>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
 Frame = -1

Query: 327  RYRCSDPRPYPSCCPPGW*APSLSPHPLSRQ-------LGP*SPASRSWAVCXXXXXXXX 169
            R RC  PRP+P        AP+ +PH    +       L P +P SRS            
Sbjct: 1211 RARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDLPPPAPTSRS------------ 1258

Query: 168  XXXXXXXXXXXSHQSSCRRHRPSFLLSSYVRYLHRRPH--RWGPRSP 34
                          SSC R  P+  L+   R+  R PH   WGP  P
Sbjct: 1259 ----------LEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGPPLP 1295

>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
 Frame = -1

Query: 327  RYRCSDPRPYPSCCPPGW*APSLSPHPLSRQLG-------P*SPASRSWAVCXXXXXXXX 169
            R RC  PRP+P        AP+ +PH    +         P +P SRS            
Sbjct: 1211 RARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDFPPPAPTSRS------------ 1258

Query: 168  XXXXXXXXXXXSHQSSCRRHRPSFLLSSYVRYLHRRPH--RWGPRSP 34
                          SSC R  P+  L+   R+  R PH   WGP  P
Sbjct: 1259 ----------LEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGPPLP 1295

>CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1|
          Length = 676

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +3

Query: 129 DVKKVAKTEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEVIEKVL 272
           D+KK+ +  P++  K+ ++ DD+    E +D+  PAD++    + K+L
Sbjct: 616 DIKKIEEQMPRRVKKRRKLDDDR--YEEYMDYVFPADDQAAASLTKIL 661

>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 86  EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQE 208
           E  +KE   R +E+  EEGG+   +EGR+ +E  GR   +E
Sbjct: 397 EGEKKEEEGREKEE--EEGGEKEDEEGREKEEEEGRGKEEE 435



 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 86  EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQERE 214
           E   +EGR + +E    EGG+   +EGR  +E  GR+  ++ E
Sbjct: 423 EKEEEEGRGKEEE----EGGEKEEEEGRGKEEVEGREEEEDEE 461

>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 690

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 89  DRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQERE 214
           +RR  GR R  +D  ++G QDR  +G Q ++G       +RE
Sbjct: 155 ERRSRGRRRAGDDDAQQG-QDRRSDGAQGEDGADADRRGDRE 195

>CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1|
          Length = 677

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 129 DVKKVAKTEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEVIEKVL 272
           D+ K+ +  P K  K+ ++ DD+    E LD+  PAD+     + ++L
Sbjct: 614 DIAKIERQMPSKVKKRRKLDDDR--YEEYLDYMFPADDESSAKLSQIL 659

>NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilament light|
           polypeptide) (NF-L)
          Length = 543

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 86  EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQ 205
           E+  +EG   ++E+  EEGGQ++ +EG   +EG G   A+
Sbjct: 481 EEEGEEGEEAKEEEAEEEGGQEKEEEG---EEGEGEAEAE 517

>ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein) (NMT)
          Length = 370

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +2

Query: 89  DRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQEREAGLHGPS 235
           DRR  GR  R       G  DR   GR  D+G   +  Q  + G  GPS
Sbjct: 306 DRRTGGRDHRDRQ--ASGHGDRRSSGRNRDDGRTGEREQGDQGGRRGPS 352

>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +2

Query: 77  LT*EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQEREA 217
           LT E RR+E     +E   E  G++  +EG   +EG GR+ A+E EA
Sbjct: 58  LTEEQRREEVEEEGEER--ERRGEEE-REGEGGEEGEGREEAEEEEA 101

>AAKG3_PIG (Q9MYP4) 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK|
           gamma-3 chain) (AMPK gamma3)
          Length = 514

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 98  KEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQE 208
           K  RW RQED  EEGG    +EG Q+   +   T QE
Sbjct: 81  KASRWTRQED-VEEGGPPGPREGPQS-RPVAESTGQE 115

>PURA_LEPIN (Q8F738) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 425

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 293 HAVPLVGKHLLYHLIPSLVSWVREVQLLVLGRFVVPDP 180
           H V + GK  ++HL+PS V  + +  + V+G  VV DP
Sbjct: 41  HTVVVHGKKYVFHLVPSGV--IYDQTICVIGNGVVLDP 76

>PURA_LEPIC (Q72PA7) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 425

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 293 HAVPLVGKHLLYHLIPSLVSWVREVQLLVLGRFVVPDP 180
           H V + GK  ++HL+PS V  + +  + V+G  VV DP
Sbjct: 41  HTVVVHGKKYVFHLVPSGV--IYDQTICVIGNGVVLDP 76

>LAMP1_HUMAN (P11279) Lysosome-associated membrane glycoprotein 1 precursor|
           (LAMP-1) (CD107a antigen)
          Length = 416

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 321 RCSDPRPYPSCCPPGW*APSLSPHPLS 241
           RC   RP P+  PP   +PS SP P S
Sbjct: 189 RCEQDRPSPTTAPPAPPSPSPSPVPKS 215

>CKLF5_HUMAN (Q96DZ9) CKLF-like MARVEL transmembrane domain-containing protein 5|
           (Chemokine-like factor superfamily member 5)
          Length = 223

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 309 PRPYPSCCPPGW*APSLSP 253
           P+P+P   PPGW  P+  P
Sbjct: 117 PQPWPGLTPPGWHTPAAVP 135

>ACHD_CHICK (P02717) Acetylcholine receptor protein, delta subunit precursor|
          Length = 513

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 293 HAVPLVGKHLLYHLIPSLVSWVREVQLLVLG-RFVVPDPH 177
           HA+PL+GK+LL+ ++  LV+ V  + ++VL   F  P  H
Sbjct: 303 HAIPLIGKYLLFIML--LVTAVVVICVVVLNFHFRTPSTH 340

>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)|
          Length = 5065

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 275  GKHLLYHLIPSLVSWVREVQLLVLGRFVVPDP 180
            G+  +  L+ S+  WV+E +LL   R +VP P
Sbjct: 1143 GRTTVPQLLASVQRWVQETKLLAQARVMVPGP 1174

>CWC15_ASHGO (Q750V7) Pre-mRNA-splicing factor CWC15|
          Length = 184

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 86  EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQEREA 217
           E+R + G   R  D C EG  + A EGR A  G G + +   ++
Sbjct: 53  EERERAGAETRTVD-CNEGTDELAGEGRSAGSGDGDEASSAEDS 95

>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid|
           hormone receptor-associated protein complex 240 kDa
           component-like)
          Length = 2210

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 171 KQMRVWDDKPPKNEKLDFTDP---ADERGDEVIE 263
           K+ ++W DK P+ + L F DP   + + GD + E
Sbjct: 678 KRFKIWQDKQPQLQPLHFLDPLPLSQQPGDSLGE 711

>NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilament light|
           polypeptide) (NF-L)
          Length = 555

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 134 EEGGQDRAQEGRQADEGLGRQTAQE 208
           EEG ++ ++EG++ +E  G +TA E
Sbjct: 497 EEGAKEESEEGKEGEEEEGEETAAE 521

>LMBTL_HUMAN (Q9Y468) Lethal(3)malignant brain tumor-like protein (L(3)mbt-like)|
           (L(3)mbt protein homolog) (H-l(3)mbt protein)
           (H-L(3)MBT) (L3MBTL1)
          Length = 772

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 300 YPSCCPPGW*APSLSPHPLSRQLGP*SPASRSWAVC 193
           +P   P GW   S + HPL   LGP  P+S S   C
Sbjct: 498 HPDIHPAGW--CSKTGHPLQPPLGPREPSSASPGGC 531

>FMRA_CALPA (Q01133) Antho-RFamide neuropeptides precursor [Contains:|
           Antho-RFamide]
          Length = 334

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 101 EGRWRRQED*CEEGGQDRAQEGRQADEG-LGRQTAQER 211
           +GR+ R+ED    G +++ + GR+ D+G  GR+  Q R
Sbjct: 126 QGRFGREEDQGRFGREEQGRFGREEDQGRFGREEDQGR 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,247,258
Number of Sequences: 219361
Number of extensions: 621211
Number of successful extensions: 2244
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2237
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)