| Clone Name | baal41j08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464682.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1001 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 188 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 247 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 248 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 307 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 308 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 367 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 368 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 427 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 428 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 487 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 488 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 547 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 548 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 607 Query: 539 gggtcttc 546 |||||||| Sbjct: 608 gggtcttc 615
>ref|XM_507465.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA Length = 1030 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 215 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 274 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 275 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 334 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 335 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 394 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 395 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 454 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 455 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 514 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 515 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 574 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 575 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 634 Query: 539 gggtcttc 546 |||||||| Sbjct: 635 gggtcttc 642
>ref|XM_507464.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA Length = 1031 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 216 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 275 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 276 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 335 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 336 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 395 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 396 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 455 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 456 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 515 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 516 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 575 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 576 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 635 Query: 539 gggtcttc 546 |||||||| Sbjct: 636 gggtcttc 643
>ref|XM_506760.2| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA Length = 1031 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 216 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 275 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 276 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 335 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 336 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 395 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 396 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 455 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 456 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 515 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 516 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 575 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 576 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 635 Query: 539 gggtcttc 546 |||||||| Sbjct: 636 gggtcttc 643
>dbj|AK104393.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B07, full insert sequence Length = 1030 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 215 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 274 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 275 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 334 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 335 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 394 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 395 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 454 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 455 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 514 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 515 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 574 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 575 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 634 Query: 539 gggtcttc 546 |||||||| Sbjct: 635 gggtcttc 642
>dbj|AK104206.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G01, full insert sequence Length = 1031 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 216 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 275 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 276 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 335 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 336 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 395 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 396 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 455 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 456 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 515 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 516 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 575 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 576 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 635 Query: 539 gggtcttc 546 |||||||| Sbjct: 636 gggtcttc 643
>dbj|AK099194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109D07, full insert sequence Length = 1001 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 188 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 247 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 248 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 307 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 308 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 367 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 368 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 427 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 428 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 487 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 488 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 547 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 548 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 607 Query: 539 gggtcttc 546 |||||||| Sbjct: 608 gggtcttc 615
>dbj|AK060915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G06, full insert sequence Length = 1031 Score = 341 bits (172), Expect = 2e-90 Identities = 364/428 (85%) Strand = Plus / Plus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 216 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 275 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttcaagtatttagttt 238 || || |||||||||||| |||| |||||| ||||||| ||||||| |||||| || | Sbjct: 276 tggacgagacctacggggaggtcaggttctccgacctctccggcttcaggtatttggtct 335 Query: 239 gcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgccatccttcaagt 298 | ||||||||| |||| || ||||| || |||||||||||||| || |||||| || || Sbjct: 336 ggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtcatcctgcaggt 395 Query: 299 cccgcgctcgctacgattggctgattttcctcctggaccaggcggcggcgtacctgctgg 358 | | |||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 396 tcatcactcgctttgattggctcattttcctcctggatcaggcgtcggcgtacctgctgc 455 Query: 359 tgacatcgtgctcagcggcggcggagctggtgtacctcgcgagggagggcgaccgggagg 418 |||| ||| || |||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct: 456 tgacgtcggcgtcggcggcggcggaggtggtgtacctggcgcgggagggcgaccgggagg 515 Query: 419 tgtcgtggggcgaggtgtgctcctacttcggtcggttctgcggcagggccaccgtgtccg 478 |||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 516 tgtcgtggggggaggtgtgctcctacttcggccgcttctgcggcgccgccaccgtgtccg 575 Query: 479 tggcgctgcaggccgccgcgctgctctgcttcgtcgcgctctccctcgtctccgccttcc 538 ||||||| | |||||||| || ||||||||| | |||||||||||| ||||||||||| Sbjct: 576 tggcgctcaacgccgccgccctcctctgcttcatggcgctctccctcatctccgccttca 635 Query: 539 gggtcttc 546 |||||||| Sbjct: 636 gggtcttc 643
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 218 bits (110), Expect = 2e-53 Identities = 185/210 (88%) Strand = Plus / Minus Query: 337 caggcggcggcgtacctgctggtgacatcgtgctcagcggcggcggagctggtgtacctc 396 |||||| |||||||||||||| |||| ||| || |||||||||||| |||||||||| Sbjct: 6680002 caggcgtcggcgtacctgctgctgacgtcggcgtcggcggcggcggaggtggtgtacctg 6679943 Query: 397 gcgagggagggcgaccgggaggtgtcgtggggcgaggtgtgctcctacttcggtcggttc 456 ||| |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct: 6679942 gcgcgggagggcgaccgggaggtgtcgtggggggaggtgtgctcctacttcggccgcttc 6679883 Query: 457 tgcggcagggccaccgtgtccgtggcgctgcaggccgccgcgctgctctgcttcgtcgcg 516 |||||| |||||||||||||||||||| | |||||||| || ||||||||| | ||| Sbjct: 6679882 tgcggcgccgccaccgtgtccgtggcgctcaacgccgccgccctcctctgcttcatggcg 6679823 Query: 517 ctctccctcgtctccgccttccgggtcttc 546 ||||||||| ||||||||||| |||||||| Sbjct: 6679822 ctctccctcatctccgccttcagggtcttc 6679793 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 6681913 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 6681854 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttca 226 || || |||||||||||| |||| |||||| ||||||| ||||||| Sbjct: 6681853 tggacgagacctacggggaggtcaggttctccgacctctccggcttca 6681806 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Minus Query: 228 gtatttagtttgcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgcc 287 |||||| || || ||||||||| |||| || ||||| || |||||||||||||| || | Sbjct: 6681303 gtatttggtctggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtc 6681244 Query: 288 atccttcaagtcccgcgctcgctacgattggctgattttcctcctggaccagg 340 ||||| || || | | |||||| |||||||| |||||||||||||| |||| Sbjct: 6681243 atcctgcaggttcatcactcgctttgattggctcattttcctcctggatcagg 6681191
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1131G07 Length = 133992 Score = 218 bits (110), Expect = 2e-53 Identities = 185/210 (88%) Strand = Plus / Minus Query: 337 caggcggcggcgtacctgctggtgacatcgtgctcagcggcggcggagctggtgtacctc 396 |||||| |||||||||||||| |||| ||| || |||||||||||| |||||||||| Sbjct: 1055 caggcgtcggcgtacctgctgctgacgtcggcgtcggcggcggcggaggtggtgtacctg 996 Query: 397 gcgagggagggcgaccgggaggtgtcgtggggcgaggtgtgctcctacttcggtcggttc 456 ||| |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct: 995 gcgcgggagggcgaccgggaggtgtcgtggggggaggtgtgctcctacttcggccgcttc 936 Query: 457 tgcggcagggccaccgtgtccgtggcgctgcaggccgccgcgctgctctgcttcgtcgcg 516 |||||| |||||||||||||||||||| | |||||||| || ||||||||| | ||| Sbjct: 935 tgcggcgccgccaccgtgtccgtggcgctcaacgccgccgccctcctctgcttcatggcg 876 Query: 517 ctctccctcgtctccgccttccgggtcttc 546 ||||||||| ||||||||||| |||||||| Sbjct: 875 ctctccctcatctccgccttcagggtcttc 846 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 2966 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 2907 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttca 226 || || |||||||||||| |||| |||||| ||||||| ||||||| Sbjct: 2906 tggacgagacctacggggaggtcaggttctccgacctctccggcttca 2859 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Minus Query: 228 gtatttagtttgcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgcc 287 |||||| || || ||||||||| |||| || ||||| || |||||||||||||| || | Sbjct: 2356 gtatttggtctggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtc 2297 Query: 288 atccttcaagtcccgcgctcgctacgattggctgattttcctcctggaccagg 340 ||||| || || | | |||||| |||||||| |||||||||||||| |||| Sbjct: 2296 atcctgcaggttcatcactcgctttgattggctcattttcctcctggatcagg 2244
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 218 bits (110), Expect = 2e-53 Identities = 185/210 (88%) Strand = Plus / Minus Query: 337 caggcggcggcgtacctgctggtgacatcgtgctcagcggcggcggagctggtgtacctc 396 |||||| |||||||||||||| |||| ||| || |||||||||||| |||||||||| Sbjct: 114377 caggcgtcggcgtacctgctgctgacgtcggcgtcggcggcggcggaggtggtgtacctg 114318 Query: 397 gcgagggagggcgaccgggaggtgtcgtggggcgaggtgtgctcctacttcggtcggttc 456 ||| |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct: 114317 gcgcgggagggcgaccgggaggtgtcgtggggggaggtgtgctcctacttcggccgcttc 114258 Query: 457 tgcggcagggccaccgtgtccgtggcgctgcaggccgccgcgctgctctgcttcgtcgcg 516 |||||| |||||||||||||||||||| | |||||||| || ||||||||| | ||| Sbjct: 114257 tgcggcgccgccaccgtgtccgtggcgctcaacgccgccgccctcctctgcttcatggcg 114198 Query: 517 ctctccctcgtctccgccttccgggtcttc 546 ||||||||| ||||||||||| |||||||| Sbjct: 114197 ctctccctcatctccgccttcagggtcttc 114168 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 119 gggtgtgcgtgatccccctcgccttggcctccctgtgggagatggccaccaacaagcaag 178 ||||||||| | | || |||||| |||| || ||||||||||||||||||||||||| | Sbjct: 116288 gggtgtgcgcggtgccgctcgccgtggcgtcggtgtgggagatggccaccaacaagcagg 116229 Query: 179 ccgatgacacctacggggagatcagcttctccaacctctcaggcttca 226 || || |||||||||||| |||| |||||| ||||||| ||||||| Sbjct: 116228 tggacgagacctacggggaggtcaggttctccgacctctccggcttca 116181 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Minus Query: 228 gtatttagtttgcatcaacgccgtcactgccgcctattccgtggcctccatcctaatgcc 287 |||||| || || ||||||||| |||| || ||||| || |||||||||||||| || | Sbjct: 115678 gtatttggtctggatcaacgccatcacggctgcctactcggtggcctccatcctgctgtc 115619 Query: 288 atccttcaagtcccgcgctcgctacgattggctgattttcctcctggaccagg 340 ||||| || || | | |||||| |||||||| |||||||||||||| |||| Sbjct: 115618 atcctgcaggttcatcactcgctttgattggctcattttcctcctggatcagg 115566
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Plus Query: 57 ggcatcggtgaggaagatgacgacgaggagaaggcc 92 |||||||||||| | |||||||| |||||||||||| Sbjct: 16778849 ggcatcggtgagaacgatgacgaggaggagaaggcc 16778884
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0047B10 Length = 158798 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Plus Query: 57 ggcatcggtgaggaagatgacgacgaggagaaggcc 92 |||||||||||| | |||||||| |||||||||||| Sbjct: 127543 ggcatcggtgagaacgatgacgaggaggagaaggcc 127578
>gb|AY107012.1| Zea mays PCO099293 mRNA sequence Length = 976 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Plus Query: 371 cagcggcggcggagctggtgtacctcgc 398 ||||||||||||||||| |||||||||| Sbjct: 538 cagcggcggcggagctgctgtacctcgc 565
>emb|AL353052.4| Human DNA sequence from clone RP5-865N13 on chromosome 1 Contains two novel genes, complete sequence Length = 120045 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccctg 153 |||||||||| |||||||||||||||| Sbjct: 4108 gtgatcccccccgccttggcctccctg 4134
>gb|AY596541.1| Saccharum officinarum clone SCCCLR1C04B02, complete sequence Length = 883 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Plus Query: 373 gcggcggcggagctggtgtacctcgc 398 ||||||||||||||| |||||||||| Sbjct: 436 gcggcggcggagctgctgtacctcgc 461
>emb|AL451044.7| Human DNA sequence from clone RP11-293K19 on chromosome 1 Contains part of the DOCK7 gene for dedicator of cytokinesis 7, complete sequence Length = 127370 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 126 cgtgatccccctcgccttggcctccc 151 ||||||||||| |||||||||||||| Sbjct: 26550 cgtgatcccccccgccttggcctccc 26525
>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete sequence Length = 185010 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 23960 gtgatcccccccgccttggcctccc 23984
>ref|NM_001025387.1| Mus musculus bromodomain containing 2 (Brd2), transcript variant 2, mRNA Length = 4331 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 3724 gaggaagatgacgacgaggag 3704
>ref|NM_010238.2| Mus musculus bromodomain containing 2 (Brd2), transcript variant 1, mRNA Length = 4239 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 3632 gaggaagatgacgacgaggag 3612
>gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complete sequence Length = 114085 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 96509 gtgatcccccccgccttggcctccc 96533
>gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, complete sequence Length = 178957 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 124549 gtgatcccccacgccttggcctccc 124525
>ref|XM_883486.1| Leishmania major strain Friedlin nascent polypeptide associated complex subunit (L4830.08) partial mRNA Length = 735 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 577 gaggaagatgacgacgaggag 597
>ref|XM_883488.1| Leishmania major strain Friedlin nascent polypeptide associated complex subunit (L4830.07) partial mRNA Length = 519 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 361 gaggaagatgacgacgaggag 381
>emb|CR974462.5| Mouse DNA sequence from clone RP23-222K15 on chromosome 17, complete sequence Length = 228057 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 205781 gaggaagatgacgacgaggag 205801
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 81297 gaggaagatgacgacgaggag 81277 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 79490 gaggaagatgacgacgaggag 79470
>gb|BC046809.1| Mus musculus bromodomain containing 2, mRNA (cDNA clone IMAGE:6400993), containing frame-shift errors Length = 3366 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 2759 gaggaagatgacgacgaggag 2739
>emb|CR407567.2| Human DNA sequence from clone RP11-312O7 on chromosome 1 Contains a novel gene (MGC57827) and a CpG island, complete sequence Length = 90590 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||||||||| |||||||| Sbjct: 79878 gtgatccccctcgcctcggcctccc 79854
>emb|AL365272.20| Human DNA sequence from clone RP11-328C17 on chromosome 6 Contains the gene for mitogen-activated protein kinase phosphatase X (MKPX), the 5' end of the IRF4 gene for interferon regulatory factor 4 and 2 CpG islands, complete sequence Length = 132449 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 ctccaacctctcaggcttcaa 227 ||||||||||||||||||||| Sbjct: 40838 ctccaacctctcaggcttcaa 40818
>emb|AL357493.8| Human DNA sequence from clone RP11-439A17 on chromosome 1 Contains four novel genes, a novel gene (MGC57827), a ribosomal protein L22 (RPL22) pseudogene, a histone 2 H3c (HIST2H3C) pseudogene, the HIST2H2BB gene for histone 2 H2bb, the FCGR1B gene for Fc fragment of IgG high affinity Ib receptor for (CD64) and three CpG islands, complete sequence Length = 189539 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||||||||| |||||||| Sbjct: 105964 gtgatccccctcgcctcggcctccc 105940
>emb|AL355348.28| Human DNA sequence from clone RP13-163A20 on chromosome Xq23-25 Contains part of the gene for septin 6 (SEP2, KIAA0128, MGC16619, MGC20339) (SEPT6), complete sequence Length = 31449 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 18128 gtgatcccccccgccttggcctccc 18104
>gb|AC008149.14| Homo sapiens 12 BAC RP11-394J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96995 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 643 gaacaatcactgatattagtg 663 ||||||||||||||||||||| Sbjct: 14320 gaacaatcactgatattagtg 14300
>gb|AC023891.28| Homo sapiens 3 BAC RP13-81O8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 144189 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 112299 gtgatcccccccgccttggcctccc 112323
>emb|AL109948.9|HSJ998N21 Human DNA sequence from clone RP5-998N21 on chromosome 1 Contains a ubiquitin-conjugating enzyme HBUCE1 pseudogene, the FCGR1C gene for Fc fragment of IgG high affinity Ic receptor for (CD64), two novel genes, the HIST2H2BA gene for histone 2 H2ba, the gene for a novel protein similar to histone 2 H3c (HIST2H3C), a novel gene, a ribosomal protein L22 (RPL22) pseudogene, a novel gene and three CpG islands, complete sequence Length = 129426 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||||||||| |||||||| Sbjct: 122204 gtgatccccctcgcctcggcctccc 122228
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 483 gctgcaggccgccgcgctgctctgcttcg 511 ||||||||||| ||||||||| ||||||| Sbjct: 2962939 gctgcaggccggcgcgctgctgtgcttcg 2962911
>emb|AL009226.1|MU11KLT Mus musculus DNA sequence from clone 11KLT on chromosome 17. Contains mouse RING3 gene, CpG Island Length = 11493 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 7183 gaggaagatgacgacgaggag 7163
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 gtgtccgtggcgctgcaggcc 492 ||||||||||||||||||||| Sbjct: 4984211 gtgtccgtggcgctgcaggcc 4984191
>dbj|BS000638.2| Pan troglodytes chromosome Y clone: PTBY-011C06, complete sequence Length = 86985 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 46885 gtgatcccccacgccttggcctccc 46861
>dbj|BS000637.2| Pan troglodytes chromosome Y clone: PTBY-009K23, complete sequence Length = 144454 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 133592 gtgatcccccacgccttggcctccc 133568
>dbj|BS000660.1| Pan troglodytes chromosome Y clone:PTBY-005M17, complete sequences Length = 93004 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 29312 gtgatcccccacgccttggcctccc 29288
>dbj|AK220444.1| Mus musculus mRNA for mKIAA4005 protein Length = 3625 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 3045 gaggaagatgacgacgaggag 3025
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 gctgcaggccgccgcgctgct 503 ||||||||||||||||||||| Sbjct: 2893 gctgcaggccgccgcgctgct 2873
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 19522837 gtgatcccccacgccttggcctccc 19522861
>emb|CR589922.3| Human DNA sequence from clone WI2-2158M6 on chromosome 1, complete sequence Length = 43380 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||||||||| |||||||| Sbjct: 35178 gtgatccccctcgcctcggcctccc 35154
>gb|AC110005.2| Homo sapiens chromosome 5 clone RP11-265K23, complete sequence Length = 184157 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||| |||||||||||||||| Sbjct: 147798 gtgatcccgctcgccttggcctccc 147774
>dbj|AK158970.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K530022D01 product:bromodomain containing 2, full insert sequence Length = 4475 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 3898 gaggaagatgacgacgaggag 3878
>dbj|AK168525.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920029G19 product:bromodomain containing 2, full insert sequence Length = 4352 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 3769 gaggaagatgacgacgaggag 3749
>gb|AC008570.6| Homo sapiens chromosome 5 clone CTC-549A4, complete sequence Length = 127392 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||| |||||||||||||||| Sbjct: 104264 gtgatcccgctcgccttggcctccc 104288
>emb|AL109844.14|HSJ636L22 Human DNA sequence from clone RP4-636L22 on chromosome 1, complete sequence Length = 136815 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||||||||| |||||||| Sbjct: 108805 gtgatccccctcgcctcggcctccc 108781
>dbj|AB212273.1| Mus musculus Brd2 mRNA for bromodomain-containing Brd2 protein, complete cds Length = 2336 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 2232 gaggaagatgacgacgaggag 2212
>gb|AC010723.3|AC010723 Homo sapiens BAC clone RP11-139C10 from Y, complete sequence Length = 174420 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctccc 151 |||||||||| |||||||||||||| Sbjct: 144476 gtgatcccccacgccttggcctccc 144500
>emb|AJ404610.1|LIN404610 Leishmania infantum mRNA for nascent polypeptide associated complex homologue, alpha chain Length = 1321 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 478 gaggaagatgacgacgaggag 498
>gb|AF100956.1|AF100956 Mus musculus major histocompatibility locus class II region; Fas-binding protein Daxx (DAXX) gene, partial cds; Bing1 (BING1), tapasin (tapasin), RalGDS-like factor (RLF), KE2 (KE2), BING4 (BING4), beta1, 3-galactosyl transferase (beta1,3-galactosyl transferase), ribosomal protein subunit S18 (RPS18), Sacm21 (Sacm21), H2K1(b) (H2-K1(b)), RING1 (RING1), KE6a (KE6a), KE4 (KE4), RXRbeta (RXRbeta), collagen alpha-2 (XI) (COLA11A2), H2-O alpha (H2-Oalpha), RING3 (RING3), H2-M alpha (H2-M alpha), H2-M beta 2 (H2-M beta2), and H2-M beta1 (H2-M beta1) genes, complete cds; and LMP 2 gene, partial cds Length = 273800 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 199259 gaggaagatgacgacgaggag 199279
>gb|AF045462.1|AF045462 Mus musculus female sterile homeotic-related protein Frg-1 mRNA, complete cds Length = 3649 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 3043 gaggaagatgacgacgaggag 3023
>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence Length = 192562 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 cctccatcctaatgccatcct 292 ||||||||||||||||||||| Sbjct: 81264 cctccatcctaatgccatcct 81284
>dbj|D89801.1| Mus musculus Ring3 gene, complete cds Length = 10222 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgaggag 86 ||||||||||||||||||||| Sbjct: 9395 gaggaagatgacgacgaggag 9375
>gb|AY655638.1| Menidia menidia TMO-4c4 gene, partial sequence Length = 497 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 gggagggcgaccgggaggtgtcgt 424 |||||||||||||||||| ||||| Sbjct: 346 gggagggcgaccgggaggagtcgt 323
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 gcgctgcaggccgccgcgct 500 |||||||||||||||||||| Sbjct: 59706 gcgctgcaggccgccgcgct 59687
>gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from South Korea, complete genome Length = 112080 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 gcggcagggccaccgtgtcc 477 |||||||||||||||||||| Sbjct: 57857 gcggcagggccaccgtgtcc 57876
>ref|XM_414843.1| PREDICTED: Gallus gallus similar to 60S ribosomal protein L3-like (LOC416542), mRNA Length = 1303 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 gagatcagcttctccaacctctca 219 |||||| ||||||||||||||||| Sbjct: 636 gagatctgcttctccaacctctca 613
>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete sequence Length = 197272 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgagga 85 |||||||||||||||||||| Sbjct: 167181 gaggaagatgacgacgagga 167200
>ref|XM_655960.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3448.2), mRNA Length = 2655 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgagga 85 |||||||||||||||||||| Sbjct: 508 gaggaagatgacgacgagga 527
>ref|XM_974485.1| PREDICTED: Mus musculus RIKEN cDNA B020017C02 gene (B020017C02Rik), mRNA Length = 1924 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgagga 85 |||||||||||||||||||| Sbjct: 360 gaggaagatgacgacgagga 341
>ref|XM_143238.5| PREDICTED: Mus musculus RIKEN cDNA B020017C02 gene (B020017C02Rik), mRNA Length = 1924 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgagga 85 |||||||||||||||||||| Sbjct: 360 gaggaagatgacgacgagga 341
>ref|XM_915637.2| PREDICTED: Mus musculus RIKEN cDNA B020017C02 gene (B020017C02Rik), mRNA Length = 1924 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgagga 85 |||||||||||||||||||| Sbjct: 360 gaggaagatgacgacgagga 341
>emb|BX957288.10| Zebrafish DNA sequence from clone DKEY-146P4 in linkage group 12, complete sequence Length = 172591 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 679 tgaaatactgtgaaataataaactttat 706 ||||||||||||||| ||||||| |||| Sbjct: 160347 tgaaatactgtgaaaaaataaacattat 160320
>ref|XM_662045.1| Cryptosporidium hominis TU502 RNA binding protein (Chro.40387) partial mRNA Length = 2712 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gaggaagatgacgacgagga 85 |||||||||||||||||||| Sbjct: 100 gaggaagatgacgacgagga 119
>emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chromosome 6 Contains the 3' end of the LPA gene for lipoprotein (Lp(a)) and a CpG island, complete sequence Length = 135751 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 attggctgattttcctcctg 333 |||||||||||||||||||| Sbjct: 132622 attggctgattttcctcctg 132641
>emb|AL049738.4|HSJ944N18 Human DNA sequence from clone RP5-944N18 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 122383 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 681 aaatactgtgaaataataaa 700 |||||||||||||||||||| Sbjct: 108480 aaatactgtgaaataataaa 108499
>gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome Length = 112636 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 gcggcagggccaccgtgtcc 477 |||||||||||||||||||| Sbjct: 58166 gcggcagggccaccgtgtcc 58185
>gb|AF263284.4| Homo sapiens chromosome 8 clone GS1-9J2 map 8q11-q13, complete sequence Length = 99592 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ggtcggttctgcggcagggc 467 |||||||||||||||||||| Sbjct: 7512 ggtcggttctgcggcagggc 7493
>gb|AC092829.4| Homo sapiens 12 BAC RP11-165P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116783 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 681 aaatactgtgaaataataaa 700 |||||||||||||||||||| Sbjct: 48059 aaatactgtgaaataataaa 48040
>ref|NM_206438.1| Drosophila melanogaster TBP-associated factor 1 CG17603-RB, transcript variant B (Taf1), mRNA Length = 6749 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 2971 aggaagatgacgacgaggag 2990
>ref|NM_206437.1| Drosophila melanogaster TBP-associated factor 1 CG17603-RC, transcript variant C (Taf1), mRNA Length = 6656 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 2971 aggaagatgacgacgaggag 2990
>ref|NM_057608.4| Drosophila melanogaster TBP-associated factor 1 CG17603-RA, transcript variant A (Taf1), mRNA Length = 6557 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 2971 aggaagatgacgacgaggag 2990
>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence Length = 184396 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 gtgatccccctcgccttggcctcc 150 ||||||| |||||||||||||||| Sbjct: 73209 gtgatccacctcgccttggcctcc 73186
>gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, complete sequence Length = 187204 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ggtcggttctgcggcagggc 467 |||||||||||||||||||| Sbjct: 88487 ggtcggttctgcggcagggc 88468
>dbj|AK139788.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020017C02 product:weakly similar to Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) [Pan troglodytes], full insert sequence Length = 3026 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 gaggaagatgacgacgagga 85 |||||||||||||||||||| Sbjct: 367 gaggaagatgacgacgagga 348
>ref|XM_691032.1| PREDICTED: Danio rerio similar to alpha-2-macroglobulin-1 (LOC567732), mRNA Length = 2045 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 atccatgatgaacaatcact 653 |||||||||||||||||||| Sbjct: 1255 atccatgatgaacaatcact 1236
>ref|XM_692385.1| PREDICTED: Danio rerio similar to alpha-2-macroglobulin-1 (LOC569025), mRNA Length = 4826 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 atccatgatgaacaatcact 653 |||||||||||||||||||| Sbjct: 4036 atccatgatgaacaatcact 4017
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 cgcgctctccctcgtctccg 532 |||||||||||||||||||| Sbjct: 5043251 cgcgctctccctcgtctccg 5043270 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 cgcgctctccctcgtctccg 532 |||||||||||||||||||| Sbjct: 5000599 cgcgctctccctcgtctccg 5000618
>gb|AC095013.1| Drosophila melanogaster, chromosome 3R, region 83F-83F, BAC clone BACR19I14, complete sequence Length = 175648 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 116174 aggaagatgacgacgaggag 116193
>gb|S61883.1| Drosophila melanogaster transcription factor TFIID 230 kda subunit mRNA, complete cds Length = 6552 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 2956 aggaagatgacgacgaggag 2975
>emb|BX929329.2| Gallus gallus finished cDNA, clone ChEST982j14 Length = 1303 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 gagatcagcttctccaacctctca 219 |||||| ||||||||||||||||| Sbjct: 637 gagatctgcttctccaacctctca 614
>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence Length = 429825 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 406289 aggaagatgacgacgaggag 406270
>gb|AC108070.2| Homo sapiens BAC clone RP11-638P8 from 2, complete sequence Length = 92113 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 tgatccccctcgccttggcctccc 151 ||||||||| |||||||||||||| Sbjct: 72937 tgatcccccccgccttggcctccc 72960
>gb|AC004400.2|AC004400 Homo sapiens chromosome 19, cosmid F24069 (LLNLF-199F1), complete sequence Length = 33770 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 tgatccccctcgccttggcctccc 151 ||||||||| |||||||||||||| Sbjct: 14493 tgatcccccccgccttggcctccc 14516
>gb|BT004888.1| Drosophila melanogaster RE74933 full insert cDNA Length = 6661 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 2971 aggaagatgacgacgaggag 2990
>emb|BX935844.1| Gallus gallus finished cDNA, clone ChEST163e11 Length = 1304 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 gagatcagcttctccaacctctca 219 |||||| ||||||||||||||||| Sbjct: 637 gagatctgcttctccaacctctca 614
>gb|BT024196.1| Drosophila melanogaster RE63802 full insert cDNA Length = 6644 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 2956 aggaagatgacgacgaggag 2975
>emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in linkage group 18, complete sequence Length = 150365 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 679 tgaaatactgtgaaataata 698 |||||||||||||||||||| Sbjct: 24968 tgaaatactgtgaaataata 24949
>emb|CR925718.11| Zebrafish DNA sequence from clone CH211-287A22 in linkage group 20, complete sequence Length = 151300 Score = 40.1 bits (20), Expect = 9.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 676 atgtgaaatactgtg-aaataataaactttat 706 |||||||||| |||| |||||||||||||||| Sbjct: 7639 atgtgaaataatgtgtaaataataaactttat 7608
>emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in linkage group 18, complete sequence Length = 263615 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 679 tgaaatactgtgaaataata 698 |||||||||||||||||||| Sbjct: 106385 tgaaatactgtgaaataata 106366
>emb|AL732341.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0213E10, complete sequence Length = 26755 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 gctctccctcgtctccgcct 535 |||||||||||||||||||| Sbjct: 23092 gctctccctcgtctccgcct 23073
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 gctctccctcgtctccgcct 535 |||||||||||||||||||| Sbjct: 7215 gctctccctcgtctccgcct 7196
>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete sequence Length = 298020 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 170318 aggaagatgacgacgaggag 170337
>dbj|AP000894.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-672L10, complete sequence Length = 170522 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 tgatccccctcgccttggcctccc 151 ||||||||| |||||||||||||| Sbjct: 24365 tgatcccccccgccttggcctccc 24342
>gb|AY539385.1| Menidia menidia TMO-4c4 gene, partial sequence Length = 483 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 gggagggcgaccgggaggtgtcgt 424 |||||||||||||||||| ||||| Sbjct: 346 gggagggcgaccgggaggagtcgt 323
>gb|AY425709.1| Ctenopharyngodon idella alpha-2-macroglobulin mRNA, partial cds Length = 3811 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 atccatgatgaacaatcact 653 |||||||||||||||||||| Sbjct: 874 atccatgatgaacaatcact 855
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 aaataataaactttataatt 710 |||||||||||||||||||| Sbjct: 435469 aaataataaactttataatt 435450
>gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 DS00004 (D12)), complete sequence Length = 85757 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aggaagatgacgacgaggag 86 |||||||||||||||||||| Sbjct: 23537 aggaagatgacgacgaggag 23556
>emb|BX000993.6| Zebrafish DNA sequence from clone DKEY-88I22 in linkage group 1, complete sequence Length = 203257 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 677 tgtgaaatactgtgaaataa 696 |||||||||||||||||||| Sbjct: 182149 tgtgaaatactgtgaaataa 182130
>gb|AC141560.4| Mus musculus BAC clone RP23-425A5 from 12, complete sequence Length = 196665 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tgccatccttcaagtcccgc 303 |||||||||||||||||||| Sbjct: 46359 tgccatccttcaagtcccgc 46340
>emb|AL449209.2|HS469K11 Homo sapiens chromosome 3 sequence from BAC 469K11 map 3q21 region D3S3607-D3S1587, complete sequence Length = 120608 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 gtgatccccctcgccttggcctcc 150 ||||||||||| |||||||||||| Sbjct: 23454 gtgatcccccttgccttggcctcc 23477
>dbj|AB026129.1| Cyprinus carpio A2M-2 mRNA for alpha-2-macroglobulin-2, partial cds Length = 4248 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 atccatgatgaacaatcact 653 |||||||||||||||||||| Sbjct: 1468 atccatgatgaacaatcact 1449 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,772,988 Number of Sequences: 3902068 Number of extensions: 5772988 Number of successful extensions: 182431 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 181790 Number of HSP's gapped (non-prelim): 631 length of query: 710 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 687 effective length of database: 17,143,297,704 effective search space: 11777445522648 effective search space used: 11777445522648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)