ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41l18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472665.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 654 Score = 172 bits (87), Expect = 8e-40 Identities = 219/263 (83%) Strand = Plus / Plus Query: 270 ttgttgcgatacctatttacagaaagataagagcactggaagataaggtggagaagacgg 329 ||||||| ||||| || |||||||||||||||||| ||||||| | ||||||||||| | Sbjct: 344 ttgttgctatacccatctacagaaagataagagcattggaagacaccgtggagaagacag 403 Query: 330 cagaggtggcggtcgaggtaatcgacacggtggccgaagctgccgagaaagtcgccggcg 389 | ||||| || ||||||| ||||||||||||| || || | ||||| |||||||||| Sbjct: 404 cggaggtagcaatcgaggtggtcgacacggtggcggaggcgactgagaaggtcgccggcg 463 Query: 390 aggtggccgaggcgtttcccgaaaatgaagggctcaaggaggcagcatccaggatcaaga 449 || ||||||| || ||||||| || ||| |||||||||| || |||| ||| |||| Sbjct: 464 agctggccgacgcttttcccggcaacgaaaatctcaaggaggttgcctccaagattaaga 523 Query: 450 ccgtcgccgatgcgatcgaggaggacgccgagaaagccgaggcactaatccataaggttg 509 |||| ||||||| ||| ||||| || ||||||||||||||||| |||||||| ||||||| Sbjct: 524 ccgtagccgatgtgatagaggatgatgccgagaaagccgaggccctaatccagaaggttg 583 Query: 510 atgagataacgaaaaaggtggat 532 ||||||||| |||| || ||||| Sbjct: 584 atgagataaagaaagagttggat 606 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 210 gaggaaatctccctgtgcccaacatgccttcatg 243 ||||||||||||| || |||| |||||||||||| Sbjct: 221 gaggaaatctcccagtacccagcatgccttcatg 254
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 111 bits (56), Expect = 3e-21 Identities = 158/192 (82%) Strand = Plus / Plus Query: 317 gtggagaagacggcagaggtggcggtcgaggtaatcgacacggtggccgaagctgccgag 376 ||||||||||| || ||||| || ||||||| ||||||||||||| || || | ||| Sbjct: 27264 gtggagaagacagcggaggtagcaatcgaggtggtcgacacggtggcggaggcgactgag 27323 Query: 377 aaagtcgccggcgaggtggccgaggcgtttcccgaaaatgaagggctcaaggaggcagca 436 || |||||||||||| ||||||| || ||||||| || ||| |||||||||| || Sbjct: 27324 aaggtcgccggcgagctggccgacgcttttcccggcaacgaaaatctcaaggaggttgcc 27383 Query: 437 tccaggatcaagaccgtcgccgatgcgatcgaggaggacgccgagaaagccgaggcacta 496 |||| ||| |||||||| ||||||| ||| ||||| || ||||||||||||||||| ||| Sbjct: 27384 tccaagattaagaccgtagccgatgtgatagaggatgatgccgagaaagccgaggcccta 27443 Query: 497 atccataaggtt 508 ||||| |||||| Sbjct: 27444 atccagaaggtt 27455 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 270 ttgttgcgatacctatttacagaaagataagagcactggaag 311 ||||||| ||||| || |||||||||||||||||| |||||| Sbjct: 27115 ttgttgctatacccatctacagaaagataagagcattggaag 27156 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 210 gaggaaatctccctgtgcccaacatgccttcatgg 244 ||||||||||||| || |||| ||||||||||||| Sbjct: 26951 gaggaaatctcccagtacccagcatgccttcatgg 26985
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 3e-21 Identities = 158/192 (82%) Strand = Plus / Plus Query: 317 gtggagaagacggcagaggtggcggtcgaggtaatcgacacggtggccgaagctgccgag 376 ||||||||||| || ||||| || ||||||| ||||||||||||| || || | ||| Sbjct: 22423509 gtggagaagacagcggaggtagcaatcgaggtggtcgacacggtggcggaggcgactgag 22423568 Query: 377 aaagtcgccggcgaggtggccgaggcgtttcccgaaaatgaagggctcaaggaggcagca 436 || |||||||||||| ||||||| || ||||||| || ||| |||||||||| || Sbjct: 22423569 aaggtcgccggcgagctggccgacgcttttcccggcaacgaaaatctcaaggaggttgcc 22423628 Query: 437 tccaggatcaagaccgtcgccgatgcgatcgaggaggacgccgagaaagccgaggcacta 496 |||| ||| |||||||| ||||||| ||| ||||| || ||||||||||||||||| ||| Sbjct: 22423629 tccaagattaagaccgtagccgatgtgatagaggatgatgccgagaaagccgaggcccta 22423688 Query: 497 atccataaggtt 508 ||||| |||||| Sbjct: 22423689 atccagaaggtt 22423700 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 270 ttgttgcgatacctatttacagaaagataagagcactggaag 311 ||||||| ||||| || |||||||||||||||||| |||||| Sbjct: 22423360 ttgttgctatacccatctacagaaagataagagcattggaag 22423401 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 210 gaggaaatctccctgtgcccaacatgccttcatgg 244 ||||||||||||| || |||| ||||||||||||| Sbjct: 22423196 gaggaaatctcccagtacccagcatgccttcatgg 22423230 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 13292820 gaaggagaagtgagaaagaggaggag 13292795
>gb|AY106821.1| Zea mays PCO092737 mRNA sequence Length = 933 Score = 107 bits (54), Expect = 4e-20 Identities = 201/250 (80%) Strand = Plus / Plus Query: 285 tttacagaaagataagagcactggaagataaggtggagaagacggcagaggtggcggtcg 344 ||||||||| | | |||||| | |||||||| || ||||||||||| |||| |||| ||| Sbjct: 415 tttacagaaggttcagagcattagaagataacgtagagaagacggcggaggcggcgatcg 474 Query: 345 aggtaatcgacacggtggccgaagctgccgagaaagtcgccggcgaggtggccgaggcgt 404 |||| |||||| ||||||| || || ||||||| ||||||| |||||| || | |||| Sbjct: 475 aggtgatcgactcggtggcggaggcgaccgagaaggtcgccgacgaggttgcgcaagcgt 534 Query: 405 ttcccgaaaatgaagggctcaaggaggcagcatccaggatcaagaccgtcgccgatgcga 464 | |||| | |||| |||||| ||||||| |||| ||| ||||| |||| |||| || Sbjct: 535 tccccggcagtgaaactctcaagcaggcagcctccaagattaagacgatcgcggatgaga 594 Query: 465 tcgaggaggacgccgagaaagccgaggcactaatccataaggttgatgagataacgaaaa 524 ||||||| || ||||| ||||| ||||| || || | |||||||| ||||||| |||| Sbjct: 595 tcgaggaagatgccgacaaagctgaggccctgattgagaaggttgacgagataaagaaag 654 Query: 525 aggtggattc 534 |||||||||| Sbjct: 655 aggtggattc 664
>gb|AC107230.8| Mus musculus chromosome 18, clone RP23-238L23, complete sequence Length = 192286 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 564 tgaaggagaagggagaaagaggaggagt 591 ||||||||||||| |||||||||||||| Sbjct: 100352 tgaaggagaagggggaaagaggaggagt 100325
>gb|AC098720.2| Mus musculus BAC clone RP23-2N16 from 5, complete sequence Length = 214995 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 566 aaggagaagggagaaagaggagga 589 |||||||||||||||||||||||| Sbjct: 77995 aaggagaagggagaaagaggagga 77972
>gb|AC109179.7| Mus musculus chromosome 18, clone RP23-382N7, complete sequence Length = 241644 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 564 tgaaggagaagggagaaagaggaggagt 591 ||||||||||||| |||||||||||||| Sbjct: 6167 tgaaggagaagggggaaagaggaggagt 6140
>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence Length = 198281 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 566 aaggagaagggagaaagaggagga 589 |||||||||||||||||||||||| Sbjct: 15604 aaggagaagggagaaagaggagga 15627
>gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome 6, complete sequence Length = 224158 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 |||||||||||||||||||||||| Sbjct: 174750 aggagaagggagaaagaggaggag 174727
>gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complete sequence Length = 209846 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 567 aggagaagggagaaagaggaggag 590 |||||||||||||||||||||||| Sbjct: 149792 aggagaagggagaaagaggaggag 149815
>emb|AM180150.1| Kerivoula papillosa microsatellite DNA, locus Kpa33, clone KpaN1f09A Length = 606 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 563 atgaaggagaagggagaaagaggagga 589 ||||||||||||||||| ||||||||| Sbjct: 242 atgaaggagaagggagagagaggagga 268
>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0096A19 map near 50283S, complete sequence Length = 139969 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 90854 gaaggagaagtgagaaagaggaggag 90829 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 54369 gaaggagaagtgagaaagaggaggag 54344
>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete sequence Length = 213720 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 571 gaagggagaaagaggaggagtcgtag 596 |||||||||||||||||||| ||||| Sbjct: 54643 gaagggagaaagaggaggagacgtag 54618
>gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030I07, complete sequence Length = 122733 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 50185 gaaggagaagtgagaaagaggaggag 50160
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 ccgtcgccgatgcgatcgagga 471 |||||||||||||||||||||| Sbjct: 70023 ccgtcgccgatgcgatcgagga 70044
>gb|AC135254.2| Homo sapiens X BAC RP11-98L4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62121 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||||||||| ||||||||| Sbjct: 35544 gaaggagaagggagaaggaggaggag 35569
>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete sequence Length = 185664 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 571 gaagggagaaagaggaggagtcgtag 596 |||||||||||||||||||| ||||| Sbjct: 29416 gaagggagaaagaggaggagacgtag 29441
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence Length = 214913 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 571 gaagggagaaagaggaggagtcgtag 596 |||||||||||||||||||| ||||| Sbjct: 16842 gaagggagaaagaggaggagacgtag 16867
>emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on chromosome 6 Contains two CpG islands, complete sequence Length = 124506 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 atcaggacagcaacacaaatcc 176 |||||||||||||||||||||| Sbjct: 85026 atcaggacagcaacacaaatcc 85005
>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0023F01, complete sequence Length = 145009 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 1793 gaaggagaagtgagaaagaggaggag 1818
>tpg|BK000817.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M228, complete sequence Length = 1295 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 391 gaaggagaagtgagaaagaggaggag 366
>tpg|BK000313.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M33, complete sequence Length = 1233 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 394 gaaggagaagtgagaaagaggaggag 369
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 26587927 gaaggagaagtgagaaagaggaggag 26587902 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 13853295 gaaggagaagtgagaaagaggaggag 13853270 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 13816810 gaaggagaagtgagaaagaggaggag 13816785
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 7619528 gaaggagaagtgagaaagaggaggag 7619503 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 atggcggtcctcatatcttccatt 25 ||||||||||| |||||||||||| Sbjct: 36369280 atggcggtcctaatatcttccatt 36369303
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 30104 gaaggagaagtgagaaagaggaggag 30079
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 168320 gaaggagaagtgagaaagaggaggag 168295
>emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 in linkage group 10, complete sequence Length = 167229 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 62820 gaaggagaagagagaaagaggaggag 62795
>gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosome 7, complete sequence Length = 228892 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 569 gagaagggagaaagaggaggag 590 |||||||||||||||||||||| Sbjct: 172137 gagaagggagaaagaggaggag 172116
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 26913191 gaaggagaagtgagaaagaggaggag 26913166 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 13935297 gaaggagaagtgagaaagaggaggag 13935272 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 13898812 gaaggagaagtgagaaagaggaggag 13898787
>emb|AL662966.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035B13, complete sequence Length = 145234 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 64919 gaaggagaagtgagaaagaggaggag 64894
>emb|CR394538.6| Zebrafish DNA sequence from clone DKEY-189I22 in linkage group 10, complete sequence Length = 155394 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||| ||||||||||||||| Sbjct: 70180 gaaggagaagagagaaagaggaggag 70205
>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence Length = 212016 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 569 gagaagggagaaagaggaggag 590 |||||||||||||||||||||| Sbjct: 139099 gagaagggagaaagaggaggag 139120
>emb|AL731703.16| Mouse DNA sequence from clone RP23-100O16 on chromosome 2, complete sequence Length = 187541 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 569 gagaagggagaaagaggaggag 590 |||||||||||||||||||||| Sbjct: 54001 gagaagggagaaagaggaggag 54022
>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence Length = 187685 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||||||||| ||||||||| Sbjct: 128985 gaaggagaagggagaaggaggaggag 128960
>gb|AC135252.2| Homo sapiens X BAC RP11-196I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62101 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggaggag 590 |||||||||||||||| ||||||||| Sbjct: 26582 gaaggagaagggagaaggaggaggag 26557
>emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on chromosome X Contains the DXYS155E gene for DNA segment on chromosome X and Y (unique) 155 expressed sequence (XE7, XE7Y), the ASMT gene for acetylserotonin O-methyltransferase (ASMTY, HIOMT, HIOMTY), three novel genes and three CpG islands, complete sequence Length = 189825 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 566 aaggagaagggagaaagaggaggag 590 |||||| |||||||||||||||||| Sbjct: 153265 aaggaggagggagaaagaggaggag 153241 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 ||||| |||||||||||||||||| Sbjct: 153248 aggaggagggagaaagaggaggag 153225
>emb|AL611922.7| Human DNA sequence from clone RP11-633N4 on chromosome 9, complete sequence Length = 176612 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggagga 589 ||||||||||| ||||||||||||| Sbjct: 167301 gaaggagaaggaagaaagaggagga 167277
>gb|AC016942.13| Homo sapiens 3 BAC RP11-536K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152014 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 tgttgcgatacctatttacag 291 ||||||||||||||||||||| Sbjct: 15977 tgttgcgatacctatttacag 15957
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 cagagatttctcggcatcgaa 74 ||||||||||||||||||||| Sbjct: 3023997 cagagatttctcggcatcgaa 3024017
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 381 tcgccggcgaggtggccgaggcgtt 405 ||||||| ||||||||||||||||| Sbjct: 2014 tcgccggggaggtggccgaggcgtt 1990
>emb|AL732632.4| Zebrafish DNA sequence from clone CH211-140K5 in linkage group 14 Contains two novel retroelements, the 5' part of a novel gene similar to GRIN3A (ionotropic glutamate receptor, N-methyl-D-aspartate 3A (GRIN3A) and four CpG islands, complete sequence Length = 159482 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagaggagga 589 |||||||||| |||||||||||||| Sbjct: 7069 gaaggagaagagagaaagaggagga 7045
>gb|AE010214.1| Pyrococcus furiosus DSM 3638, section 89 of 173 of the complete genome Length = 11615 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 503 aaggttgatgagataacgaaaaagg 527 |||||||||||||||| |||||||| Sbjct: 10205 aaggttgatgagataatgaaaaagg 10181
>gb|AC154732.3| Mus musculus BAC clone RP24-380F18 from chromosome 12, complete sequence Length = 172458 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 566 aaggagaagggagaaagaggaggag 590 |||||| |||||||||||||||||| Sbjct: 152348 aaggaggagggagaaagaggaggag 152324
>gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, complete sequence Length = 147390 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 gaaggagaagggagaaagagg 585 ||||||||||||||||||||| Sbjct: 17046 gaaggagaagggagaaagagg 17066
>gb|AC157689.2| Xenopus tropicalis clone ISB1-171O22, complete sequence Length = 80070 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 aaggagaagggagaaagagga 586 ||||||||||||||||||||| Sbjct: 41583 aaggagaagggagaaagagga 41563
>emb|CT030142.10| Mouse DNA sequence from clone RP23-422H22 on chromosome 12, complete sequence Length = 203796 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 566 aaggagaagggagaaagaggaggag 590 |||||| |||||||||||||||||| Sbjct: 118375 aaggaggagggagaaagaggaggag 118399
>gb|AF393505.1| Mus musculus potential meiotic DNA repair locus Length = 17157 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 agaagggagaaagaggagga 589 |||||||||||||||||||| Sbjct: 2939 agaagggagaaagaggagga 2920
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 567 aggagaagggagaaagaggaggag 590 |||||||| ||||||||||||||| Sbjct: 116099 aggagaagtgagaaagaggaggag 116122
>gb|AC182722.2| Populus trichocarpa clone Pop1-92L17, complete sequence Length = 97881 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 agaagggagaaagaggagga 589 |||||||||||||||||||| Sbjct: 84748 agaagggagaaagaggagga 84767
>gb|AC132322.3| Mus musculus BAC clone RP24-262F3 from chromosome 13, complete sequence Length = 155179 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 gaagggagaaagaggaggag 590 |||||||||||||||||||| Sbjct: 120775 gaagggagaaagaggaggag 120756 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 gaagggagaaagaggaggag 590 |||||||||||||||||||| Sbjct: 120530 gaagggagaaagaggaggag 120511
>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 567 aggagaagggagaaagaggaggag 590 |||||||||||| ||||||||||| Sbjct: 94910 aggagaagggaggaagaggaggag 94933
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 |||||||| ||||||||||||||| Sbjct: 17447644 aggagaagtgagaaagaggaggag 17447621
>gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome 3, complete sequence Length = 218929 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 cttccattgcttccaaagccttgg 41 |||| ||||||||||||||||||| Sbjct: 209976 cttctattgcttccaaagccttgg 209953
>gb|AC131178.11| Mus musculus chromosome 15, clone RP23-376I10, complete sequence Length = 170753 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 |||||||||||| ||||||||||| Sbjct: 93421 aggagaagggaggaagaggaggag 93398
>emb|CR931798.8| Mouse DNA sequence from clone RP23-89A4 on chromosome 4, complete sequence Length = 83980 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 |||| ||||||||||||||||||| Sbjct: 64784 aggaaaagggagaaagaggaggag 64761
>gb|AC102566.9| Mus musculus chromosome 9, clone RP23-223D10, complete sequence Length = 253343 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ggaagataaggtggagaaga 326 |||||||||||||||||||| Sbjct: 83080 ggaagataaggtggagaaga 83061
>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence Length = 208499 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 gagaagggagaaagaggagg 588 |||||||||||||||||||| Sbjct: 85619 gagaagggagaaagaggagg 85638
>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence Length = 257003 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 agaagggagaaagaggagga 589 |||||||||||||||||||| Sbjct: 198072 agaagggagaaagaggagga 198053
>gb|AC116323.6| Mus musculus BAC clone RP23-281F3 from 8, complete sequence Length = 182204 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 agaagggagaaagaggagga 589 |||||||||||||||||||| Sbjct: 139576 agaagggagaaagaggagga 139595
>emb|CR683700.2|CNS0FQHS Tetraodon nigroviridis full-length cDNA Length = 858 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 gaggaggacgccgagaaagc 486 |||||||||||||||||||| Sbjct: 371 gaggaggacgccgagaaagc 390
>emb|CR662625.2|CNS0FA93 Tetraodon nigroviridis full-length cDNA Length = 598 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 gaggaggacgccgagaaagc 486 |||||||||||||||||||| Sbjct: 111 gaggaggacgccgagaaagc 130
>emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chromosome 1 Contains the 5' end of a novel pseudogene and a guanylate binding protein pseudogene, complete sequence Length = 68235 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 566 aaggagaagggagaaagaggagga 589 |||||||||| ||||||||||||| Sbjct: 62672 aaggagaaggaagaaagaggagga 62649
>emb|AL365192.22| Human DNA sequence from clone RP3-421H19 on chromosome 6 Contains the 5' part of a novel protein similar to ribosomal protein L14 (L14p/L23e), a novel gene, the CAPN11 gene for calpain 11 and one CpG island, complete sequence Length = 89351 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagag 584 |||||||||||||||||||| Sbjct: 52929 gaaggagaagggagaaagag 52910
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cgaagctgccgagaaagtcgccggcgag 391 |||||| |||||||||||||||| |||| Sbjct: 1717781 cgaagccgccgagaaagtcgccgccgag 1717808
>emb|AL021326.1|HS124C6 Human DNA sequence from clone RP1-124C6 on chromosome 6q21 Contains a putative novel gene, complete sequence Length = 103567 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 aaggagaagggagaaagagg 585 |||||||||||||||||||| Sbjct: 78974 aaggagaagggagaaagagg 78955
>emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chromosome 11 Contains the Pank3 gene for pantothenate kinase 3, a pseudogene similar to part of ribosomal protein L7a (Rpl7a), a pseudogene similar to part of fibrillarin (Fbl), the Rars gene for arginyl-tRNA synthetase, the 3' end of the gene for a novel protein similar to human KIBRA and two CpG islands, complete sequence Length = 181103 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 |||||| ||||||||||||||||| Sbjct: 81998 aggagaggggagaaagaggaggag 81975
>gb|AY115108.1| Mus musculus glucocerebrosidase precursor (Gba) and metaxin genes, complete cds; and thrombospondin 3 gene, partial cds Length = 16507 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 cttccattgcttccaaagccttgg 41 |||| ||||||||||||||||||| Sbjct: 15376 cttctattgcttccaaagccttgg 15353
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 gtcgccggcgaggtggccgaggcg 403 |||||||||||| ||||||||||| Sbjct: 4036798 gtcgccggcgagttggccgaggcg 4036821
>gb|AC027141.7| Homo sapiens chromosome 18, clone RP11-29E21, complete sequence Length = 146286 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 aagggagaaagaggaggagt 591 |||||||||||||||||||| Sbjct: 80471 aagggagaaagaggaggagt 80490
>dbj|AK147184.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920195H12 product:unclassifiable, full insert sequence Length = 2488 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 cttccattgcttccaaagccttgg 41 |||| ||||||||||||||||||| Sbjct: 2137 cttctattgcttccaaagccttgg 2114
>gb|AC154358.2| Mus musculus BAC clone RP23-173M16 from chromosome 13, complete sequence Length = 193594 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 gaaggagaagggagaaagag 584 |||||||||||||||||||| Sbjct: 135485 gaaggagaagggagaaagag 135466
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 cgccggcgaggtggccgagg 401 |||||||||||||||||||| Sbjct: 20998552 cgccggcgaggtggccgagg 20998533
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 |||||||| ||||||||||||||| Sbjct: 17441185 aggagaagtgagaaagaggaggag 17441162
>gb|AC080014.13| Homo sapiens 3 BAC RP11-301G23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163111 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 gagaagggagaaagaggagg 588 |||||||||||||||||||| Sbjct: 86864 gagaagggagaaagaggagg 86883
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 gtcgccggcgaggtggccgaggcg 403 ||||||||||||||||||| |||| Sbjct: 1834701 gtcgccggcgaggtggccgtggcg 1834724
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 atggcggtcctcatatcttccatt 25 ||||||||||| |||||||||||| Sbjct: 119157 atggcggtcctaatatcttccatt 119180
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0005H10 Length = 142885 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 atggcggtcctcatatcttccatt 25 ||||||||||| |||||||||||| Sbjct: 21119 atggcggtcctaatatcttccatt 21142
>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_A12 Length = 152269 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 cgccggcgaggtggccgagg 401 |||||||||||||||||||| Sbjct: 41851 cgccggcgaggtggccgagg 41832
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tggtcgttggtgccgtgctt 271 |||||||||||||||||||| Sbjct: 274175 tggtcgttggtgccgtgctt 274156
>gb|AC104632.10| Mus musculus strain C57BL/6J clone rp23-368d24 map 3, complete sequence Length = 210499 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 cttccattgcttccaaagccttgg 41 |||| ||||||||||||||||||| Sbjct: 192852 cttctattgcttccaaagccttgg 192875
>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) Length = 896449 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 ataacgaaaaaggtggattc 534 |||||||||||||||||||| Sbjct: 236965 ataacgaaaaaggtggattc 236946
>gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome 9, complete sequence Length = 164119 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 567 aggagaagggagaaagaggaggag 590 |||||||||||||| ||||||||| Sbjct: 131604 aggagaagggagaaggaggaggag 131627 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 567 aggagaagggagaaagaggaggag 590 |||||||||||||| ||||||||| Sbjct: 131573 aggagaagggagaaggaggaggag 131596
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ccggcgaggtggccgaggcg 403 |||||||||||||||||||| Sbjct: 3249138 ccggcgaggtggccgaggcg 3249119
>gb|AC174767.1| Gasterosteus aculeatus chromosome VMRC28-49C03, complete sequence Length = 136807 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gaaatctccctgtgcccaac 232 |||||||||||||||||||| Sbjct: 46254 gaaatctccctgtgcccaac 46235
>emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, complete sequence Length = 137155 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 aggagaagggagaaagaggaggag 590 ||||| |||||||||||||||||| Sbjct: 13250 aggaggagggagaaagaggaggag 13227
>gb|AC132327.3| Mus musculus BAC clone RP24-194O6 from 3, complete sequence Length = 174267 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 cttccattgcttccaaagccttgg 41 |||| ||||||||||||||||||| Sbjct: 73583 cttctattgcttccaaagccttgg 73560
>emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chromosome 1, complete sequence Length = 101854 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 566 aaggagaagggagaaagaggagga 589 |||||||||| ||||||||||||| Sbjct: 47294 aaggagaaggaagaaagaggagga 47317
>emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chromosome X, complete sequence Length = 231530 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 567 aggagaagggagaaagaggaggag 590 ||||||||| |||||||||||||| Sbjct: 176280 aggagaaggaagaaagaggaggag 176303 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,649,300 Number of Sequences: 3902068 Number of extensions: 4649300 Number of successful extensions: 99209 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98085 Number of HSP's gapped (non-prelim): 1121 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
