ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41i24 |
|---|---|
| Clone Library Name | barley_pub |
>NIR_PHOLA (Q51879) Ferredoxin--nitrite reductase (EC 1.7.7.1)| Length = 510 Score = 31.6 bits (70), Expect = 0.81 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = -1 Query: 415 KEFKLDSFQANAGVVFQSLVNFAGEFSCRFSLCQ--NSIAAYCRVTESDVGVAPP 257 KE L+ F + G++ +SLV+ G C F+L + N A R ES++ +A P Sbjct: 375 KEPLLEKFSVSPGLLVRSLVSCTGAQFCNFALIETKNRAMALIRELESELELARP 429
>PA22_ACAAN (P81237) Phospholipase A2 (EC 3.1.1.4) (Acanthin II)| (Phosphatidylcholine 2-acylhydrolase) Length = 118 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/62 (27%), Positives = 25/62 (40%) Frame = +2 Query: 212 DAARAACVSRAFLCCWRCYPNIRFSNSTVGCNGVLTKAETARKFTSKVNQALKNHSGIGL 391 +A + C + L W C ++ NS C G + + A KN+ GIG Sbjct: 54 EAEKKRCGPKMTLYSWECANDVPVCNSKSACEGFVCDCDAAAAKCFAKAPYNKNNIGIGS 113 Query: 392 KT 397 KT Sbjct: 114 KT 115
>FBX11_RAT (Q7TSL3) F-box only protein 11| Length = 843 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +2 Query: 86 AKRGRSSWQQDDHSEGRKRVKYSIPDLPQKIWRHIISLVPMQDAARAACVSRAF 247 AKR R S + D S +Y LP ++ I S + QD RAACV + F Sbjct: 50 AKRARVSGKSQDLSAAPAE-QYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRF 102
>FBX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated protein VIT-1)| Length = 843 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +2 Query: 86 AKRGRSSWQQDDHSEGRKRVKYSIPDLPQKIWRHIISLVPMQDAARAACVSRAF 247 AKR R S + D S +Y LP ++ I S + QD RAACV + F Sbjct: 50 AKRARVSGKSQDLSAAPAE-QYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRF 102
>ATP6_TETNG (Q4JQI2) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 227 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -2 Query: 351 LLVNFLAVSAFVRTPLQPTVELLNLML 271 LL+ +A +AFV PL PTV +L +L Sbjct: 170 LLIQLIATAAFVLLPLMPTVAILTTIL 196
>PA2A_PSEAU (P20255) Phospholipase A2 isozyme PA-12A (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 118 Score = 29.3 bits (64), Expect = 4.0 Identities = 11/42 (26%), Positives = 18/42 (42%) Frame = +2 Query: 209 QDAARAACVSRAFLCCWRCYPNIRFSNSTVGCNGVLTKAETA 334 + A + C + L W+C N+ NS GC + + A Sbjct: 53 EQAGKKGCFPKLTLYSWKCTGNVPTCNSKTGCKSFVCACDAA 94
>NAS23_CAEEL (Q7Z0M7) Zinc metalloproteinase nas-23 precursor (EC 3.4.24.21)| (Nematode astacin 23) Length = 537 Score = 28.9 bits (63), Expect = 5.3 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 284 SNSTVGCNGVLTKAETARKFTSKVNQALKNHSGI 385 ++S C GVL ET RKFT+ + + KN GI Sbjct: 350 ASSPAKCTGVLVAGETQRKFTANI-KPNKNAKGI 382
>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7073 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/64 (26%), Positives = 25/64 (39%) Frame = +2 Query: 227 ACVSRAFLCCWRCYPNIRFSNSTVGCNGVLTKAETARKFTSKVNQALKNHSGIGLKTIKL 406 AC+ R FLCC CY ++ T+ K VN + N G + + Sbjct: 5319 ACIRRPFLCCKCCYDHV---------------ISTSHKLVLSVNPYVCNAPGCDVTDVTQ 5363 Query: 407 EFLG 418 +LG Sbjct: 5364 LYLG 5367
>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7071 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/64 (26%), Positives = 25/64 (39%) Frame = +2 Query: 227 ACVSRAFLCCWRCYPNIRFSNSTVGCNGVLTKAETARKFTSKVNQALKNHSGIGLKTIKL 406 AC+ R FLCC CY ++ T+ K VN + N G + + Sbjct: 5317 ACIRRPFLCCKCCYDHV---------------ISTSHKLVLSVNPYVCNAPGCDVTDVTQ 5361 Query: 407 EFLG 418 +LG Sbjct: 5362 LYLG 5365
>PA21B_PSEAU (P04056) Phospholipase A2 isozyme PA-11 (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 118 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/42 (26%), Positives = 18/42 (42%) Frame = +2 Query: 209 QDAARAACVSRAFLCCWRCYPNIRFSNSTVGCNGVLTKAETA 334 + A + C + L W+C N+ NS GC + + A Sbjct: 53 EQAGKKGCFPKLTLYSWKCTGNVPTCNSKPGCKSFVCACDAA 94
>MUCS_BOVIN (P98091) Submaxillary mucin-like protein| Length = 563 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +2 Query: 251 CCWRCYPNIRFS--NSTVGCNGVLTKAETAR 337 CC+ C P R S N TV NG K E AR Sbjct: 463 CCYTCKPYCRSSSVNVTVNYNGCKKKVEMAR 493
>YIK8_YEAST (P40483) Hypothetical zinc metalloproteinase YIL108W (EC 3.4.24.-)| Length = 696 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +2 Query: 335 RKFTSKVNQALKNHSGIGLKTIKLEFLGHNS 427 R + SK+ ++KNH+ I + +K GH + Sbjct: 585 RNYFSKITHSIKNHASINEENLKSVLFGHET 615
>ATP6_LATCH (O03169) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 220 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -2 Query: 351 LLVNFLAVSAFVRTPLQPTVELLNLML 271 LL+ +A +AFV P+ PTV LL ++ Sbjct: 163 LLMQLIATAAFVLLPMMPTVALLTTLV 189
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RNA polymerase II subunit 1) Length = 1752 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +3 Query: 45 VAGYKPVMTQFLC*RKEDAHPGNKMIIQRVGKELNTRYQTFHRKFGVI 188 V Y Q L D HPG K II+ G+ ++ RY H++ G I Sbjct: 386 VTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRY---HKRAGDI 430
>NT56_DROME (Q27333) Lethal(2)neighbour of tid protein (NOT56) (NOT45)| Length = 510 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +2 Query: 254 CWRCYPNIRFSNSTVGCNGVLTKAETARKF--TSKVNQALK 370 CW YP+ FS++ + ++ A A++ T ++N A K Sbjct: 459 CWNTYPSTNFSSAALHFTHIILLAGVAKQLIQTMRINNAAK 499
>ATP6_ONCMA (Q36964) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| (Fragment) Length = 219 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 351 LLVNFLAVSAFVRTPLQPTVELL 283 LL+ +A +AFV PL PTV +L Sbjct: 162 LLIQLIATAAFVLLPLMPTVAIL 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,724,698 Number of Sequences: 219361 Number of extensions: 970270 Number of successful extensions: 2756 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2729 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2756 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
