ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41n18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 870 bits (439), Expect = 0.0 Identities = 613/671 (91%), Gaps = 5/671 (0%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 33381 ctataatttttgatggtttcgcgttgttatcttgtcatctttggatgttttatgtacctt 33322 Query: 61 --atacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgttttttc 118 ||| | |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 33321 ttatatctttcttgggactaacttattaattcagtgccaagtgccagttcctgttttttc 33262 Query: 119 tatgtttttggctcttttcatatctgattttg-aacggagttcaaacgaaataaaatccc 177 | |||||||| ||||||||| ||||||||||| |||||||| |||||| ||||||| || Sbjct: 33261 tgtgtttttgactcttttcagatctgattttggaacggagtccaaacggaataaaaatcc 33202 Query: 178 cgaaatgattttttcccgaacggaagaagatcagggggcctgtgggccaagccaggaggg 237 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| Sbjct: 33201 cgaaatgattttttcccgaacggaagaagatcagggggcctctgg-ccaagccaggtggg 33143 Query: 238 ctacagggagcccacgagctcccactccgccaccaggggggaggcggcagtgggcaggct 297 || |||||||||||| ||||||||| ||||||||||||||||||||| ||| |||| Sbjct: 33142 ctccagggagcccacaagctcccaccacgccaccaggggggaggcggcggtgtcagggct 33083 Query: 298 tgtggcctccctggc-gccccctgacctagatcttgcgcctatatattccctaaaaatca 356 |||||||||| |||| ||||||||||||||||| | |||||||||||||| || | ||| Sbjct: 33082 tgtggcctccttggccgccccctgacctagatccttggcctatatattcccaaatattca 33023 Query: 357 gnnnnnnnntcaagggagccacgaaaatacttttccgccgccgcaagcttccgtttccac 416 | ||| ||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 33022 gcaaaaaaatcaggggggcctcgaaaatacttttccgccgccgcaagcttccgtttcccc 32963 Query: 417 gagatctcatctggagacccttcccggcgccctgctggaggggactttggagttggaggg 476 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 32962 gagatctcatctggagacccttcccggcgccctgccggaggggactttggagttggaggg 32903 Query: 477 cttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacg 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32902 cttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacg 32843 Query: 537 ggtccgtagttagtagctagatggcttcttctctctcttggatcttcaatacaaagttct 596 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32842 ggtccatagttagtagctagatggcttcttctctctcttggatcttcaatacaaagttct 32783 Query: 597 ccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttgtcgagat 656 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 32782 ccatgatcttcatggagatctatccgatgtaatcttctttggcggtgtgtttgtcgagat 32723 Query: 657 ccgatgaattg 667 ||||||||||| Sbjct: 32722 ccgatgaattg 32712 Score = 440 bits (222), Expect = e-120 Identities = 243/250 (97%) Strand = Plus / Minus Query: 370 gggagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctg 429 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 27820 gggagcctcgaaaatacttttccgccgccgcaagcttccgtttccgcgagatctcatgtg 27761 Query: 430 gagacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatc 489 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 27760 gatacccttcccggcgccctgccggaggggactttggagttggagggcttcttcatcatc 27701 Query: 490 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttag 549 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 27700 atcatcgccactccaatgactcgtgagtagttcacttcagacctacgggtccatagttag 27641 Query: 550 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27640 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 27581 Query: 610 ggagatctat 619 |||||||||| Sbjct: 27580 ggagatctat 27571 Score = 339 bits (171), Expect = 7e-90 Identities = 308/351 (87%), Gaps = 5/351 (1%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 28192 ctataatttttgatggtttcaccctgttatcttgtcatctttggatgttatatgtacctt 28133 Query: 61 --atacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgttttttc 118 ||| | |||||||||||||||||||| |||||||||||||||| ||||| | Sbjct: 28132 ttatatcttttttgggactaacttattaattcagtgccaagtgccagttcctattttt-c 28074 Query: 119 tatgtttttggctcttttcatatctgattttg-aacggagttcaaacgaaataaaatccc 177 | |||||||| ||||||||| ||||||||||| |||||||| |||||| ||||||| ||| Sbjct: 28073 tgtgtttttgactcttttcagatctgattttggaacggagtccaaacggaataaaaaccc 28014 Query: 178 cgaaatgattttttcccgaacggaagaagatcagggggcctgtgggccaagccaggaggg 237 |||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||| Sbjct: 28013 cgaaatgatttttttccgaacggaagaagatcagggggcctctgggccaagcgaggtggg 27954 Query: 238 ctacagggagcccacgagctcccactccgccaccaggggggaggcggcagtgggcaggct 297 || || ||||||||| ||||||||| ||||||||||||||||||||| ||| |||| Sbjct: 27953 ctccaaggagcccacaagctcccaccacgccaccaggggggaggcggcggtgtcagggct 27894 Query: 298 tgtggcctccctgg-cgccccctgacctagatcttgcgcctatatattccc 347 |||||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct: 27893 tgtggcctccctggccgccccctgacctagatccttggcctatatattccc 27843 Score = 299 bits (151), Expect = 6e-78 Identities = 181/191 (94%) Strand = Plus / Plus Query: 376 cacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagacc 435 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 14776 cacgaaaacacttttccgccgccgcaagcttccgtttccgcgagatctcatctggagacc 14835 Query: 436 cttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcatc 495 |||||||| ||||||| |||||||||||||||||| |||||||||||||||| || |||| Sbjct: 14836 cttcccggtgccctgccggaggggactttggagttcgagggcttcttcatcaacaccatc 14895 Query: 496 gcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagcta 555 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 14896 tcccctccaatgactcgtgagtacttcacttcagacctacgggtccgtacttagtagcta 14955 Query: 556 gatggcttctt 566 ||||||||||| Sbjct: 14956 gatggcttctt 14966 Score = 170 bits (86), Expect = 4e-39 Identities = 101/106 (95%) Strand = Plus / Plus Query: 562 ttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggagatctatcc 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16797 ttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggagatctatcc 16856 Query: 622 gatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||| ||||||||||| ||||| ||||||| ||||||||| Sbjct: 16857 gatgtaatcctctttggcggtgtgtttctcgagatttgatgaattg 16902 Score = 145 bits (73), Expect = 2e-31 Identities = 156/181 (86%), Gaps = 2/181 (1%) Strand = Plus / Plus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||| |||| Sbjct: 14472 gactaacttattaactcagtgccaagtgtcagttcttgttttttctatgtttttgactct 14531 Query: 134 tttcatatctgatttt-gaacggagttcaaacgaaataaaatccccgaaatga-tttttt 191 || || |||||||||| ||| ||||| |||||| |||||||||||| |||| | |||||| Sbjct: 14532 ttccagatctgattttggaatggagtccaaacggaataaaatccccaaaataattttttt 14591 Query: 192 cccgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagccca 251 || ||||||||||||||| || ||| || ||| ||||| || || | |||||||||||| Sbjct: 14592 ccagaacggaagaagatcgggaggcttgagggtcaagcaagtgggcccacagggagccca 14651 Query: 252 c 252 | Sbjct: 14652 c 14652 Score = 91.7 bits (46), Expect = 3e-15 Identities = 52/54 (96%) Strand = Plus / Minus Query: 614 atctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 20145 atctatccaatgtaatcttctttggcggtgtgtttgtcgagatccgatgaattg 20092 Score = 77.8 bits (39), Expect = 4e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgtttt 51 |||||||||||||| |||||| ||||||||||||||| ||||||||||||| Sbjct: 14397 ctataatttttgatagtttcacgatgttatcttgtcaactttggatgtttt 14447
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 527 bits (266), Expect = e-146 Identities = 290/298 (97%) Strand = Plus / Minus Query: 370 gggagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctg 429 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 257562 gggagcctcgaaaatacttttccgccgccgcaagcttccgtttccgcgagatctcatctg 257503 Query: 430 gagacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatc 489 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 257502 gagacccttcccggcgccctgccggaggggactttggaggtggagggcttcttcatcatc 257443 Query: 490 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttag 549 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 257442 atcatcgcccctccaatgactcgtgactagttcacttcagacctacgggtccgtagttag 257383 Query: 550 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257382 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 257323 Query: 610 ggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 257322 ggagatcaatctgatgtaatcttctttggcggtgtgtttgtcgagatccgatgaattg 257265 Score = 527 bits (266), Expect = e-146 Identities = 290/298 (97%) Strand = Plus / Minus Query: 370 gggagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctg 429 ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 242436 gggagcctcgaaaatacttttccaccgccgcaagcttccgtttccgcgagatctcatctg 242377 Query: 430 gagacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatc 489 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 242376 gagacccttcccggcgccctgccggaggggactttggaggtggagggcttcttcatcatc 242317 Query: 490 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttag 549 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 242316 atcatcgcccctccaatgactcgtgactagttcacttcagacctacgggtccgtagttag 242257 Query: 550 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242256 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 242197 Query: 610 ggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 242196 ggagatctatccgatgtaatcttctttggtggtgtgtttgtcgagatccgatgaattg 242139 Score = 238 bits (120), Expect = 2e-59 Identities = 241/276 (87%), Gaps = 4/276 (1%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| Sbjct: 257857 gactaacttattgattcagtgccaagtgccagttcctgtttttccg-tgtttttgactct 257799 Query: 134 tttcatatctgattttg-aacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| ||||||||||| |||||||| |||||| || |||| |||||||||||||||||| Sbjct: 257798 tttcagatctgattttggaacggagtccaaacggaagaaaaaccccgaaatgattttttc 257739 Query: 193 ccgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagcccac 252 |||||||||||||| || || | || ||||||| |||||| |||| |||||||||||| Sbjct: 257738 ccgaacggaagaagtccatggagactttgggccaggccaggtgggccccagggagcccac 257679 Query: 253 gagctcccactccgccaccaggggggaggcggcagtgggcaggcttgtggcctccctgg- 311 || | ||||||||||||| |||||||||||| ||||||| | ||||||| ||||||| Sbjct: 257678 aagggctcactccgccacca-gggggaggcggcggtgggcaagtttgtggcttccctggc 257620 Query: 312 cgccccctgacctagatcttgcgcctatatattccc 347 |||| |||||||||| | |||||||||||||||||| Sbjct: 257619 cgcctcctgacctaggttttgcgcctatatattccc 257584 Score = 145 bits (73), Expect = 2e-31 Identities = 209/252 (82%), Gaps = 6/252 (2%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacc-- 58 ||||| ||||||||||||||| | |||||||||||| |||||| |||||||||||||| Sbjct: 251423 ctatattttttgatggtttcacgctgttatcttgtcttctttgtatgttttatgtacctt 251364 Query: 59 -ttatacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgtttttt 117 ||||| | |||||||||||| |||||| ||||||| ||||||||| ||||| Sbjct: 251363 tttatatctttttggggactaacttattgattcagagccaagtgtcagttcctg-ttttt 251305 Query: 118 ctatgtttttggctcttttcatatctgatttt-gaacggagttcaaacgaaataaaatcc 176 | |||||||| ||||||||| |||||||||| ||||||||| |||||| || |||| || Sbjct: 251304 ccgtgtttttgactcttttcagatctgattttggaacggagtccaaacggaagaaaaacc 251245 Query: 177 ccgaaatgattttttcccgaacggaagaagatcagggggcctgtgggccaagccaggagg 236 | ||||||||||||| |||||||||||||| ||||| | || |||| || |||||| || Sbjct: 251244 cggaaatgatttttt-ccgaacggaagaagtccagggagactttgggtcaggccaggtgg 251186 Query: 237 gctacagggagc 248 || |||||||| Sbjct: 251185 gccccagggagc 251174 Score = 93.7 bits (47), Expect = 7e-16 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 258 cccactccgccaccaggggggaggcggcagtgggcaggcttgtggcctccctggc-gccc 316 |||||||||||||||||||| || |||| ||||||| ||||||||| |||||||| ||| Sbjct: 242547 cccactccgccaccagggggaag-cggcggtgggcaagcttgtggcttccctggccgcct 242489 Query: 317 cctgacctagatcttgcgcctatatattccc 347 |||||||||| | |||||||||||||||||| Sbjct: 242488 cctgacctaggttttgcgcctatatattccc 242458 Score = 75.8 bits (38), Expect = 2e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacc 58 ||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||| Sbjct: 257933 ctataatttttgatggtttcacgctgttatcttgttttctttgtatgttttatgtacc 257876
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 511 bits (258), Expect = e-142 Identities = 288/298 (96%) Strand = Plus / Plus Query: 370 gggagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctg 429 ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 24980 gggagcctcgaaaatacttttccgctgccgcaagcttccgtttccgcgagatctcatctg 25039 Query: 430 gagacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatc 489 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 25040 gagacccttcccggcgccctaccggaggggactttggagttggagggcttcttcatcatc 25099 Query: 490 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttag 549 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 25100 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggttcgtagttag 25159 Query: 550 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25160 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 25219 Query: 610 ggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||| |||||| ||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 25220 ggagttctatctgatgtaatcttctttggcggtgtgtttgtcgagatccaatgaattg 25277 Score = 504 bits (254), Expect = e-139 Identities = 287/298 (96%) Strand = Plus / Plus Query: 370 gggagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctg 429 ||||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||| Sbjct: 18387 gggagcctcgaaaatactttttcgccgccgcaagcttccgtttccgcaagatctcatctg 18446 Query: 430 gagacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatc 489 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 18447 gagacccttcccggcgccctaccggaggggactttggagttggagggcttcttcatcatc 18506 Query: 490 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttag 549 |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| Sbjct: 18507 atcatcgcccctccaatgactcatgaggagttcacttcagacctacgggtctgtagttag 18566 Query: 550 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 609 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18567 tagctagttggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 18626 Query: 610 ggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 18627 ggagatctatccgatgtaatcttctttggcggtgtgtttgtcgagatccgatgaattg 18684 Score = 301 bits (152), Expect = 2e-78 Identities = 305/352 (86%), Gaps = 6/352 (1%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||| | |||||||||| ||||||| ||||||||||||||| Sbjct: 18015 ctataatttttgatggtttcacactattatcttgtcttctttggttgttttatgtacctt 18074 Query: 61 --atacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgttttttc 118 ||| | ||||||||| |||||||||| |||||||||||||||| ||||||| Sbjct: 18075 ttatatcttttttgggactaacttcttaattcagtgccaagtgccagttcctcttttttc 18134 Query: 119 tatgtttttggctcttttcatatctgattttg-aacggagttcaaacgaaataaaatccc 177 |||||||| ||||||||| ||||||||||| |||||||| |||||| || |||| ||| Sbjct: 18135 cgtgtttttgactcttttcagatctgattttggaacggagtccaaacggaagaaaaaccc 18194 Query: 178 cgaaatgatttttt-cccgaacggaagaagatcagggggcctgtgggccaagccaggagg 236 |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 18195 cgaaatgatttttttcccgaacggaagaagatcagggggcctttgggccaagccaggtgg 18254 Query: 237 gctacagggagcccacgagctcccactccgccaccaggggggaggcggcagtgggcaggc 296 ||| || ||||||||| ||| ||||||||||||| | ||||||||| || |||| ||| Sbjct: 18255 gctccatggagcccacaagcccccactccgccacta-gggggaggcagcggtggcagggc 18313 Query: 297 ttgtggcctccctgg-cgccccctgacctagatcttgcgcctatatattccc 347 ||||||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct: 18314 ttgtggcctccctggccgccccctgacctagatccttggcctatatattccc 18365 Score = 297 bits (150), Expect = 2e-77 Identities = 305/352 (86%), Gaps = 9/352 (2%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||| ||||||||| | |||||||||||| ||||||| ||||||||||||||| Sbjct: 24611 ctataattttttatggtttcacgctgttatcttgtcttctttggttgttttatgtacctt 24670 Query: 61 --atacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgttttttc 118 ||| | |||||||||||||||| ||| |||||||||| ||||| ||||| Sbjct: 24671 ttatatcttttttgggactaacttattaattgagtgccaagtgccaattcct---ttttc 24727 Query: 119 tatgtttttggctcttttcatatctgattttg-aacggagttcaaacgaaataaaatccc 177 |||||||| ||||||||| ||||||||||| |||||||| |||||| || |||| ||| Sbjct: 24728 cgtgtttttgactcttttcagatctgattttggaacggagtccaaacggaagaaaaaccc 24787 Query: 178 cgaaatgattttttcccgaacggaagaagatcagggggcctgtgggccaagccagg-agg 236 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 24788 cgaaatgattttttcccgaacggaagaagatcagggggcctttgggccaagccaggtggg 24847 Query: 237 gctacagggagcccacgagctcccactccgccaccaggggggaggcggcagtgggcaggc 296 ||| |||||||||||| ||| ||||||||||||||| ||||||||| || |||| ||| Sbjct: 24848 gctccagggagcccacaagcccccactccgccacca-gggggaggcagcggtggcagggc 24906 Query: 297 ttgtggcctccctgg-cgccccctgacctagatcttgcgcctatatattccc 347 ||||||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct: 24907 ttgtggcctccctggccgccccctgacctagatccttggcctatatattccc 24958 Score = 216 bits (109), Expect = 7e-53 Identities = 176/197 (89%), Gaps = 1/197 (0%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||||||||| || ||| || ||| |||| |||||||||||||| ||| Sbjct: 2402 ggagggcttcttcatcaacaccatgacctctctgatgatgcgtgagtagttcaccataga 2461 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctctcttggatcttcaatacaa 590 ||| ||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 2462 ccttcgggtccatagctagtagctagatggcttgttctctctcttggatcttaaatacaa 2521 Query: 591 agttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttgt 650 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct: 2522 agttctccatgatcttcatggagatctatccgatgtaatcttcttt-gcggtgtgtttgt 2580 Query: 651 cgagatccgatgaattg 667 ||||||| |||||||| Sbjct: 2581 tgagatccaatgaattg 2597 Score = 75.8 bits (38), Expect = 2e-10 Identities = 105/126 (83%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||| | ||| |||||||||||||||||||||||| |||||||| | || Sbjct: 2007 gactaacttattaacttagtgccaagtgccagttcctgttttttccgtgtttttgaccct 2066 Query: 134 tttcata-tctgattttgaacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| | |||||| |||||||| |||||| ||||||| | ||||| |||||||| Sbjct: 2067 tttcagaggaggattttaaacggagtccaaacgtaataaaacttctgaaattattttttc 2126 Query: 193 ccgaac 198 | |||| Sbjct: 2127 cggaac 2132 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggc 130 ||||||| |||||| ||||| ||||||||||||| |||||||||| |||||||||| Sbjct: 30408 gactaacctattaactcagtgccaagtgccagtttctgttttttccgtgtttttggc 30464 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 ||||||||||| |||||| |||| | ||||||||| | ||||||||||||||| Sbjct: 30322 ctataatttttcatggttccatgctattatcttgttaactttggatgttttat 30374 Score = 56.0 bits (28), Expect = 2e-04 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtc-atctttggatgtttt 51 ||||||||||| ||||||||||| | |||||||||| | ||||||||||||| Sbjct: 1932 ctataattttttatggtttcatgctattatcttgtcaaactttggatgtttt 1983 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 377 acgaaaatacttttccgccgccgcaagcttc 407 |||||||||||| |||||||||||||||||| Sbjct: 2308 acgaaaatacttatccgccgccgcaagcttc 2338 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 247 gcccacgagctcccactccgccaccaggg 275 |||||| ||| |||||||||||||||||| Sbjct: 36672 gcccacaagcccccactccgccaccaggg 36644 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 242 agggagcccacgagctcccactccgccaccag 273 |||| |||||| ||| |||||||||||||||| Sbjct: 42586 agggggcccacaagcccccactccgccaccag 42555
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 504 bits (254), Expect = e-139 Identities = 287/298 (96%) Strand = Plus / Plus Query: 370 gggagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctg 429 ||||||| |||||||||||||||||||| ||||| |||||| | | |||||||||||||| Sbjct: 84099 gggagcctcgaaaatacttttccgccgctgcaagtttccgtgttcgcgagatctcatctg 84158 Query: 430 gagacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatc 489 ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 84159 gagacccttcccggcaccctgccagaggggactttggagttggagggcttcttcatcatc 84218 Query: 490 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttag 549 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84219 atcatcacccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttag 84278 Query: 550 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84279 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 84338 Query: 610 ggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 84339 ggagatctatccgatgtaatcttctttggcggtgtgtttgtcgagatccgatgaattg 84396 Score = 480 bits (242), Expect = e-132 Identities = 279/290 (96%), Gaps = 1/290 (0%) Strand = Plus / Plus Query: 378 cgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagaccct 437 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct: 77545 cgaaaatacttttccgccgccgcaagcttccgttttcgcgagatctcatctggagaccct 77604 Query: 438 tcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcatcgc 497 |||||| ||| || | ||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 77605 -cccggcacccagccgaaggggactttggagttggagggcttcttcatcatcataatcac 77663 Query: 498 ccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagctaga 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77664 ccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagctaga 77723 Query: 558 tggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggagatct 617 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 77724 tggcttcttctctctcttggatcttcaatacaaagttcttcatgatcttcatggagatct 77783 Query: 618 atccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 77784 atccgatgtaatcttctttggcggtgtgtttgtcgagatccgatgaattg 77833 Score = 299 bits (151), Expect = 6e-78 Identities = 247/275 (89%), Gaps = 3/275 (1%) Strand = Plus / Plus Query: 75 actaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctctt 134 ||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||| Sbjct: 83804 actaacttattaattcagtgccaagtgtcagttcctgttttttccgtgtttttgactctt 83863 Query: 135 ttcatatctgattttg-aacggagttcaaacgaaataaaatccccgaaatgattttttcc 193 |||| ||||||||||| |||||||| |||||| || |||| ||||||||||||||||||| Sbjct: 83864 ttcagatctgattttggaacggagtccaaacggaagaaaaaccccgaaatgattttttcc 83923 Query: 194 cgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagcccacg 253 ||||||||||||| || ||||| | |||||||||||||| ||||| |||||||||| | Sbjct: 83924 cgaacggaagaagtccacggggcttttgggccaagccaggtgggctccagggagccctca 83983 Query: 254 agctcccactccgccaccaggggggaggcggcagtgggcaggcttgtggcctccctgg-c 312 ||| ||||| ||||||||| |||||||||||| |||||||||||||||| |||||||| | Sbjct: 83984 agcccccacaccgccacca-gggggaggcggcggtgggcaggcttgtggactccctggcc 84042 Query: 313 gccccctgacctagatcttgcgcctatatattccc 347 |||||||||||||| |||||| ||||||||||||| Sbjct: 84043 gccccctgacctaggtcttgcacctatatattccc 84077 Score = 274 bits (138), Expect = 3e-70 Identities = 247/277 (89%), Gaps = 6/277 (2%) Strand = Plus / Plus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||| Sbjct: 77242 gactaacttattaattcagtgccaagtgccagttcctgtttttccg-tgtttttaactct 77300 Query: 134 tttcatatctgattttg-aacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| || |||||||| |||||||| |||| | || |||| ||||||||||||||||| Sbjct: 77301 tttcagatatgattttggaacggagtccaaatggaagaaaaaccccgaaatgattttttt 77360 Query: 193 cc-gaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagccca 251 || |||||||||||| || ||||| | |||||||||||||| ||||| ||||||||||| Sbjct: 77361 cctgaacggaagaagtccaaggggcttttgggccaagccaggtgggctccagggagccca 77420 Query: 252 cgagctcccactccgccaccaggggggaggcggcagtgggcaggcttgtggcctccctgg 311 | ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 77421 caagcccccactccgccacca--ggggaggcggcggtgggcaggcttgtggcctccctgg 77478 Query: 312 -cgccccctgacctagatcttgcgcctatatattccc 347 ||||||||||||||| |||||||||||||||||||| Sbjct: 77479 ccgccccctgacctaggtcttgcgcctatatattccc 77515 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 4 taatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 |||||||||||||||||| |||||||||||| | |||| | |||||||||||||||| Sbjct: 83731 taatttttgatggtttcacgatgttatcttgccttcttcgtatgttttatgtacctt 83787 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||| | |||||||||| | |||| | |||||||||||||||| Sbjct: 77167 ctataatttttgatggtttcacgctgttatcttgccctcttcgtatgttttatgtacctt 77226
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence Length = 77136 Score = 498 bits (251), Expect = e-137 Identities = 288/299 (96%), Gaps = 1/299 (0%) Strand = Plus / Minus Query: 370 gggagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctg 429 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 19937 gggagcctcgaaaatacttttccgccgccgcaagcttccgtttccgcgagatctcatctg 19878 Query: 430 gagacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatc 489 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 19877 gagacccttccaggcgccctgccggaggggactttggagttggagggcttcttcatcatc 19818 Query: 490 atcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgt-agtta 548 || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 19817 atgatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtctgtaagtta 19758 Query: 549 gtagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttca 608 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 19757 gtagctagatggcttcttctctctcttggatcttcaatacaaagttctccattatcttca 19698 Query: 609 tggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 19697 tggagatctatctaatgtaatcttctttggcggtgtgtttgtcgagatccgatgaattg 19639 Score = 270 bits (136), Expect = 5e-69 Identities = 243/276 (88%), Gaps = 2/276 (0%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||| Sbjct: 20234 gactaacttattaattcagtgccaagtgccagttcctattttttccgtgtttttgactct 20175 Query: 134 tttcatatctgattttg-aacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| ||||||||||| |||||| | |||| | || |||| |||||||||||||||||| Sbjct: 20174 tttcagatctgattttggaacggattccaaatggaagaaaaaccccgaaatgattttttc 20115 Query: 193 ccgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagcccac 252 ||||||| ||||| |||||||| | |||||||||||||| ||||| |||||||||||| Sbjct: 20114 tcgaacgggagaagtccagggggcttttgggccaagccaggtgggctccagggagcccac 20055 Query: 253 gagctcccactccgccaccaggggggaggcggcagtgggcaggcttgtggcctccctgg- 311 ||| |||||| |||||||| |||||||||||| ||||||||||||||||||| ||||| Sbjct: 20054 aagcccccactacgccaccacgggggaggcggcggtgggcaggcttgtggcctacctggt 19995 Query: 312 cgccccctgacctagatcttgcgcctatatattccc 347 ||||||||||| ||| |||| ||||||| |||||| Sbjct: 19994 cgccccctgacttaggtctttggcctataaattccc 19959 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||| | | |||||||||| | |||||| |||||||||||||||| Sbjct: 20309 ctataatttttgatggtttgacgctgttatcttgccttctttgtatgttttatgtacctt 20250
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 472 bits (238), Expect = e-130 Identities = 277/290 (95%) Strand = Plus / Plus Query: 378 cgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagaccct 437 ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 12512 cgaaaatactttttcgccgccgcaagcttccgtttccgcgagatctcatctagagaccct 12571 Query: 438 tcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcatcgc 497 |||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| || ||| Sbjct: 12572 tcccggtgccttgccggaggggactttggagttgtagggcttcttcatcatcaccaccgc 12631 Query: 498 ccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagctaga 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 12632 ccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtatctaga 12691 Query: 558 tggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggagatct 617 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 12692 tggcttcttctctctcttggatcttcaatacaaagttctacatgatcttcatggagatct 12751 Query: 618 atccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 12752 atccaatgtaatcttctttggcggtgtgtttgtcgagatccgatgaattg 12801 Score = 468 bits (236), Expect = e-128 Identities = 278/292 (95%) Strand = Plus / Minus Query: 375 ccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagac 434 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 30508 ccacgaaaacacttttccgccgccgcaagcttccgtttccgcgagatctcatctggagac 30449 Query: 435 ccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcat 494 ||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct: 30448 ccttcccggtgccctgccggaggggactttggatttggagggcttctacatcaacatcat 30389 Query: 495 cgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagct 554 |||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| Sbjct: 30388 cgcctctccaatgactcgtgagtagtccacttcagacctatgggttcgtagttagtagct 30329 Query: 555 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 614 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 30328 agatggcttcttctctctcttggatcttcaatgcaaagttctccatgatcttcatggaga 30269 Query: 615 tctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaatt 666 |||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 30268 tctatccgatgtaatcctctttggcggtgtgtttgtcgagatccgatgaatt 30217 Score = 462 bits (233), Expect = e-127 Identities = 278/293 (94%) Strand = Plus / Minus Query: 375 ccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagac 434 ||||||||| ||||||||||| | ||||||||| |||||| ||||||||||||||||||| Sbjct: 15014 ccacgaaaacacttttccgccacagcaagcttctgtttccgcgagatctcatctggagac 14955 Query: 435 ccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcat 494 ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 14954 ccttcccggtgccctgccggaggggactttggagttggagggcttctacatcaacatcat 14895 Query: 495 cgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagct 554 |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| || Sbjct: 14894 cgcctctccaatgactcgtgagtagtccacttcagacctatgggtccgtagttagtaact 14835 Query: 555 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14834 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 14775 Query: 615 tctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 14774 tctatccgatgtaatcctctttggcggtgtgtttgtcgagatccgatgaattg 14722 Score = 430 bits (217), Expect = e-117 Identities = 274/293 (93%) Strand = Plus / Plus Query: 375 ccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagac 434 ||||||||| ||||||| || ||| ||||||||||||||| ||||||||||||||||||| Sbjct: 85771 ccacgaaaacacttttctgcagccacaagcttccgtttccgcgagatctcatctggagac 85830 Query: 435 ccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcat 494 || |||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 85831 ccatcccggtgccctgccggaggggactttggagttggagggcttctacatcaacatcat 85890 Query: 495 cgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagct 554 |||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| Sbjct: 85891 cgcctctccaatgactcgtgagtagtccacttcagacctatgggtccgtagttggtagct 85950 Query: 555 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 614 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 85951 agatggcttcttctctctcttggatcttcaatacaaagttttccatgatcttcatggaga 86010 Query: 615 tctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||||||||||| ||||||||||| |||||||||| |||| |||||||| Sbjct: 86011 tctatccgatgtaatcctctttggcggtgtgtttgtcgatatccaatgaattg 86063 Score = 398 bits (201), Expect = e-108 Identities = 270/293 (92%) Strand = Plus / Plus Query: 375 ccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagac 434 ||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||| Sbjct: 92480 ccacgaaaacacttttccgccaccgcaagcttccgtttccgccagatctcatctggagac 92539 Query: 435 ccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcat 494 || || ||| ||| | |||||||||||| |||||||| ||||||| |||| |||||| Sbjct: 92540 ccatctcggtgccgtttcggaggggacttttgagttggacggcttctaaatcaacatcat 92599 Query: 495 cgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagct 554 || | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 92600 cggctctccaatgactcgtgagtagtccacttcagacctacgggtccgtagttggtagct 92659 Query: 555 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92660 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 92719 Query: 615 tctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||||||||||| ||||||| ||| |||||||||||||||||||||||| Sbjct: 92720 tctatccgatgtaatcctctttggaggtgtgtttgtcgagatccgatgaattg 92772 Score = 293 bits (148), Expect = 4e-76 Identities = 257/292 (88%), Gaps = 1/292 (0%) Strand = Plus / Minus Query: 376 cacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagacc 435 |||||||||||||||||||||||||||||||| || ||| ||||||| ||||||| |||| Sbjct: 55181 cacgaaaatacttttccgccgccgcaagcttctgtctccgcgagatcccatctggggacc 55122 Query: 436 cttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcatc 495 ||| || ||||||| ||||||| || | | ||||||||||||||||| || ||| Sbjct: 55121 gttct-ggtgccctgccggagggggattcgtacacggagggcttcttcatcaacaccatt 55063 Query: 496 gcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagcta 555 ||| ||||||||| |||||||||||||| ||||||| ||||||| ||| ||||||||| Sbjct: 55062 gcctctccaatgatgcgtgagtagttcaccacagaccttcgggtccatagctagtagcta 55003 Query: 556 gatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggagat 615 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55002 gatgtcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggagat 54943 Query: 616 ctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||||||| |||||| ||||| ||||| |||||||| ||||||||| Sbjct: 54942 ctatccgatgtaactttcttttgcggtgtgtttttcgagatctgatgaattg 54891 Score = 278 bits (140), Expect = 2e-71 Identities = 258/296 (87%), Gaps = 1/296 (0%) Strand = Plus / Minus Query: 372 gagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctgga 431 |||||||||||||||||||||| |||| |||||||| || ||| ||||||| ||||||| Sbjct: 49891 gagccacgaaaatacttttccgtcgccacaagcttctgtctccgcgagatcccatctggg 49832 Query: 432 gacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcat 491 |||| ||| || |||||| ||||||| || ||| | ||||||||||||||| || Sbjct: 49831 gaccgttct-ggtgccctgtcggagggggattcggacacgcagggcttcttcatcaacac 49773 Query: 492 catcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagta 551 ||| ||| |||| |||| |||||||||||||| || |||| ||||||| ||| ||||| Sbjct: 49772 cattgcctctccgatgatgcgtgagtagttcaccacacaccttcgggtccatagctagta 49713 Query: 552 gctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatgg 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49712 gctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatgg 49653 Query: 612 agatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||| |||||||||||| |||||| ||||| |||||||||||||||||||||||| Sbjct: 49652 agatttatccgatgtaactttcttttgcggtgtgtttgtcgagatccgatgaattg 49597 Score = 222 bits (112), Expect = 1e-54 Identities = 204/232 (87%), Gaps = 2/232 (0%) Strand = Plus / Plus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||||||||| |||||||| ||||||||||||| | |||||||| |||| Sbjct: 12217 gactaacttattaattcagtgccaagtgcgagttcctgtttttccg-tgtttttgactct 12275 Query: 134 tttcatatctgattttg-aacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| ||||||||||| |||||| | || || || |||| |||| ||||||||||||| Sbjct: 12276 tttcaaatctgattttggaacggattccagacagaagaaaaacccctaaatgattttttc 12335 Query: 193 ccgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagcccac 252 ||||||||||||||| || ||||| | |||||||||| ||| ||||| ||||||||||| Sbjct: 12336 ccgaacggaagaagaccatggggcttttgggccaagcgaggtgggctctagggagcccac 12395 Query: 253 gagctcccactccgccaccaggggggaggcggcagtgggcaggcttgtggcc 304 ||| ||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct: 12396 aagcccccactccgccaccaagggggaggcggcggtgggcaggcttgtggcc 12447 Score = 212 bits (107), Expect = 1e-51 Identities = 218/255 (85%), Gaps = 3/255 (1%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| Sbjct: 15388 ctataatttttgatggtttcatgttgttatcttgtcaactttggatgttttatatacctt 15329 Query: 61 --atacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgttttttc 118 ||| | |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 15328 ttatatcttttttgggactaactaattaattcagtgccaagtgccagttcctgttttttc 15269 Query: 119 tatgtttttggctcttttcatatctgatttt-gaacggagttcaaacgaaataaaatccc 177 | |||||||| |||||||||||| ||||||| ||||||||| |||| | ||||||| ||| Sbjct: 15268 tgtgtttttgactcttttcatatttgattttggaacggagtccaaatggaataaaacccc 15209 Query: 178 cgaaatgattttttcccgaacggaagaagatcagggggcctgtgggccaagccaggaggg 237 |||||| | ||||||| |||| |||||||||| |||| | || |||||||| |||| || Sbjct: 15208 cgaaataaatttttccagaacagaagaagatcgggggacttgagggccaaggcagggggc 15149 Query: 238 ctacagggagcccac 252 | | ||||||||||| Sbjct: 15148 ccatagggagcccac 15134 Score = 204 bits (103), Expect = 3e-49 Identities = 200/231 (86%), Gaps = 4/231 (1%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||| | ||||||||||||| ||||||||||||| | |||||| Sbjct: 92105 ctataatttttgatggtttcacgctgttatcttgtcaactttggatgttttgtttacctt 92164 Query: 61 --atacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgttttttc 118 ||| | |||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 92165 ttatatcttttttgggactaacttattaattcagtgccaagtgccagttcctgttttt-c 92223 Query: 119 tatgtttttggctcttttcatatctgattttg-aacggagttcaaacgaaataaaatccc 177 | |||||||| ||||||||| |||||||||| |||||||| |||||| ||||||||||| Sbjct: 92224 tgtgtttttgactcttttcacttctgattttggaacggagtccaaacggaataaaatccc 92283 Query: 178 cgaaatgattttttcccgaacggaagaagatcagggggcctgtgggccaag 228 |||||| ||||||||| ||||||||||||||| || ||| || |||||||| Sbjct: 92284 cgaaataattttttccagaacggaagaagatcgggaggcttgagggccaag 92334 Score = 159 bits (80), Expect = 1e-35 Identities = 138/156 (88%), Gaps = 1/156 (0%) Strand = Plus / Plus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| |||| Sbjct: 85468 gactaccttattaattcagtgccaagtgccagttcctgttttttctgtgtttttgactct 85527 Query: 134 tttcatatctgatttt-gaacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| |||||||||| ||||||||| |||||| ||||||||||||||||| | | ||| Sbjct: 85528 tttcagatctgattttggaacggagtccaaacggaataaaatccccgaaataaaatgttc 85587 Query: 193 ccgaacggaagaagatcagggggcctgtgggccaag 228 ||||||||||||||| || ||| || |||||||| Sbjct: 85588 tagaacggaagaagatcgggtggcttgagggccaag 85623 Score = 155 bits (78), Expect = 2e-34 Identities = 155/178 (87%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||| Sbjct: 30806 gactaacttattaattcagtgccaagtgccagttcctgtttttcctgtgtttttgactct 30747 Query: 134 tttcatatctgatttt-gaacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| |||||||||| |||||||| || ||| ||||||||||||||||| | |||||| Sbjct: 30746 tttcagatctgattttggaacggag-tccaacagaataaaatccccgaaataaatttttc 30688 Query: 193 ccgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagccc 250 | ||| |||||||||| |||| | || |||||||| |||| || | ||||||||||| Sbjct: 30687 cagaatagaagaagatcgggggacttgagggccaagacagggggcccacagggagccc 30630 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| Sbjct: 12143 ctataatttttgatggtttcatgctgttatcttgtcttctttggttgttttatgtacctt 12202 Score = 89.7 bits (45), Expect = 1e-14 Identities = 51/53 (96%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 30881 ctataatttttgatggtttcatgttgttatcttgtcaactttggatgttttat 30829 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||| | ||||||||||||| ||||||||||||| | |||||| Sbjct: 85393 ctataatttttgatggtttcacgctgttatcttgtcaactttggatgttttgtttacctt 85452 Score = 67.9 bits (34), Expect = 4e-08 Identities = 56/62 (90%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 292 caggcttgtggcctccctggcgc-cccctgacctagatcttgcgcctatatattccctaa 350 ||||||||||||||||||||||| |||||| ||||| |||| ||||||| ||||||||| Sbjct: 30591 caggcttgtggcctccctggcgctcccctgccctagctctttggcctataaattccctaa 30532 Query: 351 aa 352 || Sbjct: 30531 aa 30530 Score = 52.0 bits (26), Expect = 0.002 Identities = 54/62 (87%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 292 caggcttgtggcctccctggcgc-cccctgacctagatcttgcgcctatatattccctaa 350 |||||||||||||||||||| || |||||| ||||| | || ||||||| ||||||||| Sbjct: 15097 caggcttgtggcctccctggtgctcccctgccctagctatttggcctataaattccctaa 15038 Query: 351 aa 352 || Sbjct: 15037 aa 15036 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttg 128 ||||||| |||||| | ||| || ||||| |||| ||||||||||| |||||||| Sbjct: 50184 gactaacctattaacttagtgcctagtgcgagtttctgttttttctgtgtttttg 50130 Score = 44.1 bits (22), Expect = 0.58 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 295 gcttgtggcctccctggcgc-cccctgacctagatcttgcgcctatatattccctaaaaa 353 |||||||||| |||| |||| ||||| ||||| |||| ||||||| |||||||||||| Sbjct: 85691 gcttgtggcccccctcgcgctcccctaccctaggtctttggcctataaattccctaaaaa 85750 Query: 354 tc 355 || Sbjct: 85751 tc 85752
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 470 bits (237), Expect = e-129 Identities = 279/293 (95%) Strand = Plus / Plus Query: 375 ccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctggagac 434 ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||||| Sbjct: 37557 ccacgaaaacacttttccgccgccgcatgcttccgtttccgcgagatctcatctagagac 37616 Query: 435 ccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcatcat 494 ||||||||| ||||||| || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 37617 ccttcccggtgccctgccggtggggactttggagttggagggcttctacatcaacatcat 37676 Query: 495 cgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagtagct 554 ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 37677 cgcccgtccaatgactcatgagtagttcacttcagacctacgggttcgtagttagtagct 37736 Query: 555 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37737 agatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatggaga 37796 Query: 615 tctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 37797 tctatccgatgtaatcctctttggcggtgtgtttgtcgagatccgatgaattg 37849 Score = 258 bits (130), Expect = 2e-65 Identities = 217/246 (88%), Gaps = 3/246 (1%) Strand = Plus / Plus Query: 3 ataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt-- 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 37187 ataatttttgatggtttcatgttgttatcttgtcatctttggatgttttatgtacctttt 37246 Query: 61 atacnnnnnnngagactaacttattaattcagtaccaagtgccagttcctgttttttcta 120 ||| | |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 37247 atatcttttttgggactaacttattaattcagtgccaagtgccagttcctgttttttctg 37306 Query: 121 tgtttttggctcttttcatatctgatttt-gaacggagttcaaacgaaataaaatccccg 179 ||||| |||||||||||| |||||||||| ||||||||| |||| | ||||||||||||| Sbjct: 37307 tgtttctggctcttttcagatctgattttggaacggagtccaaatggaataaaatccccg 37366 Query: 180 aaatgattttttcccgaacggaagaagatcagggggcctgtgggccaagccaggagggct 239 |||| | ||||||||||||||||||||||| ||||| || || |||||||| ||| ||| Sbjct: 37367 aaataaaattttcccgaacggaagaagatcacggggcttgaggtccaagccaagagagct 37426 Query: 240 acaggg 245 |||||| Sbjct: 37427 acaggg 37432 Score = 240 bits (121), Expect = 5e-60 Identities = 178/197 (90%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||||||||| || ||| || |||| |||| |||||||||||||| ||| Sbjct: 85351 ggagggcttcttcatcaacaccatgacctctccgatgatgcgtgagtagttcaccataga 85292 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctctcttggatcttcaatacaa 590 |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85291 cctatgggtccatagctagtagctagatggcttcttctctctcttggatcttcaatacaa 85232 Query: 591 agttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttgt 650 ||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| Sbjct: 85231 agttcaccatgatcttcatggagatctatctgatgtaatcttcttttgcggtgtgtttgt 85172 Query: 651 cgagatccgatgaattg 667 ||||||| ||||||||| Sbjct: 85171 cgagatctgatgaattg 85155 Score = 240 bits (121), Expect = 5e-60 Identities = 178/197 (90%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||||||||| || ||| || || | |||| |||||||||||||| ||| Sbjct: 42051 ggagggcttcttcatcaacaccatgacctcttcgatgatgcgtgagtagttcaccataga 42110 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctctcttggatcttcaatacaa 590 ||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 42111 cctacgggtccatagctagtaactagatggcttcttttctctcttggatcttcaatacaa 42170 Query: 591 agttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttgt 650 |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| Sbjct: 42171 agttctccatgatcttcatggagatctatccgatgtaatcttcttttgtggtgtgtttgt 42230 Query: 651 cgagatccgatgaattg 667 ||||||||||||||||| Sbjct: 42231 cgagatccgatgaattg 42247 Score = 208 bits (105), Expect = 2e-50 Identities = 174/197 (88%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||| ||| ||||| | ||| |||||||| |||| ||||||||||||| |||| Sbjct: 97172 ggagggcatctacatcaactccattgcccctccgatgatgtgtgagtagttcaccacaga 97113 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctctcttggatcttcaatacaa 590 ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| | Sbjct: 97112 cctacgggtccatagctagtagctagatggcttcttctctctctttgatcttcaatacca 97053 Query: 591 agttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttgt 650 ||||| |||||||||||||||||||||||| ||||||| ||||| ||||| ||||||| Sbjct: 97052 tgttcttcatgatcttcatggagatctatcccatgtaatactcttttgcggtgtgtttgt 96993 Query: 651 cgagatccgatgaattg 667 ||||||||||||||||| Sbjct: 96992 cgagatccgatgaattg 96976 Score = 91.7 bits (46), Expect = 3e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 291 gcaggcttgtggcctccctggcgccccctgacctagatcttgcgcctatatattccctaa 350 ||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||| Sbjct: 37474 gcaggctagtggcctccctggcgccccctgacctagctccttcgcctatatattccctaa 37533 Query: 351 aa 352 || Sbjct: 37534 aa 37535 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||| ||||| |||||||||||||||||||||||| |||||||| | || Sbjct: 85746 gactaacttattaactcagtgccaagtgccagttcctgttttttccgtgtttttgaccct 85687 Query: 134 tttca 138 ||||| Sbjct: 85686 tttca 85682 Score = 73.8 bits (37), Expect = 7e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 |||||||||||||||||| |||| | ||||||||||| ||||||||||||||| Sbjct: 48241 ctataatttttgatggttccatgctattatcttgtcaactttggatgttttat 48189 Score = 63.9 bits (32), Expect = 6e-07 Identities = 48/52 (92%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtc-atctttggatgtttt 51 ||||||||||||||||||||||| | |||||||||| | ||||||||||||| Sbjct: 85822 ctataatttttgatggtttcatgctattatcttgtcaaactttggatgtttt 85771 Score = 63.9 bits (32), Expect = 6e-07 Identities = 48/52 (92%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtc-atctttggatgtttt 51 ||||||||||||||||||||||| | |||||||||| | ||||||||||||| Sbjct: 41582 ctataatttttgatggtttcatgctattatcttgtcaaactttggatgtttt 41633 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 75 actaacttattaattcagtaccaagtgccagttcctgttttt 116 ||||||||||||| ||||| ||||||| |||||||||||||| Sbjct: 41659 actaacttattaactcagtgccaagtgtcagttcctgttttt 41700 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttg 128 ||||||| |||||| ||||| ||||||||||||| ||||| |||| |||||||| Sbjct: 48156 gactaacctattaactcagtgccaagtgccagtttctgttgtttccgtgtttttg 48102 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 378 cgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatct 428 ||||| |||||||||||||||||||||||| || ||| | ||||| ||||| Sbjct: 41958 cgaaagtacttttccgccgccgcaagcttctgtctccgcaagatcccatct 42008 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 330 ttgcgcctatatattccctaaaaatc 355 |||||||||||||||||||||||||| Sbjct: 41912 ttgcgcctatatattccctaaaaatc 41937 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 516 gtagttcacttcagacctacgggtccgtagttagtagctagatggc 561 ||||||||| ||||||||||||||||||| |||| ||||||||| Sbjct: 8004 gtagttcaccacagacctacgggtccgtaggcagtacctagatggc 7959 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 512 gtgagtagttcacttcagacctacgggtccgtagttagtagctagatggc 561 ||||||||||||| |||||||| ||||| |||| |||| ||||||||| Sbjct: 14828 gtgagtagttcaccacagacctaagggtctgtaggcagtatctagatggc 14779 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 640 ggtatgtttgtcgagatccgatgaattg 667 ||||||||||| | |||||||||||||| Sbjct: 14696 ggtatgtttgttgggatccgatgaattg 14669
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 285 bits (144), Expect = 9e-74 Identities = 259/296 (87%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 372 gagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctgga 431 ||||||||||||||| |||||||||| ||||||||| |||||| ||||||| ||||||| Sbjct: 183453 gagccacgaaaatacgtttccgccgcggcaagcttctgtttccgcgagatcccatctggg 183512 Query: 432 gacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcat 491 |||| ||| || ||||| | ||||||| || ||| ||||||||||||||||| || Sbjct: 183513 gaccgttct-ggtgccctaccggagggggattcggacacggagggcttcttcatcaacac 183571 Query: 492 catcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagta 551 ||| ||| |||| |||| |||||||||||||| |||||| ||||||| ||| ||||| Sbjct: 183572 cattgcctctccgatgatgcgtgagtagttcaccatagaccttcgggtccatagctagta 183631 Query: 552 gctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatgg 611 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 183632 gctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatgttcatgg 183691 Query: 612 agatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||| |||||||| |||||| ||||| |||||||||||||||||||||||| Sbjct: 183692 agatctattcgatgtaactttcttttgcggtgtgtttgtcgagatccgatgaattg 183747
>gb|AF078801.1|AF078801 Hordeum vulgare degenerate retrotransposon cereba polyprotein pseudogene, partial sequence Length = 15230 Score = 278 bits (140), Expect = 2e-71 Identities = 258/296 (87%), Gaps = 1/296 (0%) Strand = Plus / Minus Query: 372 gagccacgaaaatacttttccgccgccgcaagcttccgtttccacgagatctcatctgga 431 ||||||||||||||||||||||| | |||||||||| | ||| | ||||| ||||||| Sbjct: 12773 gagccacgaaaatacttttccgctgtcgcaagcttctatctccgcaagatcccatctggg 12714 Query: 432 gacccttcccggcgccctgctggaggggactttggagttggagggcttcttcatcatcat 491 |||| ||| || ||||||| ||||||| || ||| ||||||||||||||||| || Sbjct: 12713 gaccattct-ggtgccctgccggagggggattcggacacggagggcttcttcatcaacac 12655 Query: 492 catcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtagttagta 551 ||| ||| |||| |||| |||||||||||||| ||||||| |||||| ||| ||||| Sbjct: 12654 cattgcctctcccatgatgcgtgagtagttcaccacagacctttgggtccatagctagta 12595 Query: 552 gctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatgg 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12594 gctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcatgg 12535 Query: 612 agatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||| Sbjct: 12534 agatctatccgatgtaactttcttttgcggtgtgtttgtcgagatccaatgaattg 12479 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 |||||||||||||||||| |||| | |||| || ||| ||||||||||||||| Sbjct: 13158 ctataatttttgatggttccatgctattatgttatcaactttggatgttttat 13106 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 151 aacggagttcaaacgaaataaaatccccgaaatgattttttcc 193 |||||||| |||||| ||||||| || ||| |||||||||||| Sbjct: 12993 aacggagtccaaacggaataaaacccacgagatgattttttcc 12951
>gb|DQ175924.1| Hordeum vulgare subsp. vulgare clone 33-8A-RB flanking T-DNA insertion sequence Length = 663 Score = 256 bits (129), Expect = 8e-65 Identities = 180/197 (91%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 |||||| |||||||||| || ||| || ||||||||| |||||||||||||| ||| Sbjct: 599 ggagggattcttcatcaacaccatgacctctccaatgatgcgtgagtagttcaccataga 540 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctctcttggatcttcaatacaa 590 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 cctacgggtccatagctagtagctagatggcttcttctctctcttggatcttcaatacaa 480 Query: 591 agttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttgt 650 ||||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 479 agttctccatgatattcatggagatctatccgatggaatcttcttttgcggtgtgtttgt 420 Query: 651 cgagatccgatgaattg 667 ||||||||||||||||| Sbjct: 419 cgagatccgatgaattg 403
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 252 bits (127), Expect = 1e-63 Identities = 245/283 (86%), Gaps = 1/283 (0%) Strand = Plus / Minus Query: 385 acttttccgccgccgcaagcttccgtttccacgagatctcatctggagacccttcccggc 444 |||||||||||||||||||||| || ||| | ||||| ||||||| || | | || || Sbjct: 38525 acttttccgccgccgcaagcttatgtctccgcaagatcccatctggggaacgt-cctggt 38467 Query: 445 gccctgctggaggggactttggagttggagggcttcttcatcatcatcatcgcccctcca 504 ||| ||| ||||||| || ||| ||| ||||||| ||||| || ||| || |||| Sbjct: 38466 gccgtgccggagggggattcggacacggaaggcttctccatcaacaccatgacctctccg 38407 Query: 505 atgactcgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttc 564 |||| |||||||||||||| |||||||||||||| ||| ||||| |||||||||||| Sbjct: 38406 atgatgcgtgagtagttcaccatagacctacgggtccatagctagtaactagatggcttc 38347 Query: 565 ttctctctcttggatcttcaatacaaagttctccatgatcttcatggagatctatccgat 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38346 ttctctctcttggatcttcaatacaaagttctccatgatcttcatggagatctatccgat 38287 Query: 625 gtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 38286 gtaatcttcttttgcggtgtgtttgtcgagatccgatgaattg 38244 Score = 224 bits (113), Expect = 3e-55 Identities = 146/157 (92%) Strand = Plus / Minus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 |||||||||||||| ||||||| |||||| ||| ||||| |||||||||||||||||| Sbjct: 77734 cgtgagtagttcaccatagacctatgggtccatagctagtaactagatggcttcttctct 77675 Query: 571 ctcttggatcttcaatacaaagttctccatgatcttcatggagatctatccgatgtaatc 630 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 77674 ctcttggatcttcaatacaaagttctccatgatcttcatggagatctatccgacgtaatc 77615 Query: 631 ttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||| ||||| ||||||||||||||||||||||| Sbjct: 77614 ttcttttgcggtgggtttgtcgagatccgatgaattg 77578 Score = 107 bits (54), Expect = 5e-20 Identities = 223/276 (80%), Gaps = 5/276 (1%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||| ||| | |||||||| ||||||| ||||||| ||||||||| | | Sbjct: 38834 gactaacttattaactcaatgccaagtgcgagttcctattttttccatgtttttgacccc 38775 Query: 134 tttcatatctgattttgaac-ggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| | ||||||||| ||||| |||||| || ||||||||||||| ||||||||| Sbjct: 38774 tttcagaggagattttgaaatggagtccaaacggaagaaaatccccgaaaagattttttc 38715 Query: 193 ccgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagcccac 252 ||||||||||||||| | | || || |||||||||||| || || ||||| ||||| Sbjct: 38714 tggaacggaagaagatcggagagcttgggggccaagccagaagagccccaggggccccac 38655 Query: 253 gagctcccactccgccaccaggggggaggcggcagtgggcaggcttgtggcctccctgg- 311 ||| ||||| |||| ||||||| || ||| |||||||||||| | |||||| Sbjct: 38654 aagcccccaccccgcggccagggg---agccgcaccatgcaggcttgtgggccccctgga 38598 Query: 312 cgccccctgacctagatcttgcgcctatatattccc 347 | ||||| |||||||||||||||||||| |||||| Sbjct: 38597 ggtcccctaacctagatcttgcgcctataaattccc 38562 Score = 79.8 bits (40), Expect = 1e-11 Identities = 111/132 (84%), Gaps = 2/132 (1%) Strand = Plus / Minus Query: 78 aacttattaattcagtaccaagtgccagttcctgtttttt-ctatgtttttggctctttt 136 |||||||||| ||| | ||||||||||||||||||||||| | ||||||||| | | ||| Sbjct: 78146 aacttattaactcaatgccaagtgccagttcctgtttttttccatgtttttgaccccttt 78087 Query: 137 catatctgattttgaa-cggagttcaaacgaaataaaatccccgaaatgattttttcccg 195 | | ||||| ||| |||||| |||||| || ||||||||||||| ||||||||| | Sbjct: 78086 cggaggagatttggaaacggagtccaaacggaagaaaatccccgaaaagattttttctgg 78027 Query: 196 aacggaagaaga 207 |||||||||||| Sbjct: 78026 aacggaagaaga 78015 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 315 cccctgacctagatcttgcgcctatatattccc 347 |||||||||||||||||||||||||| |||||| Sbjct: 77929 cccctgacctagatcttgcgcctataaattccc 77897 Score = 56.0 bits (28), Expect = 2e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 5 aatttttgatggtttcatgatgttatcttgtc-atctttggatgtttt 51 ||||||||||||||||||| | |||||||||| | ||||||||||||| Sbjct: 38906 aatttttgatggtttcatgctattatcttgtcaaactttggatgtttt 38859 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 385 acttttccgccgccgcaagcttccgtttccacgagatctcatctgg 430 ||||||||||||||||||||||| || ||| | ||||| ||||||| Sbjct: 77860 acttttccgccgccgcaagcttctgtctccgcaagatcccatctgg 77815 Score = 48.1 bits (24), Expect = 0.037 Identities = 43/48 (89%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 5 aatttttgatggtttcatgatgttatcttgtc-atctttggatgtttt 51 |||||| |||||||||||| | |||||||||| | ||||||||||||| Sbjct: 78222 aattttcgatggtttcatgctattatcttgtcaaactttggatgtttt 78175
>gb|AF509773.1| Hordeum vulgare subsp. vulgare isolate NRG050 Rpg1 region, genomic sequence Length = 2505 Score = 238 bits (120), Expect = 2e-59 Identities = 166/180 (92%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgtttttggctct 133 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct: 329 gactaacttattaattcagtgccaagtgccagttcctgttttttctgtgtttttggctct 270 Query: 134 tttcatatctgatttt-gaacggagttcaaacgaaataaaatccccgaaatgattttttc 192 ||||| |||||||||| ||||||||| |||||| ||||||||||||||||| | |||||| Sbjct: 269 tttcagatctgattttggaacggagtccaaacggaataaaatccccgaaataaatttttc 210 Query: 193 ccgaacggaagaagatcagggggcctgtgggccaagccaggagggctacagggagcccac 252 | |||||||||||||||||||||| || |||||||| |||||| ||||||||| |||||| Sbjct: 209 cagaacggaagaagatcagggggcttgagggccaaggcaggagagctacagggggcccac 150 Score = 103 bits (52), Expect = 7e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttatgtacctt 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct: 403 ctataatttttgatggtttcatgctgttatcttgtcatctttggatgttttatgaacctt 344 Score = 60.0 bits (30), Expect = 1e-05 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 292 caggcttgtggcctccctggcg-ccccctgacctagatcttgcgcctatatattccctaa 350 |||| ||||||||||||||||| ||||||||||||| || | || |||||||| |||||| Sbjct: 114 cagggttgtggcctccctggcggccccctgacctagctccttcgtctatatatcccctaa 55 Query: 351 aa 352 || Sbjct: 54 aa 53 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 375 ccacgaaaatacttttccgccgccgcaagctt 406 ||||||||| |||||||| ||||||||||||| Sbjct: 32 ccacgaaaacacttttccaccgccgcaagctt 1
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 184 bits (93), Expect = 2e-43 Identities = 143/157 (91%), Gaps = 2/157 (1%) Strand = Plus / Minus Query: 512 gtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctctc 571 |||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||| Sbjct: 180084 gtgagtagtttacttcagaccttcgggtccatagttattagctagatggcttcttctctc 180025 Query: 572 tctt-ggatcttcaatacaaagttctccatgatcttcatggagatctatccgatgtaatc 630 |||| |||||| ||||| |||||||||| ||||||| ||||||||||| |||||||||| Sbjct: 180024 tctttggatct-caataaaaagttctcctcgatcttcttggagatctattcgatgtaatc 179966 Query: 631 ttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||| ||||| | |||||||||||||||||||||| Sbjct: 179965 ttcttttgcggtgtatttgtcgagatccgatgaattg 179929 Score = 159 bits (80), Expect = 1e-35 Identities = 139/156 (89%), Gaps = 2/156 (1%) Strand = Plus / Minus Query: 513 tgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctctct 572 |||||||| |||| |||||| ||||||| |||||| ||||||||||||||||||||||| Sbjct: 199858 tgagtagtctactttagaccttcgggtccatagttattagctagatggcttcttctctct 199799 Query: 573 ctt-ggatcttcaatacaaagttctccatgatcttcatggagatctatccgatgtaatct 631 ||| |||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| Sbjct: 199798 ctttggatct-caatacaaagttctcctcaatcttcttggagatctattcgatgtaatct 199740 Query: 632 tctttggcggtatgtttgtcgagatccgatgaattg 667 ||||| ||||| |||||||| |||||| |||||||| Sbjct: 199739 tcttttgcggtgtgtttgtcaagatccaatgaattg 199704 Score = 123 bits (62), Expect = 8e-25 Identities = 166/198 (83%), Gaps = 2/198 (1%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||| |||| |||||||||| || |||| Sbjct: 202825 ggagggcttctacatcaacaccatagcctctccgatgatgtgtgagtagtttaccacaga 202766 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctctc-ttggatcttcaataca 589 || | ||||| |||||| |||||||||||||||||||||||| ||||||| |||||||| Sbjct: 202765 tcttcaggtccatagttattagctagatggcttcttctctctctttggatc-tcaataca 202707 Query: 590 aagttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttg 649 ||||||||| ||| || | ||||||||| | ||||||| | ||| ||||| |||||| Sbjct: 202706 aagttctcctcgattctcttagagatctattcaatgtaattcttttttgcggtgtgtttg 202647 Query: 650 tcgagatccgatgaattg 667 |||||||||||||||||| Sbjct: 202646 tcgagatccgatgaattg 202629 Score = 105 bits (53), Expect = 2e-19 Identities = 112/129 (86%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||| |||| |||||||||| || ||||| Sbjct: 266777 ggagggcttctacatcaacaccatagcctctccgatgaagtgtgagtagtttacctcaga 266718 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||||| ||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| Sbjct: 266717 cctacaggtccatagttagtagctagatggcttcttctctctttttggatc-tcaataca 266659 Query: 590 aagttctcc 598 | ||||||| Sbjct: 266658 atgttctcc 266650 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| |||||||| || | |||||||||| || ||||| Sbjct: 164212 ggagggcttctacatcaacaccatagcccctccgataaagtgtgagtagtttacctcaga 164271 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctct 572 ||||||||||| |||||| ||||||||||||||||||||||| Sbjct: 164272 cctacgggtccatagttattagctagatggcttcttctctct 164313 Score = 95.6 bits (48), Expect = 2e-16 Identities = 110/128 (85%), Gaps = 2/128 (1%) Strand = Plus / Plus Query: 472 gagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcagac 531 |||||||||| ||||| || ||| ||| |||| |||| |||||||||| | ||||||| Sbjct: 149374 gagggcttctacatcaacaccatagcctctccgatgaagtgtgagtagtttatttcagac 149433 Query: 532 ctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaatacaa 590 || ||||||| |||||| ||||||||| |||||||||||| | ||||||| ||||||||| Sbjct: 149434 cttcgggtccatagttattagctagattgcttcttctctctttttggatc-tcaatacaa 149492 Query: 591 agttctcc 598 |||||||| Sbjct: 149493 agttctcc 149500 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 609 tggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 ||||||||||| |||||||||||||||| | ||| |||||||| ||||||||||||||| Sbjct: 239623 tggagatctattcgatgtaatcttcttttgtggtgtgtttgtcaagatccgatgaattg 239681 Score = 56.0 bits (28), Expect = 2e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 ||||||||||| || || |||| | ||||| ||| |||||||||||||||||||||||| Sbjct: 215090 cgtgagtagtttaccacaaaccttccggtccatagctagtagctagatggcttcttctct 215149
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 149 bits (75), Expect = 1e-32 Identities = 171/199 (85%), Gaps = 3/199 (1%) Strand = Plus / Plus Query: 470 tggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcag 529 |||||||||||| ||||| || ||| ||| |||| | || |||||||||| || ||| Sbjct: 83861 tggagggcttctacatcaacaccatagcctctccgacgatgtgtgagtagtttaccacag 83920 Query: 530 acctacgggtccgtagttagtagctagatggcttcttctctctc-ttggatcttcaatac 588 |||| ||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||| Sbjct: 83921 accttcgggtccatagttattagctagatggcttcttctctctctttggatc-tcaatac 83979 Query: 589 aaagttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgttt 648 |||||||||| ||||||| ||||||||||| |||||||| || ||| ||||| ||||| Sbjct: 83980 aaagttctcctcgatcttcttggagatctattcgatgtaa-ctctttttgcggtgtgttt 84038 Query: 649 gtcgagatccgatgaattg 667 |||||||||||||||||| Sbjct: 84039 atcgagatccgatgaattg 84057
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 147 bits (74), Expect = 5e-32 Identities = 170/198 (85%), Gaps = 3/198 (1%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||| |||| |||||||||| || |||| Sbjct: 73814 ggagggcttctacatcaacaccatagcctctccgatgatgtgtgagtagtttaccacaga 73755 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctctc-ttggatcttcaataca 589 ||| ||||||| | |||| |||||||||||||||||||||||| ||||||| |||||| | Sbjct: 73754 ccttcgggtccattgttattagctagatggcttcttctctctctttggatc-tcaatata 73696 Query: 590 aagttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgtttg 649 ||||| ||| ||||||| ||||||||||| ||||||||| || ||| ||||| |||||| Sbjct: 73695 aagttttcctcgatcttcttggagatctattcgatgtaat-tttttttgcggtgtgtttg 73637 Query: 650 tcgagatccgatgaattg 667 |||||||||||||||||| Sbjct: 73636 tcgagatccgatgaattg 73619 Score = 147 bits (74), Expect = 5e-32 Identities = 128/142 (90%), Gaps = 3/142 (2%) Strand = Plus / Minus Query: 527 cagacctacgggtccgtagttagtagctagatggcttcttctctctc-ttggatcttcaa 585 ||||||| ||||||| |||||| |||||||||||||||||||||||| ||||||| |||| Sbjct: 68204 cagaccttcgggtccatagttattagctagatggcttcttctctctctttggatc-tcaa 68146 Query: 586 tacaaagttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatg 645 ||||||||||||| ||||||| ||||||||||| ||||||||| | ||| ||||| || Sbjct: 68145 tacaaagttctcctcgatcttcttggagatctattcgatgtaat-tctttttgcggtgtg 68087 Query: 646 tttgtcgagatccgatgaattg 667 |||||||||||||||||||||| Sbjct: 68086 tttgtcgagatccgatgaattg 68065
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 137 bits (69), Expect = 5e-29 Identities = 135/157 (85%) Strand = Plus / Plus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 ||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 19814 cgtgagtagtttaccacagacctacgggtccatagctagtagctagatggcttcttctct 19873 Query: 571 ctcttggatcttcaatacaaagttctccatgatcttcatggagatctatccgatgtaatc 630 ||||| ||| ||||||| | ||||||| ||| ||| ||||||||||| ||||||||| Sbjct: 19874 ctctttgattctcaataccatgttctcctcgatgttcttggagatctattcgatgtaata 19933 Query: 631 ttctttggcggtatgtttgtcgagatccgatgaattg 667 || ||| ||||| |||||| ||||| |||||||||| Sbjct: 19934 ttattttgcggtgtgtttgccgagactcgatgaattg 19970 Score = 131 bits (66), Expect = 3e-27 Identities = 135/157 (85%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 ||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 25273 cgtgagtagtttaccacagacctacgggtccatagctagtagctagatggcttcttctct 25332 Query: 571 ctcttggatcttcaatacaaagttctccatgatcttcatggagatctatccgatgtaatc 630 ||||| || ||||||| | ||||| | ||| ||| ||||||||||| ||||||||| Sbjct: 25333 ctctttcattctcaataccatgttct--acgatgttcttggagatctattcgatgtaata 25390 Query: 631 ttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||| |||| |||||| ||||||||||||||||| Sbjct: 25391 ttcttttacggtgtgtttgccgagatccgatgaattg 25427 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Plus Query: 375 ccacgaaaatacttttccgccgccgcaagc 404 |||| |||||||||||| |||||||||||| Sbjct: 86318 ccaccaaaatacttttcggccgccgcaagc 86347
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 127 bits (64), Expect = 5e-26 Identities = 158/184 (85%), Gaps = 4/184 (2%) Strand = Plus / Minus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| |||||||| |||| |||||||||| || |||||||| ||||||| ||| Sbjct: 17782 catcatcatagcccctccgatgaagtgtgagtagtttacctcagaccttcgggtccatag 17723 Query: 546 ttagtagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatct 605 |||||||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct: 17722 ttagtagctagatggcttcttctctctctttgaatctcaatacaaagttctcc-ccctct 17664 Query: 606 -tcatggagatctatccgatgtaatcttc-tttggcggtatgtttgtcgagatccgatga 663 | ||||||||||| ||||||||||||| ||| ||||| ||||||| ||||| |||||| Sbjct: 17663 cttgtggagatctattcgatgtaatcttctttttgcggtgtgtttgttgagat-cgatga 17605 Query: 664 attg 667 |||| Sbjct: 17604 attg 17601 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| |||||||| |||| |||||||||| || |||||||| ||||||| ||| Sbjct: 178564 catcatcatagcccctccgatgaagtgtgagtagtttacctcagaccttcgggtccatag 178505 Query: 546 ttagtagctagatggcttcttctctctcttggatcttcaatacaaagttctcc 598 |||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 178504 ttagtagctagatggcttcttctctctctttgaatctcaatacaaagttctcc 178452 Score = 113 bits (57), Expect = 8e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| || ||||| |||| |||||||||| || |||||||| ||||||| ||| Sbjct: 157345 catcatcatagctcctccgatgaagtgtgagtagtttacctcagaccttcgggtccatag 157286 Query: 546 ttagtagctagatggcttcttctctctcttggatcttcaatacaaagttctcc 598 |||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 157285 ttagtagctagatggcttcttctctctctttgaatctcaatacaaagttctcc 157233 Score = 113 bits (57), Expect = 8e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| |||||||| |||| |||||||||| || ||||||| ||||||| ||| Sbjct: 24818 catcatcatagcccctccgatgaagtgtgagtagtttaccgcagaccttcgggtccatag 24759 Query: 546 ttagtagctagatggcttcttctctctcttggatcttcaatacaaagttctcc 598 |||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 24758 ttagtagctagatggcttcttctctctctttgaatctcaatacaaagttctcc 24706 Score = 101 bits (51), Expect = 3e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 474 gggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcagacct 533 |||||||| |||||||||| |||||||| |||| |||||||||| | | ||||||| Sbjct: 228693 gggcttctacatcatcatccaagcccctccgatgaagtgtgagtagtttagtccagacct 228634 Query: 534 acgggtccgtagttagtagctagatggcttcttctctct 572 |||||||| |||||||||||||||||||||||||||||| Sbjct: 228633 acgggtccatagttagtagctagatggcttcttctctct 228595 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 470 tggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcag 529 |||||||||||| |||||||||| |||||||| |||| |||||||||| ||||| Sbjct: 223200 tggagggcttctacatcatcatccaagcccctccgatgaagtgtgagtagtttacttcca 223141 Query: 530 acctacggg 538 ||||||||| Sbjct: 223140 acctacggg 223132 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 |||||||||||||| |||||||| | |||| || ||| | ||||||||||||| Sbjct: 220224 ctataatttttgattgtttcatgctattatattatcaaccttggatgttttat 220172 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 |||||||||||||| ||| |||| | |||| |||| | | ||||||||||||| Sbjct: 144040 ctataatttttgattgttccatgctattatattgttaaccttggatgttttat 144092 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 |||||||||||||| ||| |||| | |||| || ||| | ||||||||||||| Sbjct: 6316 ctataatttttgattgttccatgctattatattatcaaccttggatgttttat 6368 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 609 tggagatctatccgatgtaatcttcttt 636 ||||||||||| ||||| |||||||||| Sbjct: 228574 tggagatctattcgatgcaatcttcttt 228547
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 125 bits (63), Expect = 2e-25 Identities = 170/199 (85%), Gaps = 5/199 (2%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| |||||||| |||| | |||||||||| || |||| Sbjct: 160216 ggagggcttctacatcaacaccatagcccctccgatgagttgtgagtagtttaccacaga 160275 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||| ||||||| |||||| |||||||||||||||||||||| | ||||||| |||||||| Sbjct: 160276 ccttcgggtccatagttattagctagatggcttcttctctctttttggatc-tcaataca 160334 Query: 590 aagttctccatgatct-tcatggagatctatccgatgtaatcttctttggcggtatgttt 648 | ||||||| ||| || ||||||||||| |||||||| || ||| ||||| ||||| Sbjct: 160335 atgttctcc-ccctctctcgtggagatctattcgatgtaa-ctctttttgcggtgtgttt 160392 Query: 649 gtcgagatccgatgaattg 667 ||||||||||||||||||| Sbjct: 160393 gtcgagatccgatgaattg 160411 Score = 105 bits (53), Expect = 2e-19 Identities = 166/197 (84%), Gaps = 5/197 (2%) Strand = Plus / Plus Query: 473 agggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcagacc 532 ||||||||| ||||| || ||| |||||||| |||| | |||||||||| || |||||| Sbjct: 153542 agggcttctacatcaacaccatagcccctccgatgagttgtgagtagtttaccacagacc 153601 Query: 533 tacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaatacaaa 591 | ||||||| |||||| |||||||||||||||||||||| | ||||||| ||||||||| Sbjct: 153602 ttcgggtccatagttattagctagatggcttcttctctctttttggatc-tcaatacaat 153660 Query: 592 gttctccatgatct-tcatggagatctatccgatgtaatcttctttggcggtatgtttgt 650 ||||||| ||| || ||||||||||| | |||||| || ||| ||||| ||||||| Sbjct: 153661 gttctcc-ccctctctcgtggagatctattcaatgtaa-ctctttttgcggtgtgtttgt 153718 Query: 651 cgagatccgatgaattg 667 | ||||||||||||||| Sbjct: 153719 caagatccgatgaattg 153735
>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence Length = 101101 Score = 125 bits (63), Expect = 2e-25 Identities = 170/199 (85%), Gaps = 5/199 (2%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||| |||| |||||||||| |||||||| Sbjct: 35297 ggagggcttctacatcaacaccatagcctctccgatgaagtgtgagtagtttacttcaga 35238 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||| ||||||| |||||| |||||||||||||||||||||| | ||||||| |||||||| Sbjct: 35237 ccttcgggtccatagttattagctagatggcttcttctctctttttggatc-tcaataca 35179 Query: 590 aagttctccatgatct-tcatggagatctatccgatgtaatcttctttggcggtatgttt 648 ||||||||| ||| | |||||| |||| |||||||||||||||| ||||| ||||| Sbjct: 35178 aagttctcc-ccctctcttgtggagagctattcgatgtaatcttcttttgcggtgtgttt 35120 Query: 649 gtcgagatccgatgaattg 667 || |||| ||||||||||| Sbjct: 35119 gttgaga-ccgatgaattg 35102 Score = 109 bits (55), Expect = 1e-20 Identities = 168/199 (84%), Gaps = 5/199 (2%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||| |||| |||||||||| | |||||| Sbjct: 40971 ggagggcttctacatcaacaccatagcctctccgatgaagtgtgagtagtttaattcaga 40912 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||| ||||||| |||||| | |||||||||||||||||||| | ||||||| |||||||| Sbjct: 40911 ccttcgggtccatagttatttgctagatggcttcttctctctttttggatc-tcaataca 40853 Query: 590 aagttctccatgatct-tcatggagatctatccgatgtaatcttctttggcggtatgttt 648 ||||||||| ||| | |||||| |||| |||||||||||||||| ||||| ||||| Sbjct: 40852 aagttctcc-ccctctcttgtggagagctattcgatgtaatcttcttttgcggtgtgttt 40794 Query: 649 gtcgagatccgatgaattg 667 || |||| ||||||||||| Sbjct: 40793 gttgaga-ccgatgaattg 40776 Score = 73.8 bits (37), Expect = 7e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||| Sbjct: 51772 cgtgagtagttcatcacagacctacaggttggtagctagtagctagatggcttcttctct 51713 Query: 571 ctcttggatcttc 583 ||| | ||||||| Sbjct: 51712 ctcctcgatcttc 51700 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 601 gatcttcatggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccga 660 ||||||| ||||| |||||||||||||||||||||| |||| | ||||| | ||||||| Sbjct: 51706 gatcttcttggagttctatccgatgtaatcttcttttacggtgtctttgttgggatccga 51647 Query: 661 tga 663 ||| Sbjct: 51646 tga 51644
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 123 bits (62), Expect = 8e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 550 tagctagatggcttcttctctctcttggatcttcaatacaaagttctccatgatcttcat 609 ||||||||||| |||||||||||||| |||||||||||||| |||||| ||| ||| | Sbjct: 109850 tagctagatgggttcttctctctctttgatcttcaatacaatattctcctcgatgttctt 109909 Query: 610 ggagatctatccgatgtaatcttctttggcggtatgtttgtcgagatccgatgaattg 667 |||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 109910 ggagatctattcgatgtaatcttcttttgcggtgcatttgttgagatccgatgaattg 109967 Score = 119 bits (60), Expect = 1e-23 Identities = 171/200 (85%), Gaps = 6/200 (3%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| |||| ||| |||| |||||||||| |||||||| Sbjct: 24265 ggagggcttctacatcaacaccatagcccttccgatgaagtgtgagtagtttacttcaga 24206 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||| ||||||| ||| ||||||||||||||||||||||||| | ||||||| |||||||| Sbjct: 24205 ccttcgggtccatagctagtagctagatggcttcttctctctttttggatc-tcaataca 24147 Query: 590 aagttctccatgatct-tcatggagatctatccgatgtaatcttc-tttggcggtatgtt 647 | ||||||| ||| || ||||||||||| ||||||||||||| ||| ||||| |||| Sbjct: 24146 atgttctcc-ccctctctcgtggagatctattcgatgtaatcttctttttgcggtgtgtt 24088 Query: 648 tgtcgagatccgatgaattg 667 ||| |||| ||||||||||| Sbjct: 24087 tgttgaga-ccgatgaattg 24069 Score = 111 bits (56), Expect = 3e-21 Identities = 132/152 (86%), Gaps = 4/152 (2%) Strand = Plus / Minus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| ||| |||| |||| |||||||||| || |||||||| ||||||| ||| Sbjct: 125311 catcatcatagcctctccgatgaagtgtgagtagtttacctcagaccttcgggtccatag 125252 Query: 546 ttagtagctagatggcttcttctctc-tcttggatcttcaatacaaagttctccatgatc 604 |||||||||||||||||||||||||| | ||||||| ||||||||||||||||| || Sbjct: 125251 ttagtagctagatggcttcttctctctttttggatc-tcaatacaaagttctcc-ccctc 125194 Query: 605 t-tcatggagatctatccgatgtaatcttctt 635 | || ||||||||||| ||||||||||||||| Sbjct: 125193 tctcgtggagatctattcgatgtaatcttctt 125162 Score = 109 bits (55), Expect = 1e-20 Identities = 143/167 (85%), Gaps = 4/167 (2%) Strand = Plus / Minus Query: 472 gagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcagac 531 |||||||||| ||||| || ||| |||| ||| |||| |||||||||| ||||||||| Sbjct: 10645 gagggcttctacatcaacaccatagcccttccgatgaagtgtgagtagtttacttcagac 10586 Query: 532 ctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaatacaa 590 || ||||||| ||| ||||||||||||||||||||||||| | ||||||| ||||||||| Sbjct: 10585 cttcgggtccatagctagtagctagatggcttcttctctctttttggatc-tcaatacaa 10527 Query: 591 agttctccatgatct-tcatggagatctatccgatgtaatcttcttt 636 ||||||| ||| || ||||||||||| |||||||||||||||| Sbjct: 10526 tgttctcc-ccctctctcgtggagatctattcgatgtaatcttcttt 10481 Score = 95.6 bits (48), Expect = 2e-16 Identities = 130/152 (85%), Gaps = 4/152 (2%) Strand = Plus / Minus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| ||| |||| |||| |||||||||| || |||||||| |||||| ||| Sbjct: 140830 catcatcatagcctctccgatgaagtgtgagtagtttacctcagacctttgggtccatag 140771 Query: 546 ttagtagctagatggcttcttctctc-tcttggatcttcaatacaaagttctccatgatc 604 |||||| ||||||||||||||||||| | ||||||| ||||||||||||||||| || Sbjct: 140770 ttagtatctagatggcttcttctctctttttggatc-tcaatacaaagttctcc-ccctc 140713 Query: 605 t-tcatggagatctatccgatgtaatcttctt 635 | || ||||||||||| ||||||||||||||| Sbjct: 140712 tctcgtggagatctattcgatgtaatcttctt 140681 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgttttt 127 ||||||| ||||||| |||| || |||| |||||||||||||| ||||||||| Sbjct: 173958 gactaacatattaatccagtgcctagtgttagttcctgttttttgtatgttttt 173905 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 380 aaaatacttttccgccgccgcaagcttccgtttccacgagatctcatct 428 |||||||| ||||||||||||||||||| ||| || |||||| ||||| Sbjct: 109679 aaaatactattccgccgccgcaagcttctgttcccgtgagatcccatct 109727
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 119 bits (60), Expect = 1e-23 Identities = 169/200 (84%), Gaps = 4/200 (2%) Strand = Plus / Plus Query: 470 tggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcag 529 |||||||||||| ||||| || | | |||||||| |||| | |||||||||| || ||| Sbjct: 107092 tggagggcttctacatcaacacccttgcccctccgatgagttgtgagtagtttaccacag 107151 Query: 530 acctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaatac 588 ||||| |||||| |||||| |||||||||||||||||||||| | ||||||| ||||||| Sbjct: 107152 acctatgggtccatagttattagctagatggcttcttctctctttttggatc-tcaatac 107210 Query: 589 aaagttctccatgatct-tcatggagatctatccgatgtaatcttctttggcggtatgtt 647 || ||||||| ||| | ||||||||||| ||||||||||| ||| || || |||| Sbjct: 107211 aatgttctcc-ccctctcttgtggagatctattcgatgtaatctctttttgcagtgtgtt 107269 Query: 648 tgtcgagatccgatgaattg 667 |||||||||||||||||||| Sbjct: 107270 tgtcgagatccgatgaattg 107289 Score = 103 bits (52), Expect = 7e-19 Identities = 167/200 (83%), Gaps = 4/200 (2%) Strand = Plus / Plus Query: 470 tggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcag 529 |||||||||||| ||||| || | | ||||||| |||| | |||||||||| || ||| Sbjct: 114534 tggagggcttctacatcaacacccttgcccctctgatgagttgtgagtagtttaccacag 114593 Query: 530 acctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaatac 588 |||||||||||| |||||| | |||||||||||||||||||| | |||||||| |||||| Sbjct: 114594 acctacgggtccatagttattcgctagatggcttcttctctctttttggatct-caatac 114652 Query: 589 aaagttctccatga-tcttcatggagatctatccgatgtaatcttctttggcggtatgtt 647 || |||||| |||| ||||||||||| ||||||||||| ||| ||||| |||| Sbjct: 114653 aatattctccccctctcttg-tggagatctattcgatgtaatctctttttgcggtgtgtt 114711 Query: 648 tgtcgagatccgatgaattg 667 | |||||||||||||||||| Sbjct: 114712 tctcgagatccgatgaattg 114731 Score = 85.7 bits (43), Expect = 2e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 ||||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 126551 cgtgagtagttcattgtagacctacgggtccgtaggtagtagctagatggcttcatctct 126492 Query: 571 ctc 573 ||| Sbjct: 126491 ctc 126489 Score = 63.9 bits (32), Expect = 6e-07 Identities = 57/64 (89%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 ||||||||||||| | |||||| | |||| ||||||||||||||||||||||| ||||| Sbjct: 121478 cgtgagtagttcattgtagacctgcaggtc-gtagttagtagctagatggcttcctctct 121420 Query: 571 ctct 574 |||| Sbjct: 121419 ctct 121416
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 117 bits (59), Expect = 5e-23 Identities = 167/199 (83%), Gaps = 3/199 (1%) Strand = Plus / Plus Query: 470 tggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcag 529 |||||||||||| ||||| || ||| ||| |||| |||| |||||||||| || ||| Sbjct: 58737 tggagggcttctacatcaacaccatagcctctccgatgatgtgtgagtagtttaccacag 58796 Query: 530 acctacgggtccgtagttagtagctagatggcttcttctctctc-ttggatcttcaatac 588 |||| | |||| |||||| |||||||||||||||||||||||| ||||||| ||||||| Sbjct: 58797 acctttgcgtccatagttattagctagatggcttcttctctctctttggatc-tcaatac 58855 Query: 589 aaagttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgttt 648 |||||||||| ||| || || |||||||| ||||||||| | ||| ||||| ||||| Sbjct: 58856 aaagttctcctcgattctcttgcagatctattcgatgtaat-tctttttgcggtgtgttt 58914 Query: 649 gtcgagatccgatgaattg 667 ||||| ||||||||||||| Sbjct: 58915 gtcgatatccgatgaattg 58933 Score = 79.8 bits (40), Expect = 1e-11 Identities = 166/200 (83%), Gaps = 6/200 (3%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||| |||| |||||||||| || ||||| Sbjct: 38333 ggagggcttctacatcaacaccatagcctctccgatgaagtgtgagtagtttacctcaga 38392 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 |||| |||||| ||||||||| |||||||||||| ||||| | |||||||| ||||||| Sbjct: 38393 cctatgggtccatagttagtacttagatggcttctcctctctttttggatct-caataca 38451 Query: 590 aagttctccatga-tcttcatggagatctatccgatgtaatcttc-tttggcggtatgtt 647 | ||| ||| |||| ||||||||||| ||||||||||||| ||| ||||| |||| Sbjct: 38452 atgttgtccccctctcttg-tggagatctattcgatgtaatcttctttttgcggtgtgtt 38510 Query: 648 tgtcgagatccgatgaattg 667 ||| ||||| |||||||||| Sbjct: 38511 tgttgagat-cgatgaattg 38529 Score = 79.8 bits (40), Expect = 1e-11 Identities = 166/200 (83%), Gaps = 6/200 (3%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 |||||| |||| ||||| || ||| ||| |||| |||| |||||||||| | | ||| Sbjct: 32810 ggaggggttctacatcaacaccatagcctctccgatgaagtgtgagtagtttaacttaga 32869 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||||||||||| ||||||||| ||||||||||||||||||| | |||||| | ||||||| Sbjct: 32870 cctacgggtccatagttagtacctagatggcttcttctctctttttggatat-caataca 32928 Query: 590 aagttctccatga-tcttcatggagatctatccgatgtaatcttc-tttggcggtatgtt 647 | ||||||| |||| ||||||||||| ||||||||||||| ||| ||||| |||| Sbjct: 32929 atgttctccccctctcttg-tggagatctattcgatgtaatcttctttttgcggtgtgtt 32987 Query: 648 tgtcgagatccgatgaattg 667 ||| |||| ||||||||||| Sbjct: 32988 tgttgaga-ccgatgaattg 33006
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 117 bits (59), Expect = 5e-23 Identities = 159/187 (85%), Gaps = 4/187 (2%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||| ||| ||||| || ||| |||| ||| |||| |||||||||| || ||||| Sbjct: 45134 ggagggcctctacatcaacaccatagcccttccgatgaagtgtgagtagtttacctcaga 45193 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||||||||||| |||||| |||||||||||||||||||||| | ||||||| |||||||| Sbjct: 45194 cctacgggtccatagttattagctagatggcttcttctctctttttggatc-tcaataca 45252 Query: 590 aagttctccatgatct-tcatggagatctatccgatgtaatcttctttggcggtatgttt 648 ||||||||| ||| | ||||||||||| |||||||||||||||| ||||| ||||| Sbjct: 45253 aagttctcc-ccctctcttgtggagatctattcgatgtaatcttcttttgcggtgtgttt 45311 Query: 649 gtcgaga 655 || |||| Sbjct: 45312 gttgaga 45318 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 |||||||||||||| ||| |||| | |||| || ||| | ||||||||||||| Sbjct: 42247 ctataatttttgattgttccatgctattatattatcaaccttggatgttttat 42195 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgttttat 53 |||||||||||||| ||| |||| | |||| || ||| | ||||||||||||| Sbjct: 35928 ctataatttttgattgttccatgctattatattatcaaccttggatgttttat 35876
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 113 bits (57), Expect = 8e-22 Identities = 124/141 (87%), Gaps = 4/141 (2%) Strand = Plus / Plus Query: 528 agacctacgggtccgtagttagtagctagatggcttcttctctctctt-ggatcttcaat 586 |||||| ||||||| || ||| |||||||||||||||||||||||||| |||||| |||| Sbjct: 96764 agaccttcgggtccata-ttattagctagatggcttcttctctctctttggatct-caat 96821 Query: 587 acaaagttctccatgatcttcatggagatctatccgatgtaatcttctttggcggtatgt 646 |||||||||||| ||||||| ||||||| ||| |||||||| || ||| ||||| ||| Sbjct: 96822 acaaagttctcctcgatcttcttggagatatattcgatgtaa-ctctttttgcggtgtgt 96880 Query: 647 ttgtcgagatccgatgaattg 667 |||||||||||| |||||||| Sbjct: 96881 ttgtcgagatccaatgaattg 96901 Score = 91.7 bits (46), Expect = 3e-15 Identities = 99/114 (86%), Gaps = 2/114 (1%) Strand = Plus / Plus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| ||| |||| |||| |||||||||| || |||||||| ||||||| ||| Sbjct: 135241 catcatcatagcctctccgatgaagtgtgagtagtttacctcagaccttcgggtccatag 135300 Query: 546 ttagtagctagatggcttcttctctctctt-ggatcttcaatacaaagttctcc 598 ||| ||||||||||||||||||||||| || ||||| ||||||||| ||||||| Sbjct: 135301 ttattagctagatggcttcttctctcttttcggatc-tcaatacaatgttctcc 135353 Score = 83.8 bits (42), Expect = 7e-13 Identities = 98/114 (85%), Gaps = 2/114 (1%) Strand = Plus / Plus Query: 486 catcatcatcgcccctccaatgactcgtgagtagttcacttcagacctacgggtccgtag 545 ||||||||| ||| |||| |||| |||||||||| || |||||| | ||||||| ||| Sbjct: 128551 catcatcatagcctctccgatgaagtgtgagtagtttacctcagacattcgggtccatag 128610 Query: 546 ttagtagctagatggcttcttctctc-tcttggatcttcaatacaaagttctcc 598 ||| |||||||||||||||||||||| | ||||||| ||||||||| ||||||| Sbjct: 128611 ttattagctagatggcttcttctctctttttggatc-tcaatacaatgttctcc 128663
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||||||| |||||||||| |||||||| Sbjct: 14340 ggagggcttctacatcaacaccatagcctttccaatgaagtgtgagtagtttacttcaga 14399 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctct 572 ||| ||||||| |||||| ||||||||||||||||||||||| Sbjct: 14400 ccttcgggtccatagttattagctagatggcttcttctctct 14441
>gb|AF532105.1|AF532104S2 Aegilops tauschii strain TA1649 cosmid 69-7-1 putative GAG-POL precursor, gene, complete cds; and unknown genes Length = 11825 Score = 97.6 bits (49), Expect = 5e-17 Identities = 111/129 (86%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatcgcccctccaatgactcgtgagtagttcacttcaga 530 ||||||||||| ||||| || ||| ||| |||| |||| |||||||||| || ||||| Sbjct: 4680 ggagggcttctacatcaacaccatagcctctccgatgatgtgtgagtagtttacctcaga 4621 Query: 531 cctacgggtccgtagttagtagctagatggcttcttctctc-tcttggatcttcaataca 589 ||| ||||||| |||||| |||||||||||||||||||||| | ||||||| |||||||| Sbjct: 4620 ccttcgggtccatagttattagctagatggcttcttctctctttttggatc-tcaataca 4562 Query: 590 aagttctcc 598 | ||||||| Sbjct: 4561 atgttctcc 4553
>gb|AY188517.1| Leymus mollis clone pLmIs51 Sabrina-like transposon, partial sequence Length = 1514 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/66 (90%), Gaps = 4/66 (6%) Strand = Plus / Plus Query: 529 gacctacgggtccgtagttagtagctagatggcttct-tctctctc---ttggatcttca 584 ||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 316 gacctacgggtccatagttagtagctagatggcttctctctctctctattttgatcttca 375 Query: 585 atacaa 590 |||||| Sbjct: 376 atacaa 381
>gb|AY641406.1| Hordeum vulgare subsp. vulgare putative NBS-LRR protein-like gene, complete sequence Length = 3944 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgtttt 51 |||||||||||||||||| |||| | ||||||||||| ||||||||||||| Sbjct: 3526 ctataatttttgatggttccatgctattatcttgtcaactttggatgtttt 3576
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggctt 563 |||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 100192 cgtgagtagttcgtatcagacctacgggtccgtaggcagtagctagatggctt 100244 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1 ctataatttttgatggtttcatg 23 ||||||||||||||||||||||| Sbjct: 101108 ctataatttttgatggtttcatg 101130
>gb|U91646.1|ACU91646 Agropyron cristatum strain Hycrest, primer OPE08 RAPD marker Length = 921 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 511 cgtgagtagttcacttcagacctacgggtccgtagttagtagctagatggcttcttctct 570 |||||||||| || | |||||| ||||||||||| |||||||||||||||| ||| | Sbjct: 297 cgtgagtagtccattgtagaccttcgggtccgtaggcagtagctagatggctttctctgt 238 Query: 571 ctcttggatcttcaatacaa 590 ||||| |||| ||||||||| Sbjct: 237 ctctttgatcctcaatacaa 218
>gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) pseudogene, complete cds Length = 15688 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 1 ctataatttttgatggtttcatgatgttatcttgtcatctttggatgtttt 51 |||||||||||||||||| |||| | ||||||||||| |||||||| |||| Sbjct: 417 ctataatttttgatggttccatgctattatcttgtcaactttggatatttt 367 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 372 gagccacgaaaatacttttccgccgccgcaagctt 406 |||||||||||||||||||| |||||||||||||| Sbjct: 35 gagccacgaaaatacttttctgccgccgcaagctt 1
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 513 tgagtagttcacttcagacctacgggtccgtagttagtagctagatggc 561 |||||||||||| ||||||||||||||| ||| ||||| ||||||||| Sbjct: 6479 tgagtagttcaccacagacctacgggtccatagctagtacctagatggc 6431
>gb|AY733033.1| Secale cereale map 4RL inter-microsatellite marker SCIM808-986 Length = 986 Score = 56.0 bits (28), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 528 agacctacgggtccgtagttagtagctagatggcttcttctctctct 574 |||| ||||||||| ||||||||||| |||||||||| |||| |||| Sbjct: 928 agacgtacgggtccatagttagtagcnagatggcttcctctcgctct 974
>dbj|AB088401.1| Aegilops speltoides DNA, centromeric repeat, clone:307-5, subclone:pBS301 Length = 1087 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 537 ggtccgtagttagtagctagatggcttcttctctct 572 ||||| |||||| ||||||||||||||||||||||| Sbjct: 44 ggtccatagttattagctagatggcttcttctctct 9
>gb|U95182.2|MMU95182 Mus musculus uroguanylin gene, complete cds Length = 7274 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcgcccct 501 ||||||||||||||||||||||||| Sbjct: 4776 cttcttcatcatcatcatcgcccct 4800
>gb|AF006668.1|AF006668 Mus musculus uroguanylin gene, complete cds Length = 3703 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcgcccct 501 ||||||||||||||||||||||||| Sbjct: 484 cttcttcatcatcatcatcgcccct 508
>emb|AL645563.12| Mouse DNA sequence from clone RP23-132L14 on chromosome 4, complete sequence Length = 214456 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcgcccct 501 ||||||||||||||||||||||||| Sbjct: 3095 cttcttcatcatcatcatcgcccct 3119
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 473 agggcttcttcatcatcatcatc 495 ||||||||||||||||||||||| Sbjct: 8175715 agggcttcttcatcatcatcatc 8175737
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 473 agggcttcttcatcatcatcatc 495 ||||||||||||||||||||||| Sbjct: 8173550 agggcttcttcatcatcatcatc 8173572
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 473 agggcttcttcatcatcatcatc 495 ||||||||||||||||||||||| Sbjct: 107145 agggcttcttcatcatcatcatc 107167
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 44.1 bits (22), Expect = 0.58 Identities = 46/54 (85%) Strand = Plus / Plus Query: 74 gactaacttattaattcagtaccaagtgccagttcctgttttttctatgttttt 127 ||||||| |||| || |||| || ||||||||||||||||| || |||||||| Sbjct: 107695 gactaacatattgatccagtgcctagtgccagttcctgtttgttgcatgttttt 107748
>emb|Z84564.1|HVE1329TR H.vulgare BARE-1 long terminal repeat DNA; ID E1329TR Length = 231 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 gcctatatattccctaaaaatc 355 |||||||||||||||||||||| Sbjct: 165 gcctatatattccctaaaaatc 186
>gb|AC008013.8| Homo sapiens 12 BAC RP11-551L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168986 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 gggggaggcggcagtgggcagg 295 |||||||||||||||||||||| Sbjct: 39624 gggggaggcggcagtgggcagg 39645
>ref|XM_635489.1| Dictyostelium discoideum K7 kinesin-like protein (DDB0206583), partial mRNA Length = 3768 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 ttcttcatcatcatcatcgcc 498 ||||||||||||||||||||| Sbjct: 2457 ttcttcatcatcatcatcgcc 2437
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 560 gcttcttctctctcttggatcttca 584 |||||||||||||||| |||||||| Sbjct: 55459 gcttcttctctctctttgatcttca 55483
>gb|AC161373.4| Mus musculus BAC clone RP23-308E4 from chromosome 6, complete sequence Length = 189028 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 188677 ctcttttcatatctgattttg 188697
>gb|AC116712.11| Mus musculus chromosome 1, clone RP23-105A17, complete sequence Length = 179782 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 ttttttctatgtttttggctc 132 ||||||||||||||||||||| Sbjct: 90410 ttttttctatgtttttggctc 90430
>gb|AF186996.5| Homo sapiens chromosome 3 clone CTA-388B5 map q21.2, complete sequence Length = 97789 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 116 ttctatgtttttggctcttttcatatctg 144 ||||||||||||||||| |||||| |||| Sbjct: 13453 ttctatgtttttggctcatttcatttctg 13425
>gb|AC121905.3| Mus musculus BAC clone RP24-176A1 from chromosome 3, complete sequence Length = 178517 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 117767 ctcttttcatatctgattttg 117787
>gb|AC124470.4| Mus musculus BAC clone RP24-174O2 from chromosome 6, complete sequence Length = 187005 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 42172 ctcttttcatatctgattttg 42192
>emb|AL355516.12| Human DNA sequence from clone RP11-442J17 on chromosome 13 Contains a KIAA0254 gene product pseudogene, two novel genes, a PHD finger protein 2 (PHF2) (GRC5) pseudogene and a CpG island, complete sequence Length = 93925 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 accaagtgccagttcctgttt 114 ||||||||||||||||||||| Sbjct: 23554 accaagtgccagttcctgttt 23534
>emb|AL109927.61|HSDJ547C9 Human DNA sequence from clone RP4-547C9 on chromosome 1p34.3-36.12 Contains the 3' end of the PPP1R8 protein phosphatase 1, regulatory (inhibitor) subunit 8, the C1orf38 gene for chromosome 1 open reading frame 38, the RPA2 gene for replication protein A2, 32kDa and a CpG island, complete sequence Length = 79438 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcgcccct 501 |||||||||| |||||||||||||| Sbjct: 29393 cttcttcatcttcatcatcgcccct 29417
>gb|AC103453.7| Rattus norvegicus 13 BAC CH230-127N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 199669 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 2057 ctcttttcatatctgattttg 2037
>emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4 Length = 307050 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgccc 499 ||||||||||||||||||||| Sbjct: 296369 tcttcatcatcatcatcgccc 296349
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcgc 497 ||||||||||||||||||||| Sbjct: 55913 cttcttcatcatcatcatcgc 55893
>emb|AJ721053.1| Gallus gallus mRNA for hypothetical protein, clone 33j3 Length = 2692 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 agggcttcttcatcatcatca 493 ||||||||||||||||||||| Sbjct: 699 agggcttcttcatcatcatca 679
>gb|AC110873.9| Homo sapiens 3 BAC RP11-172H14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 39959 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 116 ttctatgtttttggctcttttcatatctg 144 ||||||||||||||||| |||||| |||| Sbjct: 13942 ttctatgtttttggctcatttcatttctg 13914
>gb|AC003059.16| Mouse Chromosome 10 BAC Clone 595c9, complete sequence Length = 236317 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 222025 ctcttttcatatctgattttg 222045
>gb|AC021756.16| Mus musculus strain unknown chromosome 10 clone ct7-8a3, complete sequence Length = 132614 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 70958 ctcttttcatatctgattttg 70978
>ref|XM_627659.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_3130), partial mRNA Length = 1758 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 tcttcatcatcatcatcgccc 499 ||||||||||||||||||||| Sbjct: 448 tcttcatcatcatcatcgccc 468
>ref|XM_625464.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd4_4500), partial mRNA Length = 2070 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 ttcttcatcatcatcatcgcc 498 ||||||||||||||||||||| Sbjct: 1866 ttcttcatcatcatcatcgcc 1886
>emb|CR389568.1| Gallus gallus finished cDNA, clone ChEST870f1 Length = 917 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 agggcttcttcatcatcatca 493 ||||||||||||||||||||| Sbjct: 652 agggcttcttcatcatcatca 632
>ref|NM_058410.3| Caenorhabditis elegans Y34D9A.7 (Y34D9A.7) mRNA, complete cds Length = 1245 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 gggcttcttcatcatcatcat 494 ||||||||||||||||||||| Sbjct: 640 gggcttcttcatcatcatcat 620
>gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, region 59F5-59F8, BAC clone BACR02E09, complete sequence Length = 175118 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatc 495 ||||||| ||||||||||||||||| Sbjct: 14101 ggagggcgtcttcatcatcatcatc 14077
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcgc 497 ||||||||||||||||||||| Sbjct: 34750352 cttcttcatcatcatcatcgc 34750332
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 560 gcttcttctctctcttggatcttca 584 |||||||||||||||| |||||||| Sbjct: 20633419 gcttcttctctctctttgatcttca 20633443
>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone BACR48M01, complete sequence Length = 188272 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatc 495 ||||||| ||||||||||||||||| Sbjct: 158159 ggagggcgtcttcatcatcatcatc 158135
>gb|AC024756.1| Caenorhabditis elegans cosmid Y34D9A, complete sequence Length = 49307 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 gggcttcttcatcatcatcat 494 ||||||||||||||||||||| Sbjct: 25664 gggcttcttcatcatcatcat 25644
>gb|AC154136.13| Mus musculus BAC RP23-184A3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 220233 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 67777 ctcttttcatatctgattttg 67797
>dbj|AK099987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130B11, full insert sequence Length = 1592 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcgc 497 ||||||||||||||||||||| Sbjct: 454 cttcttcatcatcatcatcgc 434
>ref|NM_001006367.1| Gallus gallus acyl-Coenzyme A dehydrogenase family, member 11 (ACAD11), mRNA Length = 2692 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 agggcttcttcatcatcatca 493 ||||||||||||||||||||| Sbjct: 699 agggcttcttcatcatcatca 679
>emb|AL732341.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0213E10, complete sequence Length = 26755 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcgc 497 ||||||||||||||||||||| Sbjct: 2277 cttcttcatcatcatcatcgc 2257
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcgc 497 ||||||||||||||||||||| Sbjct: 91614 cttcttcatcatcatcatcgc 91594
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatcatcatc 495 ||||||| ||||||||||||||||| Sbjct: 191699 ggagggcgtcttcatcatcatcatc 191675
>emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 accaagtgccagttcctgttt 114 ||||||||||||||||||||| Sbjct: 210365 accaagtgccagttcctgttt 210385
>gb|AC147972.3| Gallus gallus BAC clone CH261-78M4 from chromosome unknown, complete sequence Length = 197959 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 ttttcatatctgattttgaacggag 157 |||||||||||||||||||| |||| Sbjct: 5967 ttttcatatctgattttgaaaggag 5991
>dbj|AP005058.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-19M12, complete sequence Length = 179546 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 accaagtgccagttcctgttt 114 ||||||||||||||||||||| Sbjct: 93528 accaagtgccagttcctgttt 93508
>gb|U41289.1|DDU41289 Dictyostelium discoideum K7 kinesin-like protein mRNA, complete cds Length = 4037 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 ttcttcatcatcatcatcgcc 498 ||||||||||||||||||||| Sbjct: 2664 ttcttcatcatcatcatcgcc 2644
>emb|AL672036.6| Mouse DNA sequence from clone RP23-395P1 on chromosome X, complete sequence Length = 186034 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 21 atgatgttatcttgtcatctttgga 45 ||||| ||||||||||||||||||| Sbjct: 147961 atgattttatcttgtcatctttgga 147937
>emb|AL772385.8| Mouse DNA sequence from clone RP23-340E12 on chromosome 4, complete sequence Length = 220248 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 ctcttttcatatctgattttg 150 ||||||||||||||||||||| Sbjct: 115328 ctcttttcatatctgattttg 115348
>emb|AL078475.2|HS29H4 Homo sapiens chromosome 21 PAC RPCIP704H429Q2, complete sequence Length = 107469 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 accaagtgccagttcctgttt 114 ||||||||||||||||||||| Sbjct: 79144 accaagtgccagttcctgttt 79164
>dbj|AP005213.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-97O24, complete sequence Length = 162364 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 accaagtgccagttcctgttt 114 ||||||||||||||||||||| Sbjct: 30192 accaagtgccagttcctgttt 30172
>ref|NM_123328.2| Arabidopsis thaliana DNA binding / transcription factor AT5G39660 transcript variant AT5G39660.2 mRNA, complete cds Length = 1692 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 349 tcttcatcatcatcatcgcc 330
>ref|NM_180775.2| Arabidopsis thaliana DNA binding / transcription factor AT5G39660 transcript variant AT5G39660.1 mRNA, complete cds Length = 1906 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 376 tcttcatcatcatcatcgcc 357
>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete sequence Length = 206234 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ttttctatgtttttggctct 133 |||||||||||||||||||| Sbjct: 77962 ttttctatgtttttggctct 77943
>ref|XM_638506.1| Dictyostelium discoideum hypothetical protein (DDB0167175), partial mRNA Length = 834 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 766 cttcttcatcatcatcatcg 747
>ref|XM_634010.1| Dictyostelium discoideum putative non-transporter ABC protein (DDB0220442), partial mRNA Length = 2649 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 2171 gcttcttcatcatcatcatc 2152
>ref|XM_516182.1| PREDICTED: Pan troglodytes similar to leucine rich repeat (in FLII) interacting protein 1; GC-binding factor 2 (LOC460050), mRNA Length = 9364 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ggggcctgtgggccaagccaggag 235 |||||||||||||| ||||||||| Sbjct: 3754 ggggcctgtgggcccagccaggag 3777
>ref|XM_525863.1| PREDICTED: Pan troglodytes similar to Zinc finger CCCH type domain containing protein 6 (LOC470482), mRNA Length = 3402 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 2312 tcttcatcatcatcatcgcc 2293
>ref|NM_146646.1| Mus musculus olfactory receptor 152 (Olfr152), mRNA Length = 951 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 641 gcttcttcatcatcatcatc 660
>gb|AE014826.1| Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence Length = 250663 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 108362 cttcttcatcatcatcatcg 108343
>gb|BT015791.1| Arabidopsis thaliana At5g39660 mRNA, complete cds Length = 1374 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 155 tcttcatcatcatcatcgcc 136
>gb|BC079893.1| Mus musculus neurexin I, mRNA (cDNA clone IMAGE:30544573) Length = 5697 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aggggggaggcggcagtggg 291 |||||||||||||||||||| Sbjct: 912 aggggggaggcggcagtggg 893
>gb|AC008234.9| Drosophila melanogaster clone BACR32M04, complete sequence Length = 148847 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcc 498 ||||||| || ||||||||||||||||| Sbjct: 69950 ggagggcatcatcatcatcatcatcgcc 69977
>ref|XM_461468.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F27511g) partial mRNA Length = 1482 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 436 cttcttcatcatcatcatcg 417
>gb|BC013889.2| Homo sapiens RNA binding motif protein 28, mRNA (cDNA clone MGC:11192 IMAGE:3926178), complete cds Length = 2613 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 799 cttcttcatcatcatcatcg 780
>ref|XM_951390.1| Neurospora crassa OR74A hypothetical protein (NCU01805.1) partial mRNA Length = 1386 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 221 cttcttcatcatcatcatcg 240
>gb|BC074310.1| Xenopus laevis cDNA clone MGC:84120 IMAGE:6950380, complete cds Length = 1520 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 483 cttcttcatcatcatcatcg 464
>ref|XM_328243.1| Neurospora crassa OR74A hypothetical protein (NCU01805.1) partial mRNA Length = 1386 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 221 cttcttcatcatcatcatcg 240
>ref|XM_714704.1| Candida albicans SC5314 putative anaphase promoting complex subunit Apc2 (CaO19_14113), mRNA Length = 2424 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 2098 cttcttcatcatcatcatcg 2079
>ref|XM_715040.1| Candida albicans SC5314 hypothetical protein (CaO19_7938), mRNA Length = 1860 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 242 cttcttcatcatcatcatcg 261
>ref|XM_714908.1| Candida albicans SC5314 hypothetical protein (CaO19_306), mRNA Length = 1860 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 242 cttcttcatcatcatcatcg 261
>ref|XM_714821.1| Candida albicans SC5314 putative anaphase promoting complex subunit Apc2 (CaO19_6821), mRNA Length = 2424 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 2098 cttcttcatcatcatcatcg 2079
>ref|XM_707296.1| Candida albicans SC5314 hypothetical protein (CaO19.13566), mRNA Length = 504 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 254 tcttcatcatcatcatcgcc 235
>ref|XM_707260.1| Candida albicans SC5314 hypothetical protein (CaO19.6147), mRNA Length = 504 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 254 tcttcatcatcatcatcgcc 235
>ref|NM_198581.1| Homo sapiens zinc finger CCCH-type containing 6 (ZC3H6), mRNA Length = 4791 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 1943 tcttcatcatcatcatcgcc 1924
>gb|AY318340.1| Mus musculus olfactory receptor Olfr152 (Olfr152) gene, complete cds Length = 945 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 635 gcttcttcatcatcatcatc 654
>gb|AC121151.11| Mus musculus chromosome 17, clone RP24-342C2, complete sequence Length = 205467 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 atcttgtcatctttggatgtttta 52 |||||||||||| ||||||||||| Sbjct: 118669 atcttgtcatctctggatgtttta 118692
>gb|AC116551.2| Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence Length = 153751 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 86957 cttcttcatcatcatcatcg 86938
>ref|XM_751756.1| Ustilago maydis 521 hypothetical protein (UM00702.1) partial mRNA Length = 5868 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 1535 tcttcatcatcatcatcgcc 1516
>ref|XM_821875.1| Trypanosoma brucei TREU927 nucleosome assembly protein-like protein (Tb09.160.4240) partial mRNA Length = 1269 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 1012 cttcttcatcatcatcatcg 993
>emb|AJ246952.1|ARA246952 Ascochyta rabiei microsatellite DNA, clone ArA08T Length = 387 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 224 cttcttcatcatcatcatcg 243
>ref|XM_749053.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g14780) partial mRNA Length = 1212 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 cttttccgccgccgcaagcttccg 409 ||||||||||||||||||| |||| Sbjct: 637 cttttccgccgccgcaagcgtccg 660
>ref|XM_749054.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g14790) partial mRNA Length = 864 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 cttttccgccgccgcaagcttccg 409 ||||||||||||||||||| |||| Sbjct: 495 cttttccgccgccgcaagcgtccg 472
>gb|AC125153.3| Mus musculus BAC clone RP24-378F2 from chromosome 6, complete sequence Length = 195328 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tcttttcatatctgattttg 150 |||||||||||||||||||| Sbjct: 118965 tcttttcatatctgattttg 118984
>gb|AC131744.3| Mus musculus BAC clone RP23-50E10 from chromosome 3, complete sequence Length = 225416 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 76179 gcttcttcatcatcatcatc 76160
>emb|CR318672.5| Zebrafish DNA sequence from clone DKEYP-75H12 in linkage group 7, complete sequence Length = 126789 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ccccctgacctagatcttgc 333 |||||||||||||||||||| Sbjct: 126433 ccccctgacctagatcttgc 126414
>gb|BC045267.1| Xenopus laevis palmdelphin, mRNA (cDNA clone MGC:52815 IMAGE:4724975), complete cds Length = 3749 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 1403 gcttcttcatcatcatcatc 1384
>ref|XM_719437.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04264) partial mRNA Length = 7179 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 6178 cttcttcatcatcatcatcg 6159
>ref|XM_949401.1| Theileria annulata strain Ankara hypothetical protein (TA19525) partial mRNA Length = 1395 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 ggcttcttctctctcttgga 578 |||||||||||||||||||| Sbjct: 1174 ggcttcttctctctcttgga 1155
>ref|XM_737609.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000050.00.0) partial mRNA Length = 2289 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 2278 cttcttcatcatcatcatcg 2259
>ref|NM_018077.1| Homo sapiens RNA binding motif protein 28 (RBM28), mRNA Length = 2809 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 845 cttcttcatcatcatcatcg 826
>emb|AL162723.12| Human DNA sequence from clone RP13-428K23 on chromosome X, complete sequence Length = 192780 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 tataatttttgatggtttcatgat 25 ||||||||||| |||||||||||| Sbjct: 46902 tataatttttgttggtttcatgat 46879
>emb|AL160151.16| Human DNA sequence from clone RP11-168G22 on chromosome 13 Contains a ribosomal protein L32 (RPL32) pseudogene, the 3' end of a novel gene and two novel genes, complete sequence Length = 154530 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tcatctttggatgttttatg 54 |||||||||||||||||||| Sbjct: 87029 tcatctttggatgttttatg 87048
>emb|AL080249.26|HSJ564F22 Human DNA sequence from clone RP4-564F22 on chromosome 20 Contains the LBP gene encoding the lipopolysaccharide-binding protein, a RNU71A gene for U71A small nucleolar RNA, a RNU71B gene for U71B small nucleolar RNA, a novel gene, a novel gene (FLJ33613) and 3 CpG islands, complete sequence Length = 95508 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cccttcccggcgccctgctg 453 |||||||||||||||||||| Sbjct: 14232 cccttcccggcgccctgctg 14213
>gb|AC126957.4| Rattus norvegicus 1 BAC CH230-12B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 215911 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 cttttcatatctgattttga 151 |||||||||||||||||||| Sbjct: 46550 cttttcatatctgattttga 46569
>gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, complete sequence Length = 163547 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 114315 cttcttcatcatcatcatcg 114334
>emb|BX066409.1|CNS09NEL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC5CH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 960 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 862 cttcttcatcatcatcatcg 881
>emb|BX066408.1|CNS09NEK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC5CH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 966 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 664 cttcttcatcatcatcatcg 645
>emb|BX052066.1|CNS09CC6 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC3AA07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 778 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 660 cttcttcatcatcatcatcg 641
>emb|BX045413.1|CNS0977D Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC19CC03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 722 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 616 cttcttcatcatcatcatcg 597
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccggcgccctgctggagggg 459 |||||||||||||||||||| Sbjct: 1129477 ccggcgccctgctggagggg 1129458
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 2191088 cttcttcatcatcatcatcg 2191069
>gb|AC162467.6| Mus musculus 10 BAC RP24-528H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172752 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 19239 cttcttcatcatcatcatcg 19258
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 ttcatcatcatcatcgcccc 500 |||||||||||||||||||| Sbjct: 195024 ttcatcatcatcatcgcccc 195005
>emb|AL669998.1|NCB1K11 Neurospora crassa DNA linkage group II BAC clone B1K11 Length = 88013 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 11276 cttcttcatcatcatcatcg 11295
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 134464 cttcttcatcatcatcatcg 134445
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project) Length = 137519 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 129932 cttcttcatcatcatcatcg 129913
>emb|AJ438613.1|NTA438613 Nicotiana tabacum mRNA for nucleosome assembly protein 1 - like protein 1 Length = 1531 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 1045 cttcttcatcatcatcatcg 1026
>emb|CR860321.1| Pongo pygmaeus mRNA; cDNA DKFZp459H064 (from clone DKFZp459H064) Length = 4055 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 1128 tcttcatcatcatcatcgcc 1109
>emb|BX950214.7| Zebrafish DNA sequence from clone CH211-214C2 in linkage group 5, complete sequence Length = 197499 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 ttgatggtttcatgatgttatctt 33 |||||| ||||||||||||||||| Sbjct: 182491 ttgatgctttcatgatgttatctt 182468
>emb|BX465185.8| Zebrafish DNA sequence from clone CH211-39F23 in linkage group 23, complete sequence Length = 148690 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ggcttcttcatcatcatcat 494 |||||||||||||||||||| Sbjct: 120248 ggcttcttcatcatcatcat 120267
>dbj|AK131416.1| Homo sapiens cDNA FLJ16526 fis, clone OCBBF2006987 Length = 3130 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 2860 tcttcatcatcatcatcgcc 2841
>dbj|AK127776.1| Homo sapiens cDNA FLJ45877 fis, clone OCBBF3008835 Length = 4791 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 1943 tcttcatcatcatcatcgcc 1924
>dbj|AK123404.1| Homo sapiens cDNA FLJ41410 fis, clone BRHIP2001074 Length = 2591 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 491 tcttcatcatcatcatcgcc 472
>gb|AC112127.5| Homo sapiens 3 BAC RP11-20N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 37940 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cttttcatatctgattttga 151 |||||||||||||||||||| Sbjct: 5869 cttttcatatctgattttga 5850
>gb|AC016644.9| Homo sapiens chromosome 5 clone RP11-52M14, complete sequence Length = 157751 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tcttttcatatctgattttg 150 |||||||||||||||||||| Sbjct: 155886 tcttttcatatctgattttg 155867
>dbj|AK001239.1| Homo sapiens cDNA FLJ10377 fis, clone NT2RM2001989, weakly similar to NUCLEOLAR PROTEIN NOP4 Length = 2809 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 845 cttcttcatcatcatcatcg 826
>gb|AC116665.1| Papio hamadryas chromosome , clone RP41-119J13, complete sequence Length = 176602 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 caggggggaggcggcagtgg 290 |||||||||||||||||||| Sbjct: 71577 caggggggaggcggcagtgg 71558
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 1499549 cttcttcatcatcatcatcg 1499530
>gb|AC026182.4| Homo sapiens chromosome 3 clone RP11-279B12 map 3p, complete sequence Length = 167179 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ttttcatatctgattttgaa 152 |||||||||||||||||||| Sbjct: 73489 ttttcatatctgattttgaa 73508
>gb|AY073450.1| Mus musculus olfactory receptor MOR181-1 gene, complete cds Length = 951 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 641 gcttcttcatcatcatcatc 660
>dbj|AK137407.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630047F03 product:neurexin I, full insert sequence Length = 4821 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aggggggaggcggcagtggg 291 |||||||||||||||||||| Sbjct: 984 aggggggaggcggcagtggg 965
>dbj|AK139280.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730090O12 product:Neurexin 1-alpha precursor (Neurexin I-alpha) homolog [Rattus norvegicus], full insert sequence Length = 4300 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aggggggaggcggcagtggg 291 |||||||||||||||||||| Sbjct: 929 aggggggaggcggcagtggg 910
>gb|AY072012.1| Arabidopsis thaliana AT5g39660/MIJ24_130 mRNA sequence Length = 1421 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 310 tcttcatcatcatcatcgcc 291
>dbj|AK163484.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230220E16 product:neurexin I, full insert sequence Length = 3102 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aggggggaggcggcagtggg 291 |||||||||||||||||||| Sbjct: 946 aggggggaggcggcagtggg 927
>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome Length = 305107 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 183529 cttcttcatcatcatcatcg 183548
>gb|AY058124.1| Arabidopsis thaliana AT5g39660/MIJ24_130 mRNA sequence Length = 291 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 220 tcttcatcatcatcatcgcc 201
>gb|AC008937.7| Homo sapiens chromosome 5 clone CTD-2310F14, complete sequence Length = 171480 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tcttttcatatctgattttg 150 |||||||||||||||||||| Sbjct: 114891 tcttttcatatctgattttg 114872
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 ttggatcttcaatacaaagt 593 |||||||||||||||||||| Sbjct: 96716 ttggatcttcaatacaaagt 96735
>gb|AY056804.1| Arabidopsis thaliana AT5g39660/MIJ24_130 mRNA, complete cds Length = 1803 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 349 tcttcatcatcatcatcgcc 330
>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence Length = 165090 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 5675 cttcttcatcatcatcatcg 5694
>ref|NM_075132.2| Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-4) (par-4) mRNA, complete cds Length = 2328 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 321 cttcttcatcatcatcatcg 302
>ref|NM_001017704.1| Danio rerio zgc:112207 (zgc:112207), mRNA Length = 883 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 gggcttcttcatcatcatca 493 |||||||||||||||||||| Sbjct: 66 gggcttcttcatcatcatca 85
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttttttctatgtttttggct 131 |||||||||||||||||||| Sbjct: 4186870 ttttttctatgtttttggct 4186851
>gb|AC104650.2| Homo sapiens BAC clone RP11-117J13 from 4, complete sequence Length = 163948 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 gatctcatctggagaccctt 438 |||||||||||||||||||| Sbjct: 98170 gatctcatctggagaccctt 98151
>emb|BX830102.1|CNS0A03T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB5ZA10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1750 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 318 tcttcatcatcatcatcgcc 299
>emb|BX830939.1|CNS09ZHX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS40ZB11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1803 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 376 tcttcatcatcatcatcgcc 357
>gb|BC093266.1| Danio rerio zgc:112207, mRNA (cDNA clone MGC:112207 IMAGE:7435205), complete cds Length = 883 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 gggcttcttcatcatcatca 493 |||||||||||||||||||| Sbjct: 66 gggcttcttcatcatcatca 85
>gb|AC115115.4| Homo sapiens BAC clone RP11-812M14 from 2, complete sequence Length = 124457 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 77466 tcttcatcatcatcatcgcc 77447
>gb|AC080094.5| Homo sapiens BAC clone RP11-1007E2 from 2, complete sequence Length = 134001 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 ttggagttggagggcttctt 482 |||||||||||||||||||| Sbjct: 42919 ttggagttggagggcttctt 42900
>gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromosome 7, complete sequence Length = 172449 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 95981 cttcttcatcatcatcatcg 95962
>dbj|AK222716.1| Homo sapiens mRNA for RNA binding motif protein 28 variant, clone: COL06020 Length = 2608 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 807 cttcttcatcatcatcatcg 788
>gb|AF369029.2| White spot syndrome virus, complete genome Length = 292967 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 232325 cttcttcatcatcatcatcg 232344
>gb|AC026423.9| Homo sapiens chromosome 16 clone CTD-2169M19, complete sequence Length = 116130 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ggctcttttcatatctgatt 147 |||||||||||||||||||| Sbjct: 4556 ggctcttttcatatctgatt 4575
>gb|AC021066.37| Homo sapiens 12 BAC RP11-845M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158285 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ggagggcttcttcatcatca 490 |||||||||||||||||||| Sbjct: 20924 ggagggcttcttcatcatca 20905
>gb|AC140918.1| Caenorhabditis briggsae cosmid CB020L07, complete sequence Length = 104788 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gtaccaagtgccagttcctg 111 |||||||||||||||||||| Sbjct: 94148 gtaccaagtgccagttcctg 94129
>gb|AC011473.4|AC011473 Homo sapiens chromosome 19, BAC BC349142 (CTC-518B2), complete sequence Length = 132323 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 ggaggggactttggagttgg 472 |||||||||||||||||||| Sbjct: 43832 ggaggggactttggagttgg 43813
>gb|AC137488.2| Homo sapiens chromosome 16 clone CTD-2506I5, complete sequence Length = 167135 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 tttggatgttttatgtaccttata 63 ||||||| |||||||||||||||| Sbjct: 4083 tttggatattttatgtaccttata 4060
>gb|AF160189.1|AF160189 Caenorhabditis elegans putative serine-threonine kinase PAR-4 (par-4) mRNA, complete cds Length = 2351 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 344 cttcttcatcatcatcatcg 325
>dbj|AB167716.1| Rhizopus oryzae ldhB gene for lactate dehydrogenase, complete cds, strain: NBRC 4747 Length = 5728 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 4882 cttcttcatcatcatcatcg 4901
>dbj|AB167715.1| Rhizopus oryzae ldhB gene for lactate dehydrogenase, complete cds, strain: NBRC 4707 Length = 4810 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 3960 cttcttcatcatcatcatcg 3979
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttttttctatgtttttggct 131 |||||||||||||||||||| Sbjct: 70492 ttttttctatgtttttggct 70473
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttttttctatgtttttggct 131 |||||||||||||||||||| Sbjct: 7924 ttttttctatgtttttggct 7905
>dbj|AB012243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIJ24 Length = 68697 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 51249 tcttcatcatcatcatcgcc 51230
>dbj|AB111887.1| Homo sapiens mRNA for KIAA2035 protein Length = 10939 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tcttcatcatcatcatcgcc 498 |||||||||||||||||||| Sbjct: 2320 tcttcatcatcatcatcgcc 2301
>gb|AC006531.1|AC006531 Homo sapiens chromosome 16 clone 113K5, complete sequence Length = 167525 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ggctcttttcatatctgatt 147 |||||||||||||||||||| Sbjct: 162904 ggctcttttcatatctgatt 162923
>ref|XM_310129.2| Anopheles gambiae str. PEST ENSANGP00000019967 (ENSANGG00000017478), partial mRNA Length = 22983 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 2140 gcttcttcatcatcatcatc 2121
>ref|XM_309616.2| Anopheles gambiae str. PEST ENSANGP00000022824 (ENSANGG00000021645), mRNA Length = 1584 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 711 cttcttcatcatcatcatcg 692
>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome Length = 307287 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 217137 cttcttcatcatcatcatcg 217156
>emb|AL132898.2|CEY59A8B Caenorhabditis elegans YAC Y59A8B, complete sequence Length = 174662 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 cttcttcatcatcatcatcg 496 |||||||||||||||||||| Sbjct: 170642 cttcttcatcatcatcatcg 170623
>gb|AC150560.5| Mus musculus BAC clone RP23-16I14 from 15, complete sequence Length = 208801 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ttttctatgtttttggctct 133 |||||||||||||||||||| Sbjct: 182399 ttttctatgtttttggctct 182380
>gb|AE003682.4| Drosophila melanogaster chromosome 3R, section 20 of 118 of the complete sequence Length = 224614 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatcatcatcgcc 498 ||||||| || ||||||||||||||||| Sbjct: 86023 ggagggcatcatcatcatcatcatcgcc 86050
>gb|AC163725.4| Pan troglodytes BAC clone CH251-612A20 from chromosome unknown, complete sequence Length = 179999 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tcttttcatatctgattttg 150 |||||||||||||||||||| Sbjct: 119611 tcttttcatatctgattttg 119592
>dbj|AB093249.2| Mus musculus mRNA for mKIAA0578 protein Length = 5783 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aggggggaggcggcagtggg 291 |||||||||||||||||||| Sbjct: 981 aggggggaggcggcagtggg 962
>emb|CR753832.8| Zebrafish DNA sequence from clone DKEY-71C18 in linkage group 5, complete sequence Length = 122496 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ttgatggtttcatgatgttatctt 33 |||||| ||||||||||||||||| Sbjct: 45770 ttgatgctttcatgatgttatctt 45793
>gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome 17, complete sequence Length = 178835 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aggggggaggcggcagtggg 291 |||||||||||||||||||| Sbjct: 14042 aggggggaggcggcagtggg 14023
>emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chromosome 2, complete sequence Length = 204020 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 gcttcttcatcatcatcatc 495 |||||||||||||||||||| Sbjct: 23330 gcttcttcatcatcatcatc 23349
>gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome 17, complete sequence Length = 211272 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 aggggggaggcggcagtggg 291 |||||||||||||||||||| Sbjct: 89149 aggggggaggcggcagtggg 89168
>emb|Y19215.1|HSPSIHHBC Homo sapiens putative psihHbC pseudogene for hair keratin, exons 1 to 9 Length = 10571 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 ggagggcttcttcatcatca 490 |||||||||||||||||||| Sbjct: 2437 ggagggcttcttcatcatca 2456
>gb|AC026214.4| Homo sapiens chromosome 3 clone RP11-717M12 map 3p, complete sequence Length = 174645 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ttttcatatctgattttgaa 152 |||||||||||||||||||| Sbjct: 171042 ttttcatatctgattttgaa 171061 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,600,161 Number of Sequences: 3902068 Number of extensions: 6600161 Number of successful extensions: 262217 Number of sequences better than 10.0: 201 Number of HSP's better than 10.0 without gapping: 201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 260785 Number of HSP's gapped (non-prelim): 1349 length of query: 667 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 644 effective length of database: 17,143,297,704 effective search space: 11040283721376 effective search space used: 11040283721376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
