| Clone Name | baal41m15 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X56803.1|TAMRNAU T.aestivum L. mRNA for ubiquitin Length = 436 Score = 77.8 bits (39), Expect = 1e-11 Identities = 68/77 (88%), Gaps = 3/77 (3%) Strand = Plus / Plus Query: 70 taccgtactgtgatgcagtattatcgtttgtatctttgaactt---ctggtgcgcagcag 126 |||| |||||||||||||| |||||||||||||||| ||||| |||||| | ||||| Sbjct: 349 taccatactgtgatgcagtgttatcgtttgtatcttcaaacttctgctggtgtggagcag 408 Query: 127 ctttggtgaactatgaa 143 ||||||||||||||||| Sbjct: 409 ctttggtgaactatgaa 425
>emb|X56601.1|TAUBIQU Wheat mRNA for ubiquitin Length = 436 Score = 77.8 bits (39), Expect = 1e-11 Identities = 68/77 (88%), Gaps = 3/77 (3%) Strand = Plus / Plus Query: 70 taccgtactgtgatgcagtattatcgtttgtatctttgaactt---ctggtgcgcagcag 126 |||| |||||||||||||| |||||||||||||||| ||||| |||||| | ||||| Sbjct: 349 taccatactgtgatgcagtgttatcgtttgtatcttcaaacttctgctggtgtggagcag 408 Query: 127 ctttggtgaactatgaa 143 ||||||||||||||||| Sbjct: 409 ctttggtgaactatgaa 425
>gb|DQ086482.1| Triticum aestivum ubiquitin (Ubiq) mRNA, partial cds Length = 400 Score = 65.9 bits (33), Expect = 4e-08 Identities = 62/71 (87%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 70 taccgtactgtgatgcagtattatcgtttgtatctttgaactt---ctggtgcgcagcag 126 |||| |||||||||||||| |||||||||||||||| ||||| |||||| | ||||| Sbjct: 330 taccatactgtgatgcagtgttatcgtttgtatcttcaaacttctgctggtgtggagcag 389 Query: 127 ctttggtgaac 137 ||||||||||| Sbjct: 390 ctttggtgaac 400
>gb|AC124418.4| Mus musculus BAC clone RP24-318G17 from chromosome 18, complete sequence Length = 167998 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 tttgtatctttgaacttctgg 116 ||||||||||||||||||||| Sbjct: 9395 tttgtatctttgaacttctgg 9415
>gb|AC102411.12| Mus musculus chromosome 18, clone RP24-374D7, complete sequence Length = 171918 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 tttgtatctttgaacttctgg 116 ||||||||||||||||||||| Sbjct: 92359 tttgtatctttgaacttctgg 92379
>gb|AC154838.2| Mus musculus BAC clone RP23-64F2 from chromosome 14, complete sequence Length = 224431 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 tgggttcacaagcccctgtcc 36 ||||||||||||||||||||| Sbjct: 146525 tgggttcacaagcccctgtcc 146545
>gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, complete sequence Length = 210643 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 tttgtatctttgaacttctgg 116 ||||||||||||||||||||| Sbjct: 17688 tttgtatctttgaacttctgg 17668
>gb|AC147073.2| Pan troglodytes BAC clone RP43-169D10 from 7, complete sequence Length = 159447 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aactatgaaaaataagtgag 154 |||||||||||||||||||| Sbjct: 111175 aactatgaaaaataagtgag 111194
>gb|AC002381.1| Homo sapiens BAC clone CTB-20D2 from 7, complete sequence Length = 172533 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aactatgaaaaataagtgag 154 |||||||||||||||||||| Sbjct: 55066 aactatgaaaaataagtgag 55047
>gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, complete sequence Length = 140363 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aactatgaaaaataagtgag 154 |||||||||||||||||||| Sbjct: 52403 aactatgaaaaataagtgag 52422
>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence Length = 208178 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aactatgaaaaataagtgag 154 |||||||||||||||||||| Sbjct: 55251 aactatgaaaaataagtgag 55270
>emb|AL627317.7| Human DNA sequence from clone RP11-316C12 on chromosome 1 Contains the 3' end of the NEGR1 gene for neuronal growth regulator 1 and a novel gene, complete sequence Length = 93633 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aatggagtctgtctctgtct 70 |||||||||||||||||||| Sbjct: 1606 aatggagtctgtctctgtct 1587
>emb|AL512506.8| Human DNA sequence from clone RP11-5G9 on chromosome 13 Contains the 5' end of a novel gene, parts of 2 novel genes, a diacylglycerol kinase pseudogene and a CpG island, complete sequence Length = 167875 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 aatggagtctgtctctgtct 70 |||||||||||||||||||| Sbjct: 3029 aatggagtctgtctctgtct 3048
>emb|AL358453.8| Human DNA sequence from clone RP11-115M14 on chromosome 1 Contains a cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene, complete sequence Length = 108934 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aatggagtctgtctctgtct 70 |||||||||||||||||||| Sbjct: 108540 aatggagtctgtctctgtct 108521
>emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on chromosome 13 Contains parts of 2 novel genes and a CpG island, complete sequence Length = 157175 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 aatggagtctgtctctgtct 70 |||||||||||||||||||| Sbjct: 146144 aatggagtctgtctctgtct 146163
>emb|AL136450.8| Human DNA sequence from clone RP3-510O21 on chromosome Xq25-26.1 Contains the 3' end of a novel gene (FLJ11362), the 3' end of the ELF4 gene for E74-like factor 4 (ets domain transcription factor) (MEF, ELFR) and a CpG island, complete sequence Length = 43480 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ctctgggttcacaagcccctgtcc 36 |||||||||| ||||||||||||| Sbjct: 9372 ctctgggttcccaagcccctgtcc 9395
>gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chromosome 7, complete sequence Length = 231294 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aactatgaaaaataagtgag 154 |||||||||||||||||||| Sbjct: 137671 aactatgaaaaataagtgag 137652
>ref|NM_129327.3| Arabidopsis thaliana kinase AT2G37710 mRNA, complete cds Length = 2287 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 89 attatcgtttgtatctttgaact 111 ||||||||||||||| ||||||| Sbjct: 517 attatcgtttgtatcattgaact 495
>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence Length = 179038 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 aactatgaaaaataagtga 153 ||||||||||||||||||| Sbjct: 78041 aactatgaaaaataagtga 78059
>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence Length = 206675 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tattatcgtttgtatcttt 106 ||||||||||||||||||| Sbjct: 14879 tattatcgtttgtatcttt 14897
>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence Length = 191104 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 atggagtctgtctctgtct 70 ||||||||||||||||||| Sbjct: 97131 atggagtctgtctctgtct 97113
>gb|AC121583.3| Mus musculus BAC clone RP23-259K16 from 13, complete sequence Length = 207129 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 121 cagcagctttggtgaactatgaa 143 |||||| |||||||||||||||| Sbjct: 79669 cagcagttttggtgaactatgaa 79647
>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence Length = 249008 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 142 aaaaataagtgagcccagg 160 ||||||||||||||||||| Sbjct: 157558 aaaaataagtgagcccagg 157576
>gb|AC161500.4| Mus musculus chromosome 7, clone RP23-145H5, complete sequence Length = 223833 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 gtgtcctccaatggagtct 60 ||||||||||||||||||| Sbjct: 165488 gtgtcctccaatggagtct 165470
>emb|Z81008.1|HS369O24 Human DNA sequence from clone RP3-369O24 on chromosome X Contains part of the ODZ1 gene for odz, odd Oz/ten-m homolog 1(Drosophila), complete sequence Length = 110180 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 gctttggtgaactatgaaa 144 ||||||||||||||||||| Sbjct: 32838 gctttggtgaactatgaaa 32856
>emb|AL450345.6| Human DNA sequence from clone RP11-300M24 on chromosome 6 Contains a novel gene, complete sequence Length = 183342 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 atggagtctgtctctgtct 70 ||||||||||||||||||| Sbjct: 52467 atggagtctgtctctgtct 52449
>emb|AL138759.20| Human DNA sequence from clone RP11-119K6 on chromosome 10 Contains the the 3' end of a novel gene (KIAA0608), the HELLS gene for helicase, lymphoid-specific (LSH, PASG, SMARCA6, FLJ10339), two novel genes, a C-terminal binding protein 2 (CTBP2) pseudogene and a CpG island, complete sequence Length = 193020 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 aatggagtctgtctctgtc 69 ||||||||||||||||||| Sbjct: 96385 aatggagtctgtctctgtc 96403
>gb|AC182473.3| Pan troglodytes BAC clone CH251-224P2 from chromosome 10, complete sequence Length = 192315 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 aatggagtctgtctctgtc 69 ||||||||||||||||||| Sbjct: 128608 aatggagtctgtctctgtc 128626
>emb|Z99114.2|BSUB0011 Bacillus subtilis complete genome (section 11 of 21): from 2014895 to 2207855 Length = 192961 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 tcgtttgtatctttgaact 111 ||||||||||||||||||| Sbjct: 185451 tcgtttgtatctttgaact 185469
>emb|X95909.1|ATLECGENE A.thaliana mRNA for receptor like protein kinase Length = 2242 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 89 attatcgtttgtatctttgaact 111 ||||||||||||||| ||||||| Sbjct: 497 attatcgtttgtatcattgaact 475
>gb|AY091070.1| Arabidopsis thaliana putative receptor protein kinase (At2g37710) mRNA, complete cds Length = 2277 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 89 attatcgtttgtatctttgaact 111 ||||||||||||||| ||||||| Sbjct: 517 attatcgtttgtatcattgaact 495
>gb|BC040569.1| Homo sapiens elongation factor Tu GTP binding domain containing 1, mRNA (cDNA clone IMAGE:5267393) Length = 2636 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 gaactatgaaaaataagtg 152 ||||||||||||||||||| Sbjct: 131 gaactatgaaaaataagtg 149
>gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, complete sequence Length = 170219 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 aatggagtctgtctctgtc 69 ||||||||||||||||||| Sbjct: 23387 aatggagtctgtctctgtc 23369
>gb|AC103870.3| Homo sapiens chromosome 11, clone RP11-702L21, complete sequence Length = 182598 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 gaactatgaaaaataagtg 152 ||||||||||||||||||| Sbjct: 31435 gaactatgaaaaataagtg 31417
>gb|AC107302.4| Homo sapiens 3 BAC RP11-564P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194234 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 atggagtctgtctctgtct 70 ||||||||||||||||||| Sbjct: 164578 atggagtctgtctctgtct 164596
>gb|AC114928.2| Homo sapiens chromosome 5 clone CTC-384G19, complete sequence Length = 45530 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 aatggagtctgtctctgtc 69 ||||||||||||||||||| Sbjct: 3429 aatggagtctgtctctgtc 3447
>gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence Length = 93845 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 89 attatcgtttgtatctttgaact 111 ||||||||||||||| ||||||| Sbjct: 72554 attatcgtttgtatcattgaact 72576
>gb|AC103873.2| Homo sapiens chromosome 11, clone RP11-768H8, complete sequence Length = 184860 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 gaactatgaaaaataagtg 152 ||||||||||||||||||| Sbjct: 8232 gaactatgaaaaataagtg 8250
>gb|AC099542.2| Homo sapiens chromosome 3 clone RP11-520D19, complete sequence Length = 178351 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 atggagtctgtctctgtct 70 ||||||||||||||||||| Sbjct: 146446 atggagtctgtctctgtct 146428
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 gagtctgtctctgtctacc 73 ||||||||||||||||||| Sbjct: 465469 gagtctgtctctgtctacc 465487
>gb|AC150730.3| Atelerix albiventris clone LB4-141D24, complete sequence Length = 136615 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 gagtctgtctctgtctacc 73 ||||||||||||||||||| Sbjct: 42523 gagtctgtctctgtctacc 42541
>gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, complete sequence Length = 143709 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 gaactatgaaaaataagtg 152 ||||||||||||||||||| Sbjct: 127252 gaactatgaaaaataagtg 127234
>emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 in linkage group 18, complete sequence Length = 188895 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 78 tgtgatgcagtattatcgtttgt 100 |||||||||||||||| |||||| Sbjct: 7507 tgtgatgcagtattatggtttgt 7529
>gb|AC138272.11| Mus musculus chromosome 7, clone RP23-91H13, complete sequence Length = 234237 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 gtgtcctccaatggagtct 60 ||||||||||||||||||| Sbjct: 135479 gtgtcctccaatggagtct 135497
>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the complete sequence Length = 264919 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 aactatgaaaaataagtga 153 ||||||||||||||||||| Sbjct: 260271 aactatgaaaaataagtga 260289
>gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome Length = 134416 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 tcgtttgtatctttgaact 111 ||||||||||||||||||| Sbjct: 85300 tcgtttgtatctttgaact 85282
>emb|AL773580.11| Mouse DNA sequence from clone RP23-26G3 on chromosome X, complete sequence Length = 210533 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 133 tgaactatgaaaaataagt 151 ||||||||||||||||||| Sbjct: 9765 tgaactatgaaaaataagt 9783
>emb|AL929473.7| Mouse DNA sequence from clone RP23-143P21 on chromosome 4, complete sequence Length = 59619 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 tttgtatctttgaacttct 114 ||||||||||||||||||| Sbjct: 31936 tttgtatctttgaacttct 31918 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,878,335 Number of Sequences: 3902068 Number of extensions: 1878335 Number of successful extensions: 199356 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 199190 Number of HSP's gapped (non-prelim): 163 length of query: 179 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 157 effective length of database: 17,147,199,772 effective search space: 2692110364204 effective search space used: 2692110364204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)