ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41l20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map near S2137, complete sequence Length = 197516 Score = 75.8 bits (38), Expect = 3e-11 Identities = 98/119 (82%) Strand = Plus / Minus Query: 18 gatgggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccg 77 ||||||||||||||||| || ||||| ||||||||| || || ||||| || || || Sbjct: 104954 gatgggcctgaggacgatgacgagaagcggaagtgggatgagctgctcgctctgccgcct 104895 Query: 78 cagggctcggaggtattcctggggggtctcccccgtgacaccaccgatnnggacctccg 136 |||||||| ||||| ||| | || ||||||||||| ||||||||||| ||||||||| Sbjct: 104894 cagggctccgaggtgttcatcggcggtctcccccgcgacaccaccgaggaggacctccg 104836
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 3e-11 Identities = 98/119 (82%) Strand = Plus / Minus Query: 18 gatgggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccg 77 ||||||||||||||||| || ||||| ||||||||| || || ||||| || || || Sbjct: 8024226 gatgggcctgaggacgatgacgagaagcggaagtgggatgagctgctcgctctgccgcct 8024167 Query: 78 cagggctcggaggtattcctggggggtctcccccgtgacaccaccgatnnggacctccg 136 |||||||| ||||| ||| | || ||||||||||| ||||||||||| ||||||||| Sbjct: 8024166 cagggctccgaggtgttcatcggcggtctcccccgcgacaccaccgaggaggacctccg 8024108
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 3e-11 Identities = 98/119 (82%) Strand = Plus / Minus Query: 18 gatgggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccg 77 ||||||||||||||||| || ||||| ||||||||| || || ||||| || || || Sbjct: 8094165 gatgggcctgaggacgatgacgagaagcggaagtgggatgagctgctcgctctgccgcct 8094106 Query: 78 cagggctcggaggtattcctggggggtctcccccgtgacaccaccgatnnggacctccg 136 |||||||| ||||| ||| | || ||||||||||| ||||||||||| ||||||||| Sbjct: 8094105 cagggctccgaggtgttcatcggcggtctcccccgcgacaccaccgaggaggacctccg 8094047
>ref|NM_194876.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein (OSJNBa0028C16.8), mRNA Length = 1419 Score = 58.0 bits (29), Expect = 8e-06 Identities = 85/104 (81%) Strand = Plus / Plus Query: 21 gggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccgcag 80 ||||| |||||||| || |||||| ||| ||||| || | ||||| || || || ||| Sbjct: 262 gggcccgaggacgaggaggagaagaggaaatgggacgagttgctcgctctgccgcctcag 321 Query: 81 ggctcggaggtattcctggggggtctcccccgtgacaccaccga 124 ||||||||||| ||| | || |||||||| |||||||||||||| Sbjct: 322 ggctcggaggtgttcatcggtggtctcccacgtgacaccaccga 365
>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence Length = 166757 Score = 58.0 bits (29), Expect = 8e-06 Identities = 85/104 (81%) Strand = Plus / Minus Query: 21 gggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccgcag 80 ||||| |||||||| || |||||| ||| ||||| || | ||||| || || || ||| Sbjct: 66827 gggcccgaggacgaggaggagaagaggaaatgggacgagttgctcgctctgccgcctcag 66768 Query: 81 ggctcggaggtattcctggggggtctcccccgtgacaccaccga 124 ||||||||||| ||| | || |||||||| |||||||||||||| Sbjct: 66767 ggctcggaggtgttcatcggtggtctcccacgtgacaccaccga 66724
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 8e-06 Identities = 85/104 (81%) Strand = Plus / Minus Query: 21 gggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccgcag 80 ||||| |||||||| || |||||| ||| ||||| || | ||||| || || || ||| Sbjct: 3097195 gggcccgaggacgaggaggagaagaggaaatgggacgagttgctcgctctgccgcctcag 3097136 Query: 81 ggctcggaggtattcctggggggtctcccccgtgacaccaccga 124 ||||||||||| ||| | || |||||||| |||||||||||||| Sbjct: 3097135 ggctcggaggtgttcatcggtggtctcccacgtgacaccaccga 3097092
>dbj|AK066347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065B13, full insert sequence Length = 3637 Score = 58.0 bits (29), Expect = 8e-06 Identities = 85/104 (81%) Strand = Plus / Plus Query: 21 gggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccgcag 80 ||||| |||||||| || |||||| ||| ||||| || | ||||| || || || ||| Sbjct: 527 gggcccgaggacgaggaggagaagaggaaatgggacgagttgctcgctctgccgcctcag 586 Query: 81 ggctcggaggtattcctggggggtctcccccgtgacaccaccga 124 ||||||||||| ||| | || |||||||| |||||||||||||| Sbjct: 587 ggctcggaggtgttcatcggtggtctcccacgtgacaccaccga 630
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 8e-06 Identities = 85/104 (81%) Strand = Plus / Minus Query: 21 gggcctgaggacgaagaanagaagatgaagtgggaggaactcctcgcactacccccgcag 80 ||||| |||||||| || |||||| ||| ||||| || | ||||| || || || ||| Sbjct: 3097116 gggcccgaggacgaggaggagaagaggaaatgggacgagttgctcgctctgccgcctcag 3097057 Query: 81 ggctcggaggtattcctggggggtctcccccgtgacaccaccga 124 ||||||||||| ||| | || |||||||| |||||||||||||| Sbjct: 3097056 ggctcggaggtgttcatcggtggtctcccacgtgacaccaccga 3097013
>gb|AY596295.1| Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence Length = 155300 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gtgggaggaactcctcgcac 69 |||||||||||||||||||| Sbjct: 117350 gtgggaggaactcctcgcac 117369
>emb|Y16952.3|AME16952 Amycolatopsis balhimycina biosynthetic gene cluster for balhimycin, strain DSM 5908 Length = 66669 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 ggaactcctcgcactaccc 74 ||||||||||||||||||| Sbjct: 30032 ggaactcctcgcactaccc 30050
>gb|AC010641.9| Homo sapiens chromosome 19 clone LLNLF19FOS22E10, complete sequence Length = 34877 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 gatggagaagggtgatggg 23 ||||||||||||||||||| Sbjct: 31464 gatggagaagggtgatggg 31482 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 gatggagaagggtgatggg 23 ||||||||||||||||||| Sbjct: 30174 gatggagaagggtgatggg 30192
>gb|AC008988.13| Homo sapiens chromosome 19 clone LLNLF-215A5, complete sequence Length = 34210 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 gatggagaagggtgatggg 23 ||||||||||||||||||| Sbjct: 6608 gatggagaagggtgatggg 6626 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 gatggagaagggtgatggg 23 ||||||||||||||||||| Sbjct: 5318 gatggagaagggtgatggg 5336
>emb|CT025579.12| Mouse DNA sequence from clone RP24-189A10 on chromosome 14, complete sequence Length = 173961 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 gagatggagaagggtgatg 21 ||||||||||||||||||| Sbjct: 4783 gagatggagaagggtgatg 4765
>gb|AC158396.2| Mus musculus BAC clone RP23-255D19 from chromosome 14, complete sequence Length = 188538 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 gagatggagaagggtgatg 21 ||||||||||||||||||| Sbjct: 176207 gagatggagaagggtgatg 176189
>emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chromosome 10, complete sequence Length = 220450 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 agaagatgaagtgggagga 58 ||||||||||||||||||| Sbjct: 140236 agaagatgaagtgggagga 140218
>emb|AL627432.26| Mouse DNA sequence from clone RP23-45I5 on chromosome X, complete sequence Length = 127007 Score = 38.2 bits (19), Expect = 7.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 agaanagaagatgaagtgggag 56 |||| ||||||||||||||||| Sbjct: 106960 agaagagaagatgaagtgggag 106939 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 837,384 Number of Sequences: 3902068 Number of extensions: 837384 Number of successful extensions: 68256 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68088 Number of HSP's gapped (non-prelim): 168 length of query: 148 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 127 effective length of database: 17,151,101,840 effective search space: 2178189933680 effective search space used: 2178189933680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
