ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41i16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468288.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1893 Score = 149 bits (75), Expect = 9e-33 Identities = 197/238 (82%) Strand = Plus / Plus Query: 161 tcaccgtcgccgattggggcgtgcaagcgacagtgagctggntactctcagattgctttg 220 |||||||||| ||||||||||| ||||||| ||| |||||| ||||||| ||||||||| Sbjct: 435 tcaccgtcgcagattggggcgtccaagcgatagtaagctggctactctcggattgctttc 494 Query: 221 gtgatgaaagtgtgtcgattgtagcagaggaagatgataagacgctgtccagcagtgatg 280 ||||||| | || || ||||| || ||||||||| ||||||| || || || |||| Sbjct: 495 aagatgaaaacatatctatagtagccgaagaagatgatgagacgctatctagtagcgatg 554 Query: 281 gcacggctttgcttgagtctgttgtcgctgcagtcaacggttgcctagttgaagctccaa 340 | | ||||||||||| ||||| || ||||| ||||| |||||| | |||||||||| | Sbjct: 555 gtgcagctttgcttgaatctgtcgttgctgctgtcaatggttgcttgattgaagctccga 614 Query: 341 agtatgggctgagatccccggagaaagacctcggggctcatgatgttcttcaagctat 398 ||||||||||||| ||||| |||||||| ||| ||||||||| ||||||||||||| Sbjct: 615 agtatgggctgaggtccccagagaaagagctcaaagctcatgatattcttcaagctat 672 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 22 atggaggcggcggtgcgcgtcgtgcaggtcgcctgcacgctctgccagcgggtgcaggac 81 ||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| | Sbjct: 308 atggaggtcgcggtgcgcgtcgtgcaggccgcctgcaccctctgccagcgcgtgcagagc 367 Query: 82 tcgctcctcctc 93 |||||||||||| Sbjct: 368 tcgctcctcctc 379
>dbj|AK065057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J07, full insert sequence Length = 1893 Score = 149 bits (75), Expect = 9e-33 Identities = 197/238 (82%) Strand = Plus / Plus Query: 161 tcaccgtcgccgattggggcgtgcaagcgacagtgagctggntactctcagattgctttg 220 |||||||||| ||||||||||| ||||||| ||| |||||| ||||||| ||||||||| Sbjct: 435 tcaccgtcgcagattggggcgtccaagcgatagtaagctggctactctcggattgctttc 494 Query: 221 gtgatgaaagtgtgtcgattgtagcagaggaagatgataagacgctgtccagcagtgatg 280 ||||||| | || || ||||| || ||||||||| ||||||| || || || |||| Sbjct: 495 aagatgaaaacatatctatagtagccgaagaagatgatgagacgctatctagtagcgatg 554 Query: 281 gcacggctttgcttgagtctgttgtcgctgcagtcaacggttgcctagttgaagctccaa 340 | | ||||||||||| ||||| || ||||| ||||| |||||| | |||||||||| | Sbjct: 555 gtgcagctttgcttgaatctgtcgttgctgctgtcaatggttgcttgattgaagctccga 614 Query: 341 agtatgggctgagatccccggagaaagacctcggggctcatgatgttcttcaagctat 398 ||||||||||||| ||||| |||||||| ||| ||||||||| ||||||||||||| Sbjct: 615 agtatgggctgaggtccccagagaaagagctcaaagctcatgatattcttcaagctat 672 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 22 atggaggcggcggtgcgcgtcgtgcaggtcgcctgcacgctctgccagcgggtgcaggac 81 ||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| | Sbjct: 308 atggaggtcgcggtgcgcgtcgtgcaggccgcctgcaccctctgccagcgcgtgcagagc 367 Query: 82 tcgctcctcctc 93 |||||||||||| Sbjct: 368 tcgctcctcctc 379
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 135 bits (68), Expect = 1e-28 Identities = 187/227 (82%) Strand = Plus / Plus Query: 172 gattggggcgtgcaagcgacagtgagctggntactctcagattgctttggtgatgaaagt 231 ||||||||||| ||||||| ||| |||||| ||||||| ||||||||| ||||||| Sbjct: 122240 gattggggcgtccaagcgatagtaagctggctactctcggattgctttcaagatgaaaac 122299 Query: 232 gtgtcgattgtagcagaggaagatgataagacgctgtccagcagtgatggcacggctttg 291 | || || ||||| || ||||||||| ||||||| || || || ||||| | |||||| Sbjct: 122300 atatctatagtagccgaagaagatgatgagacgctatctagtagcgatggtgcagctttg 122359 Query: 292 cttgagtctgttgtcgctgcagtcaacggttgcctagttgaagctccaaagtatgggctg 351 ||||| ||||| || ||||| ||||| |||||| | |||||||||| |||||||||||| Sbjct: 122360 cttgaatctgtcgttgctgctgtcaatggttgcttgattgaagctccgaagtatgggctg 122419 Query: 352 agatccccggagaaagacctcggggctcatgatgttcttcaagctat 398 || ||||| |||||||| ||| ||||||||| ||||||||||||| Sbjct: 122420 aggtccccagagaaagagctcaaagctcatgatattcttcaagctat 122466 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 22 atggaggcggcggtgcgcgtcgtgcaggtcgcctgcacgctctgccagcgggtgcaggac 81 ||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| | Sbjct: 121489 atggaggtcgcggtgcgcgtcgtgcaggccgcctgcaccctctgccagcgcgtgcagagc 121548 Query: 82 tcgctcctcctc 93 |||||||||||| Sbjct: 121549 tcgctcctcctc 121560
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 135 bits (68), Expect = 1e-28 Identities = 187/227 (82%) Strand = Plus / Minus Query: 172 gattggggcgtgcaagcgacagtgagctggntactctcagattgctttggtgatgaaagt 231 ||||||||||| ||||||| ||| |||||| ||||||| ||||||||| ||||||| Sbjct: 34382866 gattggggcgtccaagcgatagtaagctggctactctcggattgctttcaagatgaaaac 34382807 Query: 232 gtgtcgattgtagcagaggaagatgataagacgctgtccagcagtgatggcacggctttg 291 | || || ||||| || ||||||||| ||||||| || || || ||||| | |||||| Sbjct: 34382806 atatctatagtagccgaagaagatgatgagacgctatctagtagcgatggtgcagctttg 34382747 Query: 292 cttgagtctgttgtcgctgcagtcaacggttgcctagttgaagctccaaagtatgggctg 351 ||||| ||||| || ||||| ||||| |||||| | |||||||||| |||||||||||| Sbjct: 34382746 cttgaatctgtcgttgctgctgtcaatggttgcttgattgaagctccgaagtatgggctg 34382687 Query: 352 agatccccggagaaagacctcggggctcatgatgttcttcaagctat 398 || ||||| |||||||| ||| ||||||||| ||||||||||||| Sbjct: 34382686 aggtccccagagaaagagctcaaagctcatgatattcttcaagctat 34382640 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 22 atggaggcggcggtgcgcgtcgtgcaggtcgcctgcacgctctgccagcgggtgcaggac 81 ||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| | Sbjct: 34383617 atggaggtcgcggtgcgcgtcgtgcaggccgcctgcaccctctgccagcgcgtgcagagc 34383558 Query: 82 tcgctcctcctc 93 |||||||||||| Sbjct: 34383557 tcgctcctcctc 34383546
>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1548_F12 Length = 118814 Score = 135 bits (68), Expect = 1e-28 Identities = 187/227 (82%) Strand = Plus / Minus Query: 172 gattggggcgtgcaagcgacagtgagctggntactctcagattgctttggtgatgaaagt 231 ||||||||||| ||||||| ||| |||||| ||||||| ||||||||| ||||||| Sbjct: 80513 gattggggcgtccaagcgatagtaagctggctactctcggattgctttcaagatgaaaac 80454 Query: 232 gtgtcgattgtagcagaggaagatgataagacgctgtccagcagtgatggcacggctttg 291 | || || ||||| || ||||||||| ||||||| || || || ||||| | |||||| Sbjct: 80453 atatctatagtagccgaagaagatgatgagacgctatctagtagcgatggtgcagctttg 80394 Query: 292 cttgagtctgttgtcgctgcagtcaacggttgcctagttgaagctccaaagtatgggctg 351 ||||| ||||| || ||||| ||||| |||||| | |||||||||| |||||||||||| Sbjct: 80393 cttgaatctgtcgttgctgctgtcaatggttgcttgattgaagctccgaagtatgggctg 80334 Query: 352 agatccccggagaaagacctcggggctcatgatgttcttcaagctat 398 || ||||| |||||||| ||| ||||||||| ||||||||||||| Sbjct: 80333 aggtccccagagaaagagctcaaagctcatgatattcttcaagctat 80287 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 22 atggaggcggcggtgcgcgtcgtgcaggtcgcctgcacgctctgccagcgggtgcaggac 81 ||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| | Sbjct: 81264 atggaggtcgcggtgcgcgtcgtgcaggccgcctgcaccctctgccagcgcgtgcagagc 81205 Query: 82 tcgctcctcctc 93 |||||||||||| Sbjct: 81204 tcgctcctcctc 81193
>gb|AF411291.1|AF411291 Hepatitis B virus S antigen gene, complete cds Length = 681 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 gcagaggaagatgataagacgc 265 |||||||||||||||||||||| Sbjct: 255 gcagaggaagatgataagacgc 234
>gb|AE005056.1| Halobacterium sp. NRC-1 section 87 of 170 of the complete genome Length = 14720 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 ggcggcggtgcgcgtcgtgcag 48 |||||||||||||||||||||| Sbjct: 4426 ggcggcggtgcgcgtcgtgcag 4405
>gb|AC082649.4| Homo sapiens BAC clone RP11-99E17 from 4, complete sequence Length = 173146 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 attgctttggtgatgaaagtg 232 ||||||||||||||||||||| Sbjct: 109585 attgctttggtgatgaaagtg 109565
>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence Length = 198336 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ctgagatccccggagaaaga 368 |||||||||||||||||||| Sbjct: 109218 ctgagatccccggagaaaga 109199
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tgcgcgtcgtgcaggtcgcc 54 |||||||||||||||||||| Sbjct: 616432 tgcgcgtcgtgcaggtcgcc 616413
>gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome 12, complete sequence Length = 187364 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 atgatgttcttcaagctata 399 |||||||||||||||||||| Sbjct: 23567 atgatgttcttcaagctata 23548
>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence Length = 230184 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ctgagatccccggagaaaga 368 |||||||||||||||||||| Sbjct: 10973 ctgagatccccggagaaaga 10992 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,221,983 Number of Sequences: 3902068 Number of extensions: 2221983 Number of successful extensions: 43047 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42967 Number of HSP's gapped (non-prelim): 75 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
