| Clone Name | baal41i12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025D04, full insert sequence Length = 4581 Score = 153 bits (77), Expect = 1e-34 Identities = 115/128 (89%) Strand = Plus / Plus Query: 1 tcctgcgccagctcggagatctcgccgaatttgcggcagatatttttcatgacctacacg 60 ||||||||||||||||||||||||| |||||||| |||||| ||||||| ||| |||| | Sbjct: 505 tcctgcgccagctcggagatctcgcggaatttgcagcagatgtttttcacgacttacatg 564 Query: 61 agcaagttataactacatcgtctagggggcgtaaggtgttgactcgagtncagaacattg 120 ||||||||||||||||||| |||||||||| |||||| |||||||||| |||||||| | Sbjct: 565 agcaagttataactacatctgctagggggcgcaaggtgctgactcgagtacagaacatcg 624 Query: 121 aagcagca 128 | |||||| Sbjct: 625 aggcagca 632
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 3e-20 Identities = 88/100 (88%) Strand = Plus / Plus Query: 29 atttgcggcagatatttttcatgacctacacgagcaagttataactacatcgtctagggg 88 |||||| |||||| ||||||| ||| |||| |||||||||||||||||||| ||||||| Sbjct: 5891110 atttgcagcagatgtttttcacgacttacatgagcaagttataactacatctgctagggg 5891169 Query: 89 gcgtaaggtgttgactcgagtncagaacattgaagcagca 128 ||| |||||| |||||||||| |||||||| || |||||| Sbjct: 5891170 gcgcaaggtgctgactcgagtacagaacatcgaggcagca 5891209 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1 tcctgcgccagctcggagatctcgc 25 ||||||||||||||||||||||||| Sbjct: 5890109 tcctgcgccagctcggagatctcgc 5890133
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 105 bits (53), Expect = 3e-20 Identities = 88/100 (88%) Strand = Plus / Plus Query: 29 atttgcggcagatatttttcatgacctacacgagcaagttataactacatcgtctagggg 88 |||||| |||||| ||||||| ||| |||| |||||||||||||||||||| ||||||| Sbjct: 94851 atttgcagcagatgtttttcacgacttacatgagcaagttataactacatctgctagggg 94910 Query: 89 gcgtaaggtgttgactcgagtncagaacattgaagcagca 128 ||| |||||| |||||||||| |||||||| || |||||| Sbjct: 94911 gcgcaaggtgctgactcgagtacagaacatcgaggcagca 94950 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1 tcctgcgccagctcggagatctcgc 25 ||||||||||||||||||||||||| Sbjct: 93850 tcctgcgccagctcggagatctcgc 93874
>gb|AC107754.9| Mus musculus chromosome 7, clone RP23-231J2, complete sequence Length = 171637 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 atatttttcatgacctaca 58 ||||||||||||||||||| Sbjct: 163789 atatttttcatgacctaca 163807
>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence Length = 164298 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 atatttttcatgacctaca 58 ||||||||||||||||||| Sbjct: 3630 atatttttcatgacctaca 3648
>ref|XM_748866.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g06740) partial mRNA Length = 2154 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 gcgtaaggtgttgactcga 107 ||||||||||||||||||| Sbjct: 921 gcgtaaggtgttgactcga 903
>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence Length = 212949 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ggcagatatttttcatgac 53 ||||||||||||||||||| Sbjct: 18652 ggcagatatttttcatgac 18634
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 5 gcgccagctcggagatctcgccg 27 |||||||||||| |||||||||| Sbjct: 2656055 gcgccagctcggtgatctcgccg 2656033
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 40 atatttttcatgacctacacgag 62 ||||||||||||||| ||||||| Sbjct: 3066123 atatttttcatgaccgacacgag 3066145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 691,938 Number of Sequences: 3902068 Number of extensions: 691938 Number of successful extensions: 41732 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41639 Number of HSP's gapped (non-prelim): 93 length of query: 128 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 107 effective length of database: 17,151,101,840 effective search space: 1835167896880 effective search space used: 1835167896880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)