Q02841) Virion infectivity factor (Vif) (SOR protein) (Q protein)| Length = 219 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -3 Query: 277 NTGSRSGRMSRTASYMSTTRKRRSGERLEEEMASPN 170 N GSR G M R A+ + KRRS + L E A+P+ Sbjct: 173 NLGSRQGAMGRMATRHAQGSKRRSQKALWNEHANPS 208
>SCN1_SCHPO (P41890) Cut9-interacting protein scn1| Length = 335 Score = 30.0 bits (66), Expect = 6.6 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 344 NQRYIHGIGKSHPPRSCP--GCHPWWWYTPHHSVRHELSPSRMR 469 +Q+Y+ + K +P + P G HPW+ Y + + +L S R Sbjct: 38 DQKYVEQLAKEYPGKVIPSFGIHPWFSYYLYDDLDKDLQSSETR 81
>FBLN1_BRARE (O42182) Fibulin-1 precursor| Length = 681 Score = 30.0 bits (66), Expect = 6.6 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 336 RGCCARQRPLHGVQQSKG 283 R CC ++P HGVQ SKG Sbjct: 136 RSCCVDKQPAHGVQPSKG 153
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 29.6 bits (65), Expect = 8.6 Identities = 28/114 (24%), Positives = 44/114 (38%) Frame = -3 Query: 418 PPPGVATRAGSRRMRFSNSMNIPLIEEPRVLXXXXXXXXXXXX*GSENTGSRSGRMSRTA 239 PP +R G R+ +S PR S + SRS SRT Sbjct: 95 PPDSHHSRRGPPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTR 154 Query: 238 SYMSTTRKRRSGERLEEEMASPNDMSCSA*VRTAAIKARSPKGARPSKTRSHRR 77 S +T K RS R + + +S + + R+ + ++ P R S +RS + Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRS-RSPPPTSKRESNSRSRSK 207
>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) Length = 1706 Score = 29.6 bits (65), Expect = 8.6 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 145 RTAAIKARSPKGARPSKTRSHRRRSLGIRMRKTMLKA 35 R +A RS +R K +SH ++ GIR T LKA Sbjct: 155 RASARSKRSSPKSRRGKKKSHENKNKGIRTHPTQLKA 191
>GYRB_CAMJE (O87667) DNA gyrase subunit B (EC 5.99.1.3)| Length = 769 Score = 29.6 bits (65), Expect = 8.6 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Frame = +3 Query: 399 VATPGGGIHP------ITRYVMNYLRAACGSRQTLEEVMEGDLSAGGRAAASVDPDRP 554 + TP GG H +TR + NY+ A +R+ ++ D+ G A SV P Sbjct: 269 IKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEP 326
>GRDB_CLOLI (P52217) Glycine reductase complex component B gamma subunit (EC| 1.21.4.2) (Selenoprotein PB gamma) Length = 436 Score = 29.6 bits (65), Expect = 8.6 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Frame = +3 Query: 237 EAVRDILPDL---DPVFS-DPYSAALRAEVSAVRNTLG-SSIKGIFMELENLIRRDPARV 401 E V+ PDL P F+ Y A A AV++TLG ++ G+++E Sbjct: 74 EMVKGASPDLFIAGPAFNAGRYGVAAGAITKAVQDTLGIPAVTGMYIE------------ 121 Query: 402 ATPGGGIHPITRYVMNYLRAACGSRQTL 485 PG ++ + YVM+ +A G R++L Sbjct: 122 -NPGADMYKKSVYVMSTADSAAGMRKSL 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,898,722 Number of Sequences: 219361 Number of extensions: 2034550 Number of successful extensions: 6179 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5943 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6178 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
