ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal41h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RECO_PSEU2 (Q4ZPE3) DNA repair protein recO (Recombination prote... 28 9.3
2RECO_PSE14 (Q48EV5) DNA repair protein recO (Recombination prote... 28 9.3

>RECO_PSEU2 (Q4ZPE3) DNA repair protein recO (Recombination protein O)|
          Length = 227

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -1

Query: 127 VHLAQDGLVRGALLLAMVEAD 65
           V+L Q GL +GA LLAM EAD
Sbjct: 171 VYLLQPGLFQGAELLAMSEAD 191



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>RECO_PSE14 (Q48EV5) DNA repair protein recO (Recombination protein O)|
          Length = 227

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -1

Query: 127 VHLAQDGLVRGALLLAMVEAD 65
           V+L Q GL +GA LLAM EAD
Sbjct: 171 VYLLQPGLFQGAELLAMSEAD 191


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.144    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,178,061
Number of Sequences: 219361
Number of extensions: 153915
Number of successful extensions: 278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 80,573,946
effective HSP length: 17
effective length of database: 76,844,809
effective search space used: 1844275416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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