>UB2V2_RAT (Q7M767) Ubiquitin-conjugating enzyme E2 variant 2|
           (Ubiquitin-conjugating enzyme variant MMS2)
          Length = 144

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +2

Query: 137 SAPVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNT 295
           S  V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T
Sbjct: 3   STGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT 55

>UB2V2_MOUSE (Q9D2M8) Ubiquitin-conjugating enzyme E2 variant 2 (Ubc-like|
           protein MMS2)
          Length = 144

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +2

Query: 137 SAPVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNT 295
           S  V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T
Sbjct: 3   STGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT 55

>UB2V2_HUMAN (Q15819) Ubiquitin-conjugating enzyme E2 variant 2 (MMS2)|
           (Enterocyte differentiation-associated factor EDAF-1)
           (Enterocyte differentiation-promoting factor) (EDPF-1)
           (Vitamin D3-inducible protein) (DDVit 1)
          Length = 144

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +2

Query: 137 SAPVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNT 295
           S  V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T
Sbjct: 3   STGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT 55

>UB2V1_MOUSE (Q9CZY3) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)|
          Length = 147

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 29/58 (50%), Positives = 39/58 (67%)
 Frame = +2

Query: 122 MGSEGSAPVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNT 295
           M +   + V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T
Sbjct: 1   MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT 58

>UB2V1_HUMAN (Q13404) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)|
           (Ubiquitin-conjugating enzyme variant Kua)
           (TRAF6-regulated IKK activator 1 beta Uev1A)
          Length = 221

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 28/50 (56%), Positives = 36/50 (72%)
 Frame = +2

Query: 146 VVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNT 295
           V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T
Sbjct: 83  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT 132

>MMS2_YEAST (P53152) Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2)|
          Length = 137

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 26/48 (54%), Positives = 33/48 (68%)
 Frame = +2

Query: 152 VPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNT 295
           VPRNFR      +GEKG G  + SYG+ D+DDI M  W GTI+GPP++
Sbjct: 4   VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHS 51

>MMS2_SCHPO (O74983) Ubiquitin-conjugating enzyme spm2 (Ubiquitin-conjugating|
           enzyme variant MMS2 homolog) (UEV MMS2)
          Length = 139

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 22/48 (45%), Positives = 33/48 (68%)
 Frame = +2

Query: 152 VPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNT 295
           VPRNF+      +GEKG+G+ + SYG+ +ADDI +  W  TI+GP ++
Sbjct: 4   VPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHS 51

>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2336

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 53   RGNPSSAAQG---RKRPKLELEERLAMGSEGSAPVVVPRNFR 169
            RG+P  A +    R R     ++    G EG+APV+VP+  R
Sbjct: 919  RGSPEEATEREPRRHRAHRHAQDSSKEGKEGTAPVLVPKGER 960


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,031,761
Number of Sequences: 219361
Number of extensions: 473141
Number of successful extensions: 1158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)