ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal41j16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, comple... 40 1.7
2gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete ... 40 1.7
3emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in... 40 1.7
4gb|AC120875.12| Mus musculus chromosome 1, clone RP23-317M5, com... 38 6.5
5ref|XM_979952.1| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
6ref|XM_924051.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
7ref|XM_924058.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
8ref|XM_924052.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
9ref|XM_924054.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
10ref|XM_924045.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
11ref|XM_916022.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
12ref|XM_899101.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
13ref|XM_899121.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
14ref|XM_899106.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
15ref|XM_899116.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
16ref|XM_899089.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
17ref|XM_129477.9| PREDICTED: Mus musculus calmodulin regulated sp... 38 6.5
18gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, comp... 38 6.5
19gb|AC166654.1| Mus musculus BAC clone RP23-426B21 from chromosom... 38 6.5
20emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chr... 38 6.5
21dbj|AK137176.1| Mus musculus adult male urinary bladder cDNA, RI... 38 6.5
22dbj|AK028542.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 38 6.5
23gb|AC087318.33| Homo sapiens 12 BAC RP11-73M14 (Roswell Park Can... 38 6.5
24gb|AC004148.1|AC004148 Homo sapiens chromosome 17, clone HCIT524... 38 6.5
25gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 38 6.5
26emb|AL590873.17| Mouse DNA sequence from clone RP23-217I3 on chr... 38 6.5

>gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, complete sequence
          Length = 1732

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 62  agtgggaggacagggtagcccgaggcctattc 93
           |||||||||||||| | ||||||||| |||||
Sbjct: 374 agtgggaggacaggatggcccgaggcttattc 405



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>gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete sequence
          Length = 123565

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    actgagttcttcctcaattctctc 51
             |||||||| |||||||||||||||
Sbjct: 79670 actgagtttttcctcaattctctc 79693



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>emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in linkage group 7,
             complete sequence
          Length = 147943

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    gagctccctactgagttctt 38
             ||||||||||||||||||||
Sbjct: 60496 gagctccctactgagttctt 60515



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>gb|AC120875.12| Mus musculus chromosome 1, clone RP23-317M5, complete sequence
          Length = 195159

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 35    tcttcctcaattctctcctcctc 57
             ||||||||||| |||||||||||
Sbjct: 92681 tcttcctcaatgctctcctcctc 92703



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>ref|XM_979952.1| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1 (Camsap1l1), mRNA
          Length = 7688

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2004 tcttcctcaatgctctcctcctc 1982



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>ref|XM_924051.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 12 (Camsap1l1), mRNA
          Length = 4439

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>ref|XM_924058.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 16 (Camsap1l1), mRNA
          Length = 7823

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2139 tcttcctcaatgctctcctcctc 2117



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>ref|XM_924052.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 13 (Camsap1l1), mRNA
          Length = 7814

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_924054.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 15 (Camsap1l1), mRNA
          Length = 7799

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_924045.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 10 (Camsap1l1), mRNA
          Length = 7772

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_916022.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 9 (Camsap1l1), mRNA
          Length = 7805

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>ref|XM_899101.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 4 (Camsap1l1), mRNA
          Length = 4439

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>ref|XM_899121.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 8 (Camsap1l1), mRNA
          Length = 7823

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2139 tcttcctcaatgctctcctcctc 2117



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>ref|XM_899106.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 5 (Camsap1l1), mRNA
          Length = 7814

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_899116.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 7 (Camsap1l1), mRNA
          Length = 7799

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_899089.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 2 (Camsap1l1), mRNA
          Length = 7772

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_129477.9| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 1 (Camsap1l1), mRNA
          Length = 7805

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, complete sequence
          Length = 172812

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     ttcctcaattctctcctcc 55
              |||||||||||||||||||
Sbjct: 139515 ttcctcaattctctcctcc 139497



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>gb|AC166654.1| Mus musculus BAC clone RP23-426B21 from chromosome 17, complete sequence
          Length = 185609

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     cacagtgggaggacagggt 77
              |||||||||||||||||||
Sbjct: 112824 cacagtgggaggacagggt 112806



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>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a
             novel gene,  the FOXP4 gene for forkhead box P4 and five
             CpG islands, complete sequence
          Length = 180547

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    ttcctcaattctctcctcc 55
             |||||||||||||||||||
Sbjct: 88413 ttcctcaattctctcctcc 88395



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>dbj|AK137176.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530028C17
            product:unclassifiable, full insert sequence
          Length = 4372

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 59   cacagtgggaggacagggt 77
            |||||||||||||||||||
Sbjct: 2091 cacagtgggaggacagggt 2109



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>dbj|AK028542.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4632425I16 product:hypothetical
            Calponin-homology domain, CH-domain structure containing
            protein, full insert sequence
          Length = 4222

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   tcttcctcaattctctcctcctc 57
            ||||||||||| |||||||||||
Sbjct: 2089 tcttcctcaatgctctcctcctc 2067



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>gb|AC087318.33| Homo sapiens 12 BAC RP11-73M14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104647

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    gcacagtgggaggacaggg 76
             |||||||||||||||||||
Sbjct: 52388 gcacagtgggaggacaggg 52370



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>gb|AC004148.1|AC004148 Homo sapiens chromosome 17, clone HCIT524C5, complete sequence
          Length = 118276

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ctccctactgagttcttcc 40
             |||||||||||||||||||
Sbjct: 93598 ctccctactgagttcttcc 93616



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>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
             chromosome 4, complete sequence
          Length = 90825

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ttcttcctcaattctctcc 52
             |||||||||||||||||||
Sbjct: 37318 ttcttcctcaattctctcc 37300



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>emb|AL590873.17| Mouse DNA sequence from clone RP23-217I3 on chromosome 11, complete
              sequence
          Length = 180309

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     tcaattctctcctcctcgc 59
              |||||||||||||||||||
Sbjct: 131905 tcaattctctcctcctcgc 131923


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 906,494
Number of Sequences: 3902068
Number of extensions: 906494
Number of successful extensions: 62881
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62851
Number of HSP's gapped (non-prelim): 30
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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