ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41j19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 242 bits (122), Expect = 5e-61 Identities = 197/222 (88%) Strand = Plus / Plus Query: 4 tgggagcagatcagcagcaatattgtgcttggtgcatataaccagatcccagaatggcag 63 |||||||||||||| | || ||||||| ||||| || |||||||||||||||||||| Sbjct: 24490553 tgggagcagatcagtggaaaccttgtgctcggtgcgtacaaccagatcccagaatggcaa 24490612 Query: 64 ctcaagttagggccaagggaccgaggaccagtccttgttatacttgatgatgtgtggtct 123 |||||||| |||||||||||| |||||| || |||||||| ||||||||||| |||||| Sbjct: 24490613 ctcaagttggggccaagggacaaaggacctgttcttgttatccttgatgatgtctggtct 24490672 Query: 124 ctctcacagctcgaggagctcgtcttcaagttccctggctgcaagactcttgtcgtatca 183 ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||| Sbjct: 24490673 ctctcacagctagaggagctcatcttcaagttccctgggtgcaagacacttgtagtatca 24490732 Query: 184 aggttgaagttccccacgttagtctcccggacttacgaaatg 225 ||||| ||||||||| |||| ||| ||||||||||||||||| Sbjct: 24490733 aggttcaagttcccctcgttggtcacccggacttacgaaatg 24490774
>dbj|AK119516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C04, full insert sequence Length = 1937 Score = 242 bits (122), Expect = 5e-61 Identities = 197/222 (88%) Strand = Plus / Plus Query: 4 tgggagcagatcagcagcaatattgtgcttggtgcatataaccagatcccagaatggcag 63 |||||||||||||| | || ||||||| ||||| || |||||||||||||||||||| Sbjct: 120 tgggagcagatcagtggaaaccttgtgctcggtgcgtacaaccagatcccagaatggcaa 179 Query: 64 ctcaagttagggccaagggaccgaggaccagtccttgttatacttgatgatgtgtggtct 123 |||||||| |||||||||||| |||||| || |||||||| ||||||||||| |||||| Sbjct: 180 ctcaagttggggccaagggacaaaggacctgttcttgttatccttgatgatgtctggtct 239 Query: 124 ctctcacagctcgaggagctcgtcttcaagttccctggctgcaagactcttgtcgtatca 183 ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||| Sbjct: 240 ctctcacagctagaggagctcatcttcaagttccctgggtgcaagacacttgtagtatca 299 Query: 184 aggttgaagttccccacgttagtctcccggacttacgaaatg 225 ||||| ||||||||| |||| ||| ||||||||||||||||| Sbjct: 300 aggttcaagttcccctcgttggtcacccggacttacgaaatg 341
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 242 bits (122), Expect = 5e-61 Identities = 197/222 (88%) Strand = Plus / Plus Query: 4 tgggagcagatcagcagcaatattgtgcttggtgcatataaccagatcccagaatggcag 63 |||||||||||||| | || ||||||| ||||| || |||||||||||||||||||| Sbjct: 24418759 tgggagcagatcagtggaaaccttgtgctcggtgcgtacaaccagatcccagaatggcaa 24418818 Query: 64 ctcaagttagggccaagggaccgaggaccagtccttgttatacttgatgatgtgtggtct 123 |||||||| |||||||||||| |||||| || |||||||| ||||||||||| |||||| Sbjct: 24418819 ctcaagttggggccaagggacaaaggacctgttcttgttatccttgatgatgtctggtct 24418878 Query: 124 ctctcacagctcgaggagctcgtcttcaagttccctggctgcaagactcttgtcgtatca 183 ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||| Sbjct: 24418879 ctctcacagctagaggagctcatcttcaagttccctgggtgcaagacacttgtagtatca 24418938 Query: 184 aggttgaagttccccacgttagtctcccggacttacgaaatg 225 ||||| ||||||||| |||| ||| ||||||||||||||||| Sbjct: 24418939 aggttcaagttcccctcgttggtcacccggacttacgaaatg 24418980
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 242 bits (122), Expect = 5e-61 Identities = 197/222 (88%) Strand = Plus / Plus Query: 4 tgggagcagatcagcagcaatattgtgcttggtgcatataaccagatcccagaatggcag 63 |||||||||||||| | || ||||||| ||||| || |||||||||||||||||||| Sbjct: 61584 tgggagcagatcagtggaaaccttgtgctcggtgcgtacaaccagatcccagaatggcaa 61643 Query: 64 ctcaagttagggccaagggaccgaggaccagtccttgttatacttgatgatgtgtggtct 123 |||||||| |||||||||||| |||||| || |||||||| ||||||||||| |||||| Sbjct: 61644 ctcaagttggggccaagggacaaaggacctgttcttgttatccttgatgatgtctggtct 61703 Query: 124 ctctcacagctcgaggagctcgtcttcaagttccctggctgcaagactcttgtcgtatca 183 ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||| Sbjct: 61704 ctctcacagctagaggagctcatcttcaagttccctgggtgcaagacacttgtagtatca 61763 Query: 184 aggttgaagttccccacgttagtctcccggacttacgaaatg 225 ||||| ||||||||| |||| ||| ||||||||||||||||| Sbjct: 61764 aggttcaagttcccctcgttggtcacccggacttacgaaatg 61805
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 236 bits (119), Expect = 3e-59 Identities = 182/203 (89%) Strand = Plus / Plus Query: 1 ctgtgggagcagatcagcagcaatattgtgcttggtgcatataaccagatcccagaatgg 60 |||||||||||||| ||| |||| | |||||||||||||| |||||||||||||||||| Sbjct: 23755 ctgtgggagcagataagcggcaacctcgtgcttggtgcatacaaccagatcccagaatgg 23814 Query: 61 cagctcaagttagggccaagggaccgaggaccagtccttgttatacttgatgatgtgtgg 120 |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||| ||| Sbjct: 23815 cagctcaagttaggaccaagggaccgaggacctgtccttgtaatccttgatgatgtttgg 23874 Query: 121 tctctctcacagctcgaggagctcgtcttcaagttccctggctgcaagactcttgtcgta 180 |||||| ||||||| ||||||||| | |||||||||||||| ||||||||||| || ||| Sbjct: 23875 tctctcccacagcttgaggagctcattttcaagttccctgggtgcaagactctagttgta 23934 Query: 181 tcaaggttgaagttccccacgtt 203 || || || |||||||||||||| Sbjct: 23935 tcgagattcaagttccccacgtt 23957
>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence Length = 125927 Score = 236 bits (119), Expect = 3e-59 Identities = 182/203 (89%) Strand = Plus / Plus Query: 1 ctgtgggagcagatcagcagcaatattgtgcttggtgcatataaccagatcccagaatgg 60 |||||||||||||| ||| |||| | |||||||||||||| |||||||||||||||||| Sbjct: 90400 ctgtgggagcagataagcggcaacctcgtgcttggtgcatacaaccagatcccagaatgg 90459 Query: 61 cagctcaagttagggccaagggaccgaggaccagtccttgttatacttgatgatgtgtgg 120 |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||| ||| Sbjct: 90460 cagctcaagttaggaccaagggaccgaggacctgtccttgtaatccttgatgatgtttgg 90519 Query: 121 tctctctcacagctcgaggagctcgtcttcaagttccctggctgcaagactcttgtcgta 180 |||||| ||||||| ||||||||| | |||||||||||||| ||||||||||| || ||| Sbjct: 90520 tctctcccacagcttgaggagctcattttcaagttccctgggtgcaagactctagttgta 90579 Query: 181 tcaaggttgaagttccccacgtt 203 || || || |||||||||||||| Sbjct: 90580 tcgagattcaagttccccacgtt 90602
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 236 bits (119), Expect = 3e-59 Identities = 182/203 (89%) Strand = Plus / Plus Query: 1 ctgtgggagcagatcagcagcaatattgtgcttggtgcatataaccagatcccagaatgg 60 |||||||||||||| ||| |||| | |||||||||||||| |||||||||||||||||| Sbjct: 278988 ctgtgggagcagataagcggcaacctcgtgcttggtgcatacaaccagatcccagaatgg 279047 Query: 61 cagctcaagttagggccaagggaccgaggaccagtccttgttatacttgatgatgtgtgg 120 |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||| ||| Sbjct: 279048 cagctcaagttaggaccaagggaccgaggacctgtccttgtaatccttgatgatgtttgg 279107 Query: 121 tctctctcacagctcgaggagctcgtcttcaagttccctggctgcaagactcttgtcgta 180 |||||| ||||||| ||||||||| | |||||||||||||| ||||||||||| || ||| Sbjct: 279108 tctctcccacagcttgaggagctcattttcaagttccctgggtgcaagactctagttgta 279167 Query: 181 tcaaggttgaagttccccacgtt 203 || || || |||||||||||||| Sbjct: 279168 tcgagattcaagttccccacgtt 279190
>gb|AC159296.2| Mus musculus BAC clone RP23-278O17 from chromosome 12, complete sequence Length = 194140 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 gagcagatcagcagcaatatt 27 ||||||||||||||||||||| Sbjct: 139387 gagcagatcagcagcaatatt 139367
>gb|AC133174.5| Mus musculus BAC clone RP24-314N20 from 12, complete sequence Length = 208222 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 gagcagatcagcagcaatatt 27 ||||||||||||||||||||| Sbjct: 76231 gagcagatcagcagcaatatt 76211
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete sequence Length = 228603 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 tgggagcagatcagcagcaat 24 ||||||||||||||||||||| Sbjct: 97053 tgggagcagatcagcagcaat 97033
>gb|AC109213.6| Mus musculus chromosome 16, clone RP23-345L20, complete sequence Length = 244558 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgtgtggtctctctcacagc 133 |||||||||||||||||||| Sbjct: 50338 tgtgtggtctctctcacagc 50357
>gb|AC144345.18| Medicago truncatula clone mth2-25i7, complete sequence Length = 125283 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cttgttatacttgatgatgt 116 |||||||||||||||||||| Sbjct: 82557 cttgttatacttgatgatgt 82538
>gb|AC148404.7| Medicago truncatula clone mth2-28d4, complete sequence Length = 111252 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 tccttgttatacttgatgatgtgtggtc 122 |||||||||| || |||||||||||||| Sbjct: 110341 tccttgttattctggatgatgtgtggtc 110314
>gb|AF533892.1| Mus musculus p63 (Trp63) gene, alternatively spliced, complete cds Length = 208158 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgtgtggtctctctcacagc 133 |||||||||||||||||||| Sbjct: 177702 tgtgtggtctctctcacagc 177721
>gb|AC150372.15| Medicago truncatula clone mth2-151k24, complete sequence Length = 100538 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 95 tccttgttatacttgatgatgtgtggtc 122 |||||||||| || |||||||||||||| Sbjct: 92593 tccttgttattctggatgatgtgtggtc 92620
>gb|AF369300.1|AF369300 Rabies virus V037.MG phosphoprotein (P) gene, complete cds Length = 918 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ccagaatggcagctcaagtt 71 |||||||||||||||||||| Sbjct: 512 ccagaatggcagctcaagtt 531 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,910,482 Number of Sequences: 3902068 Number of extensions: 1910482 Number of successful extensions: 31828 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31786 Number of HSP's gapped (non-prelim): 38 length of query: 257 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 235 effective length of database: 17,147,199,772 effective search space: 4029591946420 effective search space used: 4029591946420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
