ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal41i12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK120865.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 1e-34
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 3e-20
3dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic D... 105 3e-20
4gb|AC107754.9| Mus musculus chromosome 7, clone RP23-231J2, comp... 38 6.0
5gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, com... 38 6.0
6ref|XM_748866.1| Aspergillus fumigatus Af293 hypothetical protei... 38 6.0
7gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosom... 38 6.0
8dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 6.0
9dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 38 6.0

>dbj|AK120865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025D04, full
           insert sequence
          Length = 4581

 Score =  153 bits (77), Expect = 1e-34
 Identities = 115/128 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgcgccagctcggagatctcgccgaatttgcggcagatatttttcatgacctacacg 60
           ||||||||||||||||||||||||| |||||||| |||||| ||||||| ||| |||| |
Sbjct: 505 tcctgcgccagctcggagatctcgcggaatttgcagcagatgtttttcacgacttacatg 564

                                                                       
Query: 61  agcaagttataactacatcgtctagggggcgtaaggtgttgactcgagtncagaacattg 120
           |||||||||||||||||||  |||||||||| |||||| |||||||||| |||||||| |
Sbjct: 565 agcaagttataactacatctgctagggggcgcaaggtgctgactcgagtacagaacatcg 624

                   
Query: 121 aagcagca 128
           | ||||||
Sbjct: 625 aggcagca 632



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 3e-20
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                           
Query: 29      atttgcggcagatatttttcatgacctacacgagcaagttataactacatcgtctagggg 88
               |||||| |||||| ||||||| ||| |||| ||||||||||||||||||||  |||||||
Sbjct: 5891110 atttgcagcagatgtttttcacgacttacatgagcaagttataactacatctgctagggg 5891169

                                                       
Query: 89      gcgtaaggtgttgactcgagtncagaacattgaagcagca 128
               ||| |||||| |||||||||| |||||||| || ||||||
Sbjct: 5891170 gcgcaaggtgctgactcgagtacagaacatcgaggcagca 5891209



 Score = 50.1 bits (25), Expect = 0.002
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 1       tcctgcgccagctcggagatctcgc 25
               |||||||||||||||||||||||||
Sbjct: 5890109 tcctgcgccagctcggagatctcgc 5890133



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>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0016I09
          Length = 148517

 Score =  105 bits (53), Expect = 3e-20
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                         
Query: 29    atttgcggcagatatttttcatgacctacacgagcaagttataactacatcgtctagggg 88
             |||||| |||||| ||||||| ||| |||| ||||||||||||||||||||  |||||||
Sbjct: 94851 atttgcagcagatgtttttcacgacttacatgagcaagttataactacatctgctagggg 94910

                                                     
Query: 89    gcgtaaggtgttgactcgagtncagaacattgaagcagca 128
             ||| |||||| |||||||||| |||||||| || ||||||
Sbjct: 94911 gcgcaaggtgctgactcgagtacagaacatcgaggcagca 94950



 Score = 50.1 bits (25), Expect = 0.002
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 1     tcctgcgccagctcggagatctcgc 25
             |||||||||||||||||||||||||
Sbjct: 93850 tcctgcgccagctcggagatctcgc 93874



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>gb|AC107754.9| Mus musculus chromosome 7, clone RP23-231J2, complete sequence
          Length = 171637

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     atatttttcatgacctaca 58
              |||||||||||||||||||
Sbjct: 163789 atatttttcatgacctaca 163807



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>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence
          Length = 164298

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   atatttttcatgacctaca 58
            |||||||||||||||||||
Sbjct: 3630 atatttttcatgacctaca 3648



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>ref|XM_748866.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g06740)
           partial mRNA
          Length = 2154

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 89  gcgtaaggtgttgactcga 107
           |||||||||||||||||||
Sbjct: 921 gcgtaaggtgttgactcga 903



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>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence
          Length = 212949

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    ggcagatatttttcatgac 53
             |||||||||||||||||||
Sbjct: 18652 ggcagatatttttcatgac 18634



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 5       gcgccagctcggagatctcgccg 27
               |||||||||||| ||||||||||
Sbjct: 2656055 gcgccagctcggtgatctcgccg 2656033



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 40      atatttttcatgacctacacgag 62
               ||||||||||||||| |||||||
Sbjct: 3066123 atatttttcatgaccgacacgag 3066145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 691,938
Number of Sequences: 3902068
Number of extensions: 691938
Number of successful extensions: 41732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41639
Number of HSP's gapped (non-prelim): 93
length of query: 128
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 107
effective length of database: 17,151,101,840
effective search space: 1835167896880
effective search space used: 1835167896880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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