>AMP1A_ARATH (Q9SLN5) Methionine aminopeptidase 1A (EC 3.4.11.18) (MetAP 1A)|
           (MAP 1A) (Peptidase M 1A)
          Length = 398

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = +3

Query: 36  VAAECGHASQPLDACAARVPHRKAKAAALGEEATEPRAIARSMTEAXGWR-RLW------ 194
           V + CGH    L  CA  +PH  A+  A+G            M  A GWR R W      
Sbjct: 299 VRSYCGHGIGDLFHCAPNIPH-YARNKAVGVMKAGQTFTIEPMINAGGWRDRTWPDGWTA 357

Query: 195 VEAEGRTS 218
           V A+G+ S
Sbjct: 358 VTADGKRS 365

>DTD_AZOSE (Q5P951) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 152

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
 Frame = +3

Query: 78  CAARVPHRKAKAAALGEEATEPRAIARSMTEAXGWR--------RLWVEAEGRTSRSPST 233
           C ARV         +G          R  TEA G R        R++ +A+GR +RS   
Sbjct: 9   CEARVVVEGEVVGRIGRGLLVFLCAERGDTEAEGERLLVKLLKLRIFADAQGRMNRSVQD 68

Query: 234 IGGCYPAISEGRGLARVSVHRCCAPPNGGALAAATGRWSLGAWLRLLDVXRR 389
           +GG         GL  VS     A  +GG   + +G  +    LRL +V  R
Sbjct: 69  VGG---------GLLIVSQFTLAADASGGNRPSFSGAAAPADGLRLYEVFVR 111

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 98  SEGEGRRAW*RSDGAEGHRALYDGSGRLETPXGRGRG 208
           +EGEGR      DG EG R    G+G  E+  GR  G
Sbjct: 354 AEGEGRE-----DGGEGPRGAGGGAGESESESGRAEG 385

>RNPH_BIFLO (Q8G7I0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 248

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
 Frame = +3

Query: 18  NALAGGVAAECGHASQPLDACAARVPHRKAKAAALGEEATEPRAIARSMTEAXGWRRLWV 197
           +A  G V  ECG+      A       R  K + LG    E   + R+  E      +  
Sbjct: 29  DAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVRG 88

Query: 198 EAEGRTSRSPSTIGGCYPAISEGRGLARVSVHRCC--APPNGGALAAATGRWSLGAWLRL 371
           +  GRT      IG C   + + + L    +   C     +GG   A+      GA++ L
Sbjct: 89  KIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGGTRTASV----TGAYVAL 144

Query: 372 LD 377
           +D
Sbjct: 145 VD 146

>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast|
           precursor (EC 1.4.7.1) (Fd-GOGAT)
          Length = 1616

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +3

Query: 57  ASQPLDACAARVPHRKAKAAALGEEATEPRAIARSMTEAXGWRRLWVEAEGRTSRSPSTI 236
           A+ P  A    +P         G  A   R+  R+   +   RR WV A   +S S + +
Sbjct: 7   AAPPTPAALLPLPRAAPPLLLAGRAAAARRSRLRARGPSAAARRSWVVASAASSSSRAVV 66

Query: 237 GG 242
           GG
Sbjct: 67  GG 68

>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein|
           11)
          Length = 110

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 225 PSTIGGCYPAISEGRGLARVSVHRCCAPPNGGALAAATGRWSL 353
           P     C+PA+S   G +  S   CC P +GG  ++  G  SL
Sbjct: 34  PQCPAPCFPAVSSCCGPSSGS---CCGPSSGGCCSSGAGGCSL 73

>NDF1_CHICK (P79765) Neurogenic differentiation factor 1 (NeuroD1) (NeuroD)|
          Length = 357

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 361 HAPSDHLPVAAANAPPFGGAQQRCTL 284
           H P+  LP A A+A  F GA  RC L
Sbjct: 304 HYPAGPLPAAPAHAAVFSGAAARCEL 329

>CU79A_LOCMI (P45586) Cuticle protein 79, isoform A (LM-79A) (LM-ACP 79A)|
          Length = 131

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 337 VAAANAPPFGGAQQRCTLTLARPLPSEMAG*QPPIVEGLRLVRPSASTXRRL-QPXASVI 161
           V  A AP  G A    TL   R +P      QPP V   ++++P      RL QP A ++
Sbjct: 41  VGIAAAPAIGIAAAPATLVRTRVVPGPARLVQPPPVVQKQVIQPPPIVQTRLIQPPAQLV 100

Query: 160 E 158
           +
Sbjct: 101 Q 101

>LAPT_PASHA (P49618) Arginine-binding periplasmic protein precursor|
          Length = 237

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 18  NALAGGVAAECGHASQPLDACAARVPHRKAKAAALGEEATEPR 146
           NA+   + A C   SQP D+    +  ++  AA  G   TEPR
Sbjct: 49  NAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPR 91

>AKR1_CANGA (Q6FJ70) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1)
          Length = 763

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +3

Query: 9   PSPNALAGGVAAECGHASQPLDACAARVPHRKAKAAALGEEATEPRAIARSMTEAXGWRR 188
           P P    G + A  G     L  C A +      A      +T  R++  S++   GWRR
Sbjct: 641 PKPRTCMGMICAVTG-----LHQCVAIIKDTFGIARHGSSRSTNTRSLLSSISTDYGWRR 695

Query: 189 LWVE 200
            W +
Sbjct: 696 NWCD 699

>RPOD_MYCTU (P0A602) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 528

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +3

Query: 3   GEPSPNALAGGVAAECGHASQPLDACAARVPHRKAKAAALGEEATEPRA 149
           G P         A     AS P D   + +P RK +AAA    A  P A
Sbjct: 43  GSPPAKRATKPAARSVKPASAPQDTTTSTIPKRKTRAAAKSAAAKAPSA 91

>RPOD_MYCBO (P0A603) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 528

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +3

Query: 3   GEPSPNALAGGVAAECGHASQPLDACAARVPHRKAKAAALGEEATEPRA 149
           G P         A     AS P D   + +P RK +AAA    A  P A
Sbjct: 43  GSPPAKRATKPAARSVKPASAPQDTTTSTIPKRKTRAAAKSAAAKAPSA 91

>CPHB_ANAVT (O86108) Cyanophycinase (EC 3.-.-.-)|
          Length = 298

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 126 EEATEPRAIARSMTEAXGWRRLWVEAEGRTSRSPSTIGGCYPAISEGRGLARVSV 290
           E+    R I R+     G  + ++      SR P+ IGG Y  I E  G  +V +
Sbjct: 39  EDKVHGREILRTFFGRAGASKAYITIIPSASREPAIIGGRYIRIFEEMGAEKVEI 93

>CPHB_ANASP (P58562) Cyanophycinase (EC 3.-.-.-)|
          Length = 298

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 126 EEATEPRAIARSMTEAXGWRRLWVEAEGRTSRSPSTIGGCYPAISEGRGLARVSV 290
           E+    R I R+     G  + ++      SR P+ IGG Y  I E  G  +V +
Sbjct: 39  EDKVHGREILRTFFGRAGASKAYITIIPSASREPAIIGGRYIRIFEEMGAEKVEI 93

>GSHB_PSEPK (Q88D35) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase)|
           (GSH synthetase) (GSH-S) (GSHase)
          Length = 317

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 63  QPLDACAARVPHRKAKAAALGEEATEPRAIARSMTEAXGW 182
           +P+D C AR+P   A     G  A   R  AR +TE   W
Sbjct: 218 EPVDYCLARIP---ASGETRGNLAAGGRGEARPLTERDRW 254

>ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2)|
          Length = 610

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 355 PSDHLPVAAANAPPFGGAQQRCTLTLARPLPSEMAG-*QPPIVEGL 221
           PS ++      +PP GG      LTL  P+ S + G   PP+ E L
Sbjct: 44  PSPYVEACQDYSPPHGGEISHGALTLYSPVSSPVLGYTHPPVSESL 89

>RPC4_MOUSE (Q91WD1) DNA-directed RNA polymerase III 47 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase C subunit 4) (RPC4)
          Length = 398

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 201 AEGRTSRSPSTIGGCYPAISEGRGLARVSVHRCCAPP 311
           +EG  +  PS  GG  P +S GRGL    + R  APP
Sbjct: 2   SEGNAAGEPSNPGGPRPLLSGGRGL----IGRRPAPP 34

>T55BB_BRARE (Q66I51) Transmembrane protein 55B-B (EC 3.1.3.-) (Type I|
           phosphatidylinositol 4,5-bisphosphate 4-phosphatase-B)
           (PtdIns-4,5-P2 4-Ptase I-B)
          Length = 262

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = +3

Query: 3   GEPSPNALAGGVAAECGHASQPL------DACAARVPHRKAKAAALGEEATEPRAI 152
           G  SPN    G    CGH ++        D   AR PH + K +++G+     R++
Sbjct: 144 GAGSPNPQPTGARVSCGHCAKTFLWTEFTDRTLARCPHCR-KVSSIGQRYPRKRSL 198

>ARGJ_CORJK (Q4JW03) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 405

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 186 RLWVEAEGRTSRSPSTIGGC---YPAISEGRGLARVSVHRCC---APPNGGALAAATG 341
           +L  +AEG T R   T+GG      A +  R + R ++ +C    + PN G + AA G
Sbjct: 275 QLQADAEGVTKRVSITVGGAETDADAQTAARVIGRDNLFKCAMFGSDPNWGRVLAAVG 332

>Y1435_DEIRA (Q9RUF1) Hypothetical UPF0052 protein DR1435|
          Length = 467

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 222 SPSTIGGCYPAISEGRGLARVSVHR 296
           +P  +  CY A+SE   LAR+ +HR
Sbjct: 195 APGDLTDCYAALSESPALARLLLHR 219

>T55BA_BRARE (Q32PR0) Transmembrane protein 55B-A (EC 3.1.3.-) (Type I|
           phosphatidylinositol 4,5-bisphosphate 4-phosphatase-A)
           (PtdIns-4,5-P2 4-Ptase I-A)
          Length = 270

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = +3

Query: 3   GEPSPNALAGGVAAECGHASQPL------DACAARVPHRKAKAAALGEEATEPRAI 152
           G  SP+    G    CGH S         D   AR PH + K +++G+     R++
Sbjct: 152 GPASPDPQPAGARVSCGHCSNTFLWTEFTDRTLARCPHCR-KVSSIGQRYPRRRSL 206

>TNSB_ECOLI (P13989) Transposon Tn7 transposition protein tnsB|
          Length = 702

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -3

Query: 337 VAAANAPPFGGAQQRCTLTLARPLPSEMAG*QPPIVEGLRLVRPSASTXRRLQPXASVIE 158
           V   +APP  G  +    +  R L +E     P IVEG R ++    T  RL    SV E
Sbjct: 379 VRVESAPPRRGDAKGIVESTFRTLQAEFKSFAPGIVEGSR-IKSHGETDYRLDASLSVFE 437

>GBRA4_MOUSE (Q9D6F4) Gamma-aminobutyric-acid receptor alpha-4 subunit precursor|
           (GABA(A) receptor)
          Length = 552

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 12  SPNALAGGVAAEC-GHASQPLDACAARVPHRKAKAAALGEEATEP 143
           SPN  +   AAE    A++ L + A+  PH   + A+LG  +T P
Sbjct: 431 SPNPFSRANAAETMSAAARGLSSAASPSPHGTLRPASLGSASTRP 475

>JIP1_HUMAN (Q9UQF2) C-jun-amino-terminal kinase-interacting protein 1|
           (JNK-interacting protein 1) (JIP-1) (JNK MAP kinase
           scaffold protein 1) (Islet-brain 1) (IB-1)
           (Mitogen-activated protein kinase 8-interacting protein
           1)
          Length = 711

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 129 EATEPRAIARSMTEAXGWRRLWVEAEGRTSRSPSTIGGCYPAIS-EGRGLARVSVHRCCA 305
           +A EP +     TE+    R+ V ++   +  PST G  +P+IS E  G   +S      
Sbjct: 291 DAAEPTSAFLPPTES----RMSVSSDPDPAAYPSTAGRPHPSISEEEEGFDCLSSPERAE 346

Query: 306 PPNGG 320
           PP GG
Sbjct: 347 PPGGG 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,548,836
Number of Sequences: 219361
Number of extensions: 1031934
Number of successful extensions: 3189
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3188
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)