Clone Information

BLAST Search Result

Clone Name	baal41h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla...	271	1e-72
2	CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast...	98	2e-20
3	CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla...	97	5e-20
4	CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloropla...	94	4e-19
5	CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chlorop...	74	4e-13
6	CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, ch...	70	7e-12
7	CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, ch...	66	7e-11
8	CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl...	62	1e-09
9	CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast...	60	7e-09
10	CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ...	59	2e-08
11	CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl...	59	2e-08
12	CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla...	58	3e-08
13	CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl...	58	3e-08
14	CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ...	57	3e-08
15	CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro...	57	4e-08
16	CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla...	57	4e-08
17	CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty...	56	8e-08
18	CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe...	56	8e-08
19	CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla...	55	1e-07
20	CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop...	55	1e-07
21	CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla...	55	2e-07
22	CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl...	55	2e-07
23	CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast...	54	3e-07
24	CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast...	54	4e-07
25	CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla...	54	4e-07
26	CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla...	54	4e-07
27	CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl...	54	4e-07
28	CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl...	54	4e-07
29	CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl...	54	5e-07
30	LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins pre...	54	5e-07
31	CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chlo...	53	6e-07
32	CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast...	53	6e-07
33	CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast...	53	8e-07
34	CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe...	53	8e-07
35	CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl...	52	1e-06
36	CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla...	52	1e-06
37	CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl...	52	1e-06
38	CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla...	52	1e-06
39	CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ...	52	1e-06
40	CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast...	52	1e-06
41	CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type...	52	1e-06
42	CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla...	52	1e-06
43	CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl...	52	1e-06
44	CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl...	52	1e-06
45	CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe...	52	1e-06
46	CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl...	52	1e-06
47	CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl...	52	1e-06
48	CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla...	52	1e-06
49	CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ...	52	2e-06
50	CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl...	52	2e-06
51	CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla...	51	2e-06
52	CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla...	51	3e-06
53	CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chlo...	51	3e-06
54	CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast...	51	3e-06
55	CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo...	50	4e-06
56	CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast...	50	4e-06
57	CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop...	50	5e-06
58	CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla...	50	7e-06
59	CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl...	49	9e-06
60	CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ...	49	9e-06
61	LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins pre...	49	1e-05
62	CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29	48	3e-05
63	CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type...	48	3e-05
64	CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chlo...	48	3e-05
65	CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop...	48	3e-05
66	CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type...	47	4e-05
67	CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl...	47	5e-05
68	CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop...	47	5e-05
69	CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type...	46	8e-05
70	CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chlorop...	46	1e-04
71	FCP_ISOGA (Q39709) Fucoxanthin-chlorophyll a-c binding protein, ...	42	0.001
72	CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl...	40	0.004
73	CCAC_AMPCA (P55738) Caroteno-chlorophyll a-c binding protein (Fr...	37	0.048
74	CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII typ...	34	0.31
75	FCP_ODOSI (Q42395) Fucoxanthin-chlorophyll a-c binding protein, ...	32	1.2
76	MOD5_HUMAN (Q9H3H1) tRNA isopentenyltransferase, mitochondrial p...	32	1.5
77	CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial pr...	31	2.6
78	GUC2D_HUMAN (Q02846) Retinal guanylyl cyclase 1 precursor (EC 4....	30	4.5
79	FCPE_MACPY (Q40301) Fucoxanthin-chlorophyll a-c binding protein ...	30	4.5
80	CILP2_HUMAN (Q8IUL8) Cartilage intermediate layer protein 2 prec...	30	4.5
81	FCPF_MACPY (Q40300) Fucoxanthin-chlorophyll a-c binding protein ...	30	5.8
82	FIBA_BOVIN (P02672) Fibrinogen alpha chain precursor [Contains: ...	30	5.8
83	NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor (Na(+)/Ca...	30	5.8
84	GUC2D_CANFA (O19179) Retinal guanylyl cyclase 1 precursor (EC 4....	30	5.8
85	AROC_METKA (Q8TXN1) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	30	5.8
86	NKX61_MESAU (Q60554) Homeobox protein Nkx-6.1	25	9.8
87	FCPD_PHATR (Q08587) Fucoxanthin-chlorophyll a-c binding protein ...	29	10.0
88	FCPC_PHATR (Q08586) Fucoxanthin-chlorophyll a-c binding protein ...	29	10.0
89	GUC2D_BOVIN (P55203) Retinal guanylyl cyclase 1 precursor (EC 4....	29	10.0
90	SYE1_WOLPM (Q73HV5) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Gl...	29	10.0
91	NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor (Na(+)/...	29	10.0
92	TM14C_HUMAN (Q9P0S9) Transmembrane protein 14C	29	10.0
93	KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H...	29	10.0
94	ELI5_HORVU (P14895) High molecular mass early light-inducible pr...	29	10.0
95	VL2_HPV19 (P36752) Minor capsid protein L2	29	10.0

>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score =  271 bits (693), Expect = 1e-72
 Identities = 125/156 (80%), Positives = 134/156 (85%)
 Frame = +3

Query: 159 FVVRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWL 338
           FVVRA+S+PP KQ  NRQLWFASKQSL+YLDG LPGDFGFDPLGLSDPEGTGGFIEP+WL
Sbjct: 37  FVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWL 96

Query: 339 AYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLF 518
           AYGE+ NGR AM+G  G IAPE LGK GL+P ETA+ WFQ G IPPAGTY YWAD YTLF
Sbjct: 97  AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLF 156

Query: 519 VFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYL 626
           V EMAL+GFAEHRR QDW  PGSMGKQYFLGLEK L
Sbjct: 157 VLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGL 192

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>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 56/128 (43%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
 Frame = +3

Query: 204 NRQLWFASKQSLTYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTAMMG 380
           +R LWF       +LDG+LPGDFGFDPLGL SDPE        +W A  E+ + R AM+G
Sbjct: 64  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLG 117

Query: 381 VVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRR 560
             G+  PE L K+G++   +   W+       AG  +Y+ D  TLFV E+ LIG+AE RR
Sbjct: 118 AAGIFIPEFLTKIGVLNTPS---WY------TAGEQEYFTDTTTLFVIELVLIGWAEGRR 168

Query: 561 LQDWYNPG 584
             D   PG
Sbjct: 169 WADIIKPG 176



 Score = 33.5 bits (75), Expect = 0.53
 Identities = 22/51 (43%), Positives = 27/51 (52%)
 Frame = +3

Query: 237 LTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LT  D   PG   FDPLG     G+G   + + L   EI NGR AM+ V+G
Sbjct: 189 LTGTDVGYPGGLWFDPLGW----GSGSPAKIKELRTKEIKNGRLAMLAVMG 235

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>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 96.7 bits (239), Expect = 5e-20
 Identities = 56/140 (40%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
 Frame = +3

Query: 168 RASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAY 344
           R++++     + +R LWF       +LDG+LPGDFGFDPLGL SDPE        RW   
Sbjct: 52  RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQ 105

Query: 345 GEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVF 524
            E+ + R AM+G  G+  PE L K+G++   +   W+       AG  +Y+ D  TLF+ 
Sbjct: 106 AELVHCRWAMLGAAGIFIPELLTKIGILNTPS---WY------TAGEQEYFTDTTTLFIV 156

Query: 525 EMALIGFAEHRRLQDWYNPG 584
           E+ LIG+AE RR  D   PG
Sbjct: 157 ELVLIGWAEGRRWADIIKPG 176



 Score = 33.5 bits (75), Expect = 0.53
 Identities = 22/51 (43%), Positives = 27/51 (52%)
 Frame = +3

Query: 237 LTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LT  D   PG   FDPLG     G+G   + + L   EI NGR AM+ V+G
Sbjct: 189 LTGTDVGYPGGLWFDPLGW----GSGSPAKIKELRTKEIKNGRLAMLAVMG 235

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>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 60/138 (43%), Positives = 73/138 (52%), Gaps = 7/138 (5%)
 Frame = +3

Query: 216 WFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGM 392
           W     S  YL G+L GD GFDPLGL+ DPE        +W    E+ NGR AM+GV GM
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGM 110

Query: 393 IAPEALGKVGLV-PPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQD 569
           + PE   K+G++  PE    W+       AG  QY+A   TLFV E  L  + E RR QD
Sbjct: 111 LLPEVFTKIGIINVPE----WYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQD 160

Query: 570 WYNPGSMG-----KQYFL 608
             NPGS+      KQY L
Sbjct: 161 IKNPGSVNQDPIFKQYSL 178

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>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast|
           precursor
          Length = 261

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
 Frame = +3

Query: 243 YLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 419
           +LDG+LPGDFGFDPLGL  DP     F+  +W    E+ +GR AM+ V+G+   +A    
Sbjct: 75  WLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGIFVGQAW--- 125

Query: 420 GLVPPETAIPWFQAGAIPPAGTYQYWADPY---TLFVFEMALIGFAEHRRLQDWYNPGSM 590
                 T IPWF+AGA P A        P+   TL   ++ L+G+ E +R  D+++P S 
Sbjct: 126 ------TGIPWFEAGADPGA------VAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ 173

Query: 591 GKQY 602
             ++
Sbjct: 174 SVEW 177

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>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast|
           precursor (CAB-10A) (LHCP)
          Length = 256

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
 Frame = +3

Query: 243 YLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 419
           +LDG+LPGD+GFDPLGL  DP     F+  +W    E+ +GR AM  V+G+   +A    
Sbjct: 70  WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGIFVGQAW--- 120

Query: 420 GLVPPETAIPWFQAGAIPPA-GTYQYWADPYTLFVFEMALIGFAEHRRLQDWYNPGSMGK 596
                 + IPWF+AGA P A   + +     TL   ++ L+G+ E +R  D+++P S   
Sbjct: 121 ------SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSV 170

Query: 597 QY 602
           ++
Sbjct: 171 EW 172

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>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast|
           precursor (CAB-10B) (LHCP)
          Length = 256

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
 Frame = +3

Query: 159 FVVRASSSPPAKQNDNRQLWFASKQS------LTYLDGTLPGDFGFDPLGL-SDPEGTGG 317
           FVV A++  P K       W  + +S        +LDG+LPGDFGFDPLGL  DP     
Sbjct: 42  FVVAAAAVAPKKS------WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP----A 91

Query: 318 FIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPA-GTYQY 494
           F+  +W    E+ +GR AM  V+G+   +A          + IPWF+AGA P A   + +
Sbjct: 92  FL--KWYREAELIHGRWAMAAVLGIFVGQAW---------SGIPWFEAGADPGAIAPFSF 140

Query: 495 WADPYTLFVFEMALIGFAEHRRLQDWYNPGS 587
                +L   ++ L+G+ E +R  D+++  S
Sbjct: 141 G----SLLGTQLLLMGWVESKRWVDFFDNDS 167

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>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
 Frame = +3

Query: 216 WFASKQSLTYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGM 392
           W   +   +YLDG+ PGDFGFD LGL + P     + E       E+ + R AM+ V G+
Sbjct: 49  WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 102

Query: 393 IAPEALGKVGLVPPE--TAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRR 560
           I PEALG    V  +   AIP  QA  +   G    W    T+   E   I F EH+R
Sbjct: 103 IVPEALGLGNWVKAQEWAAIPGGQATYL---GQPVPWGTLPTILAIEFLAIAFVEHQR 157

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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q+ +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 60  SEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHSRWAMLGALGCVFP 113

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K G+   E    WF+AGA I   G   Y  +P          ++  ++ L+GF E 
Sbjct: 114 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEG 171

Query: 555 RRL 563
            R+
Sbjct: 172 YRV 174



 Score = 30.4 bits (67), Expect = 4.5
 Identities = 22/48 (45%), Positives = 25/48 (52%)
 Frame = +3

Query: 246 LDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LD   PG   FDPLGL+D   T  F E   L   E+ NGR AM  + G
Sbjct: 183 LDKVYPGG-AFDPLGLADDPDT--FAE---LKVKELKNGRLAMFSMFG 224

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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S Q+ +YL+G  PGD+G+D  GLS DPE    F   R L   E+ +GR AM+G +G + P
Sbjct: 63  SAQTPSYLNGEFPGDYGWDTAGLSADPE---AFARNRAL---EVIHGRWAMLGALGCVFP 116

Query: 402 EALGK-VGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAE 551
           E L K VG+   E    WF+AG+ I   G   Y  +P          +  F++ L+G  E
Sbjct: 117 EVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVE 174

Query: 552 HRRLQDWYNPGS-----MGKQYF--LGL 614
             R+      G       G QYF  LGL
Sbjct: 175 GFRINGLDGVGEGNDLYPGGQYFDPLGL 202



 Score = 30.0 bits (66), Expect = 5.8
 Identities = 21/43 (48%), Positives = 23/43 (53%)
 Frame = +3

Query: 261 PGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           PG   FDPLGL+D   T  F E   L   EI NGR AM  + G
Sbjct: 192 PGGQYFDPLGLADDPVT--FAE---LKVKEIKNGRLAMFSMFG 229

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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S Q+ +YL+G  PGD+G+D  GLS DPE    F + R L   E+ +GR AM+G +G I P
Sbjct: 60  SAQTPSYLNGEFPGDYGWDTAGLSADPE---AFAKNRAL---EVIHGRWAMLGALGCIFP 113

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K   V  +  + WF+AG+ I   G   Y  +P          +  F++ L+G  E 
Sbjct: 114 EVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 172

Query: 555 RRLQDWYNPGS-----MGKQYF--LGL 614
            R+      G       G QYF  LGL
Sbjct: 173 FRINGLPGVGEGNDLYPGGQYFDPLGL 199



 Score = 30.4 bits (67), Expect = 4.5
 Identities = 21/43 (48%), Positives = 23/43 (53%)
 Frame = +3

Query: 261 PGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           PG   FDPLGL+D   T  F E   L   EI NGR AM  + G
Sbjct: 189 PGGQYFDPLGLADDPTT--FAE---LKVKEIKNGRLAMFSMFG 226

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>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q+ +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 34  SEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFP 87

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+GF E 
Sbjct: 88  EILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEG 145

Query: 555 RRL 563
            R+
Sbjct: 146 YRV 148

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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q+ +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFP 115

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+GF E 
Sbjct: 116 EILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEG 173

Query: 555 RRL 563
            R+
Sbjct: 174 YRV 176

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>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q+ +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G I P
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCIFP 114

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K G+   E    WF+AGA I   G   Y  +P          ++  ++ L+G  E 
Sbjct: 115 ELLSKNGVQFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEG 172

Query: 555 RRL 563
            R+
Sbjct: 173 YRV 175

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>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
 Frame = +3

Query: 243 YLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 419
           YL+G + GD+G+DP GL   PE        ++ A+ E+ + R AM+G  G I PEAL K 
Sbjct: 84  YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKY 137

Query: 420 GLVPPETAIPWFQAGAIPPAG-TYQYWAD--PYTL---FVFEMALIGFAEHRRL------ 563
           G      A+ WF+ GA+   G T  Y+    P  L    V E+ L+G AE+ R+      
Sbjct: 138 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDF 196

Query: 564 QDWYNPG 584
           +D  +PG
Sbjct: 197 EDKLHPG 203

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>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q+ +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFP 115

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+GF E 
Sbjct: 116 EILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEG 173

Query: 555 RRL 563
            R+
Sbjct: 174 YRV 176

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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = +3

Query: 165 VRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLA 341
           V +SSSP    +  + L   S +S +YL G  PGD+G+D  GLS DPE    F + R L 
Sbjct: 5   VASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL- 60

Query: 342 YGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
             E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 61  --EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 112

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>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
 Frame = +3

Query: 168 RASSSPPAKQNDNRQLWFASKQSL----------TYLDGTLPGDFGFDPLGLS-DPEGTG 314
           R     P  +  +  +W+ S + L          +YL G  PGD+G+D  GLS DPE   
Sbjct: 33  RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPE--- 89

Query: 315 GFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQ 491
            F + R L   E+ + R AM+G +G + PE L K G+   E    WF+AG+ I   G   
Sbjct: 90  TFAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLD 144

Query: 492 YWADP 506
           Y  +P
Sbjct: 145 YLGNP 149

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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F + R L   E+ +GR AM+G +G + P
Sbjct: 61  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHGRWAMLGALGCVFP 114

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+ G+ I   G  QY  +P
Sbjct: 115 ELLARNGVKFGEAV--WFKKGSQIFSEGGLQYLGNP 148

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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S Q  +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 62  SDQIPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 115

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+GF E 
Sbjct: 116 EILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173

Query: 555 RRL 563
            R+
Sbjct: 174 YRV 176

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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q  +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G   P
Sbjct: 62  SEQIPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHSRWAMLGALGCTFP 115

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+GF E 
Sbjct: 116 ELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEG 173

Query: 555 RRL 563
            R+
Sbjct: 174 YRV 176

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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
 Frame = +3

Query: 171 ASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYG 347
           ASSSP    +  + L   S +S +YL G  PGD+G+D  GLS DPE    F + R L   
Sbjct: 44  ASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL--- 97

Query: 348 EIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 98  EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 149

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>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q+ +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 114

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L K G+   E    WF+AG+ I   G   Y  +P
Sbjct: 115 ELLAKNGVKFGEAV--WFKAGSQIFQEGGLDYLGNP 148

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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
 Frame = +3

Query: 165 VRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLA 341
           V +S SP    +  + L   S +S +YL G  PGD+G+D  GLS DPE    F + R L 
Sbjct: 45  VASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFSKNREL- 100

Query: 342 YGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
             E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 101 --EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 152

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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
 Frame = +3

Query: 171 ASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYG 347
           +SSSP    N  + L   S +S +YL G  PGD+G+D  GLS DPE    F + R L   
Sbjct: 46  SSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL--- 99

Query: 348 EIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E+ + R AM+G +G + PE L + G+   E    WF+ G+ I   G   Y  +P
Sbjct: 100 EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKGGSQIFSQGGLDYLGNP 151

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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
 Frame = +3

Query: 165 VRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLA 341
           V AS SP    +  + L   S +  +YL G  PGD+G+D  GLS DPE    F + R L 
Sbjct: 39  VAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL- 94

Query: 342 YGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP---- 506
             E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P    
Sbjct: 95  --EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIH 150

Query: 507 ----YTLFVFEMALIGFAEHRRL 563
                 ++  ++ L+G  E  R+
Sbjct: 151 AQSILAIWACQVVLMGAVEGYRI 173

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>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+Q+ +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFP 115

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L K G+   E    WF+AG+ I   G   Y  +P
Sbjct: 116 EILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 149

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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
 Frame = +3

Query: 165 VRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLA 341
           V +S SP    +  + L   S +S +YL G  PGD+G+D  GLS DPE    F + R L 
Sbjct: 46  VASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFSKNREL- 101

Query: 342 YGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
             E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 102 --EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 153

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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
 Frame = +3

Query: 174 SSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGE 350
           SSSP    +  + L   S +S +YL G  PGD+G+D  GLS DPE    F + R L   E
Sbjct: 45  SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---E 98

Query: 351 IFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP------- 506
           + + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P       
Sbjct: 99  VIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQS 156

Query: 507 -YTLFVFEMALIGFAEHRRL 563
              ++  ++ L+G  E  R+
Sbjct: 157 ILAIWACQVVLMGAVEGYRI 176

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>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor|
           [Contains: LH38 protein 1; LH38 protein 2; LH38 protein
           3] (Fragment)
          Length = 530

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
 Frame = +3

Query: 213 LWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LWF + +    L G  P D GFDPL L+ DP+     +  R +   E+F+GR AM+  VG
Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPD-----VYAR-MRVAEVFHGRLAMLCTVG 242

Query: 390 MIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQD 569
            I PE LGK           WF+AG            D   L    MA+    E+ R Q 
Sbjct: 243 CIVPELLGKGA---------WFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQG 284

Query: 570 WYN--PGSMGKQY 602
            +N   G + + Y
Sbjct: 285 GFNWQKGELDRSY 297



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
 Frame = +3

Query: 213 LWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LWF +  + ++L+G   GD GFDP GL+ DP+          +   E+++GR AM+ VVG
Sbjct: 4   LWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTF------ERMRIAEVYHGRLAMLAVVG 57

Query: 390 MIAPEALGK---------VGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLF 518
            + P+ LGK          G+   E AI     G    A   +  +DP T++
Sbjct: 58  ALVPDYLGKGIWYEAAQNAGIGLKEVAIFTAAYGVFEVARGVKENSDPTTIY 109



 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 201 DNRQLWFASKQSLTYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTAMM 377
           + R+LWF +     YL G   GD GFDP GL +DP      +    +   E+F+ R +M+
Sbjct: 369 EERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADP------VTFERMQVAEVFHCRLSML 422

Query: 378 GVVGMIAPEALG 413
            +VG + PE LG
Sbjct: 423 ALVGCLVPELLG 434

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>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast|
           precursor (LHCII protein 4.2) (LHCB4.2)
          Length = 287

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 43/162 (26%)
 Frame = +3

Query: 204 NRQLWFASKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGF--------------------- 320
           +R LWF   +S  YLDG+L GD+GFDP GL  P     F                     
Sbjct: 51  DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTR 110

Query: 321 ---IEPR---WLAYGEIF-----------NGRTAMMGVVGMIAPEALGKVGLVPPETAIP 449
              ++P+   +  Y E+F           +GR AM+  +G I  E L         T + 
Sbjct: 111 TEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL---------TGVT 161

Query: 450 WFQAGAIPPAGTYQYWADPY-----TLFVFEMALIGFAEHRR 560
           W  AG +       Y   P      TL   E+ +IG+ E +R
Sbjct: 162 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 203

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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
 Frame = +3

Query: 174 SSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGE 350
           SSSP    +  + L   S +S +YL G  PGD+G+D  GLS DPE    F + R L   E
Sbjct: 47  SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---E 100

Query: 351 IFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           + + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 101 VIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 151

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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
 Frame = +3

Query: 189 AKQNDNRQLWFASKQSL----------TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRW 335
           AKQ  +   W+ S + L          +YL G  PGD+G+D  GLS DPE    F + R 
Sbjct: 41  AKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNRE 97

Query: 336 LAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP-- 506
           L   E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P  
Sbjct: 98  L---EVIHCRWAMLGALGCVFPELLARNGVKFGEAG--WFKAGSQIFSDGGLDYLGNPSL 152

Query: 507 ------YTLFVFEMALIGFAEHRRL 563
                   ++  ++ L+G  E  R+
Sbjct: 153 VHAQSLLAIWACQVVLMGAVEGYRI 177

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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
 Frame = +3

Query: 171 ASSSPPAKQNDNRQLWFA--SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLA 341
           AS+S       +R L+    S +  +YL G  PGD+G+D  GLS DPE    F + R L 
Sbjct: 51  ASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---NFAKNREL- 106

Query: 342 YGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
             E+ + R AM+G +G + PE L + G+   E    WF+AGA I   G   Y  +P
Sbjct: 107 --EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNP 158

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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 64  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 117

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L + G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+G  E 
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 175

Query: 555 RRL 563
            R+
Sbjct: 176 YRI 178

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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 63  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHSRWAMLGALGCVFP 116

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 117 ELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNP 150

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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 63  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHSRWAMLGALGCVFP 116

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 117 ELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNP 150

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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
 Frame = +3

Query: 165 VRASSSPPAKQNDNRQLWFASKQSL----------TYLDGTLPGDFGFDPLGLS-DPEGT 311
           +R +++ P     +   W+ + + L          +YL G  PGD+G+D  GLS DPE  
Sbjct: 32  MRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-- 89

Query: 312 GGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTY 488
             F + R L   E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G  
Sbjct: 90  -TFAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGL 143

Query: 489 QYWADP--------YTLFVFEMALIGFAEHRRL 563
            Y  +P          ++  ++ L+G  E  R+
Sbjct: 144 DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 176

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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S ++ +YL+G   GD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + P
Sbjct: 65  SGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTP 118

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L K G+   E    WF+AGA I   G   Y  +P
Sbjct: 119 ELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNP 152



 Score = 30.4 bits (67), Expect = 4.5
 Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
 Frame = +3

Query: 249 DGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKVG-- 422
           D   PG   FDPLGL+D   T  F E   L   EI NGR AM  + G      +   G  
Sbjct: 189 DPIYPGG-SFDPLGLADDPDT--FAE---LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242

Query: 423 ------LVPPETAIPWFQAGAIPP 476
                 L  P     W  A   PP
Sbjct: 243 ENLNDHLADPVANNAWAYAPTSPP 266

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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S ++ +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 61  SGEAPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFP 114

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 115 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 148

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>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
 Frame = +3

Query: 204 NRQLW---FASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTA 371
           NR  W   ++   +  YL G  PGD+G+D  GLS DPE    + E       E+ + R A
Sbjct: 40  NRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWA 93

Query: 372 MMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           M+G +G   PE L K G    E    WF+AGA I   G   Y  +P
Sbjct: 94  MLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNP 137



 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/48 (45%), Positives = 25/48 (52%)
 Frame = +3

Query: 246 LDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LD   PG+  FDPLGL+D   T  F E   L   EI NGR A   + G
Sbjct: 173 LDPLYPGE-SFDPLGLADDPDT--FAE---LKVKEIKNGRLASFSMFG 214

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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 63  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 116

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 117 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 150

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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 63  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 116

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 117 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 150

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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + PE L +
Sbjct: 80  SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPELLAR 133

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
            G+   E    WF+AGA I   G   Y   P
Sbjct: 134 NGVKFGEAV--WFKAGAQIFSEGGLDYLGSP 162

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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + PE L +
Sbjct: 80  SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPELLAR 133

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
            G+   E    WF+AGA I   G   Y   P
Sbjct: 134 NGVKFGEAV--WFKAGAQIFSEGGLDYLGSP 162

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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 64  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 117

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 151

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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S +S +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 64  SGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 117

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 151

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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + PE L +
Sbjct: 63  SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPELLAR 116

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEHRRL 563
            G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+G  E  R+
Sbjct: 117 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 172

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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + PE L +
Sbjct: 57  SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPELLSR 110

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEHRRL 563
            G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+G  E  R+
Sbjct: 111 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 166

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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
 Frame = +3

Query: 171 ASSSPPAKQNDNRQLWFA--SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLA 341
           A+SS       +R L+    S +  +YL G  PGD+G+D  GLS DPE    F + R L 
Sbjct: 42  AASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL- 97

Query: 342 YGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
             E+ + R AM+G +G + PE L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 98  --EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 149

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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + PE L +
Sbjct: 65  SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPELLSR 118

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
            G+   E    WF+AG+ I   G   Y  +P
Sbjct: 119 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 147

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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S ++ +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 64  SGEAPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 117

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 151

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>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast|
           precursor (LHCII protein 4.3) (LHCB4.3)
          Length = 276

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 50/182 (27%), Positives = 71/182 (39%), Gaps = 48/182 (26%)
 Frame = +3

Query: 159 FVVRASSSPPAK----QND-NRQLWFASKQSLTYLDGTLPGDFGFDPLGLSDP------- 302
           F  +  + PP K    Q+D +R +WF       +LDG++ GD GFDP GL  P       
Sbjct: 35  FGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYD 94

Query: 303 ---------EGTGGFI---------------EPRWLAYG-------EIFNGRTAMMGVVG 389
                    +   G I               +P    +G       E+ +GR AM+G +G
Sbjct: 95  FDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLG 154

Query: 390 MIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPY-----TLFVFEMALIGFAEH 554
            IA EAL         T I W  AG +       Y   P      TL   E+ ++G+ E 
Sbjct: 155 AIAVEAL---------TGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEF 205

Query: 555 RR 560
           +R
Sbjct: 206 QR 207

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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + PE L +
Sbjct: 47  SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPELLAR 100

Query: 417 VGLVPPETAIPWFQAGA 467
            G+   E +  WF+AG+
Sbjct: 101 NGVKFGEAS--WFKAGS 115

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>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S+ + +YL G  PGD+G+D   +S DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 63  SEGTPSYLTGEFPGDYGWDTAAVSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 116

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 554
           E L K GL   E    WF+AGA I   G   Y  +P          ++  ++ L+G  E 
Sbjct: 117 ELLAKNGLKFGEAV--WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEG 174

Query: 555 RRL 563
            R+
Sbjct: 175 YRV 177

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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + PE L +
Sbjct: 67  SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAR 120

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEHRRL 563
            G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+G  E  R+
Sbjct: 121 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176

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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
 Frame = +3

Query: 171 ASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYG 347
           +SSSP    +  + L   S ++ +YL G  P D+G+D  GLS DPE    F + R L   
Sbjct: 46  SSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPE---TFAKNREL--- 99

Query: 348 EIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E+ + R AM+G +G + PE   + G+   E    WF+AGA I   G   Y  +P
Sbjct: 100 EVIHCRWAMLGALGCVFPELFARNGIKFGEAV--WFKAGAQIFSEGGLDYLGNP 151

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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F   R L   E+ + R AM+G +G + PE L +
Sbjct: 67  SYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPELLAR 120

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
            G+   E    WF+AG+ I   G   Y  +P
Sbjct: 121 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 149

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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S ++ +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 63  SGEAPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 116

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E   + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 117 ELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 150

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>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ +   AM+G +G + PE L +
Sbjct: 8   SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSTWAMLGALGCVFPELLSR 61

Query: 417 VGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEHRRL 563
            G+   E    WF+AG+ I   G   Y  +P          ++  ++ L+G  E  R+
Sbjct: 62  NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 117

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>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +3

Query: 213 LWFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           +WF   Q   +L G  P D GFDPL ++ DP      +  R +   E+F+ R +M+ +VG
Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPT-----VYAR-MRVSEVFHARLSMLAIVG 214

Query: 390 MIAPEALGKVGLVPPETAIPWFQAG 464
            I PE LGK           WF+ G
Sbjct: 215 SIVPELLGKGA---------WFEVG 230



 Score = 33.5 bits (75), Expect = 0.53
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 348 EIFNGRTAMMGVVGMIAPEALG 413
           E+FNGR AM+ +VG + PE LG
Sbjct: 11  EVFNGRLAMLAIVGCVYPELLG 32

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>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29|
          Length = 279

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 45/160 (28%), Positives = 64/160 (40%), Gaps = 44/160 (27%)
 Frame = +3

Query: 213 LWFASKQSLTYLDGTLPGDFGFDPLGLSDP----------------EGTGGFIEP----- 329
           LW  +     +LDG+LPGD GFDPLGLS P                +   G +E      
Sbjct: 51  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQAT 110

Query: 330 --------RWLAYGEIF-----------NGRTAMMGVVGMIAPEALGKVGLVPPETAIPW 452
                   R   Y E+F           +GR AM+  +G +  EA          T + W
Sbjct: 111 PDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEA---------TTGVSW 161

Query: 453 FQAGAIPPAG-TYQYWADPYT---LFVFEMALIGFAEHRR 560
            +AG +   G +Y   + P++   L   E+ L+G AE  R
Sbjct: 162 VEAGKVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYR 201

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>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +3

Query: 219 FASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMI 395
           F+   +  YL G  PGD+G+D  GLS DP+    + E       E+ + R A++G +G++
Sbjct: 45  FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGIL 98

Query: 396 APEALGKVGLVPPETAIPWFQAGA 467
            PE L +   V     + WF+AGA
Sbjct: 99  TPELLSQYAGVQFGEPV-WFKAGA 121



 Score = 30.4 bits (67), Expect = 4.5
 Identities = 25/55 (45%), Positives = 28/55 (50%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           S+  L  LD   PG   FDPLGL+D   T  F E   L   EI NGR AM   +G
Sbjct: 166 SEGFLDDLDTLYPGG-PFDPLGLADDPDT--FAE---LKVKEIKNGRLAMFSCLG 214

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>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast|
           precursor (LHCII protein 4.1) (LHCB4.1)
          Length = 290

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 44/162 (27%), Positives = 61/162 (37%), Gaps = 43/162 (26%)
 Frame = +3

Query: 204 NRQLWFASKQSLTYLDGTLPGDFGFDPLGLSDPEG-----------------TGGFIEPR 332
           +R LW+    S  +LDG+L GD+GFDP GL  P                    G  I  R
Sbjct: 54  DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113

Query: 333 WLA----------YGEIF-----------NGRTAMMGVVGMIAPEALGKVGLVPPETAIP 449
             A          Y E+F           +GR AM+  +G ++ E L         T + 
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVT 164

Query: 450 WFQAGAIPPAGTYQYWADPY-----TLFVFEMALIGFAEHRR 560
           W  AG +       Y   P      TL   E+ +IG+ E +R
Sbjct: 165 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 206

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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S ++ +YL G  PGD+G+D   LS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 64  SGEAPSYLTGEFPGDYGWDTAELSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 117

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E L + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP 151

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>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
 Frame = +3

Query: 204 NRQLWFA--SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAM 374
           +R  W    S  +  YL G  PGD+G+D  GLS DPE    + E       E+ + R A+
Sbjct: 43  DRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYREL------EVIHARWAL 96

Query: 375 MGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           +G +G++ PE L     V     + WF+AGA I   G   Y   P
Sbjct: 97  LGALGILTPELLSTYAGVKFGEPV-WFKAGAQIFSEGGLDYLGSP 140



 Score = 31.2 bits (69), Expect = 2.6
 Identities = 23/48 (47%), Positives = 25/48 (52%)
 Frame = +3

Query: 246 LDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LD   PG+  FDPLGL+D   T  F E   L   EI NGR AM    G
Sbjct: 176 LDPLYPGE-SFDPLGLADDPDT--FAE---LKVKEIKNGRLAMFSCFG 217

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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPE 404
           S ++ +YL G  PGD+G+D  GLS    T  F + R L   E+ + R  M+G +G + PE
Sbjct: 63  SGEAPSYLTGEFPGDYGWDTAGLSADPAT--FAKNRKL---EVIHCRWTMLGALGCVFPE 117

Query: 405 ALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
              + G+   E    WF+AG+ I   G   Y  +P
Sbjct: 118 LFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNP 150

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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = +3

Query: 225 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           S ++ +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R AM+G +G + P
Sbjct: 64  SGEAPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFP 117

Query: 402 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           E   + G+   E    W +AG+ I   G   Y  +P
Sbjct: 118 ELFARNGVKFGEAV--WLKAGSQIFSEGGLDYLGNP 151

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>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 273

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 216 WFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGM 392
           W    Q      G  PGD+G+D  GLS DPE    + E       E+ + R  ++G +GM
Sbjct: 66  WDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGM 119

Query: 393 IAPEALGKVGLVPPETAIPWFQAG-AIPPAGTYQYWADP 506
           + PE L     +    A  WF+AG AI   G   Y  +P
Sbjct: 120 VTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNP 158



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/48 (47%), Positives = 26/48 (54%)
 Frame = +3

Query: 246 LDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVG 389
           LD   PG+  FDPLGL+D   T  F E   L   EI NGR AM   +G
Sbjct: 194 LDPLYPGE-AFDPLGLADDPDT--FAE---LKVKEIKNGRLAMFACLG 235

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>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
           precursor (LHCII type I CAB-AB10) (LHCP)
          Length = 268

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 419
           +YL G  PGD+G+D  GLS    T  F + R L   E+ + R AM   +G I PE L  +
Sbjct: 71  SYLTGEFPGDYGWDTAGLSAYPET--FAKNREL---EVIHSRCAMSAALGCIFPELLSVM 125

Query: 420 GLVPPETAIPWFQAGA-IPPAGTYQYWADP 506
           G    E    WF+AGA I   G   Y  +P
Sbjct: 126 GQGFGEAV--WFKAGAQIFSEGGLDYLGNP 153

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>FCP_ISOGA (Q39709) Fucoxanthin-chlorophyll a-c binding protein, chloroplast|
           precursor (FCP)
          Length = 208

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +3

Query: 249 DGTLPGDFGFDPLGL--SDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEAL 410
           +G  PGD GFDPLGL  SDP+      E R +   E+ +GR AM+   G +A EA+
Sbjct: 145 EGYEPGDLGFDPLGLAPSDPD------EFRLMQEKELSHGRLAMIAAAGFLAQEAV 194

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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +3

Query: 240 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 416
           +YL G  PGD+G+D  GLS DPE    F + R L   E+ + R A+   +G + PE L +
Sbjct: 66  SYLTGEFPGDYGWDTEGLSADPE---TFAKNREL---EVIHCRWAIAVGLGCVFPELLAR 119

Query: 417 VGLVPPETAIPWFQAGA 467
            G+   E    WF+AG+
Sbjct: 120 NGVKFGEGV--WFKAGS 134

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>CCAC_AMPCA (P55738) Caroteno-chlorophyll a-c binding protein (Fragment)|
          Length = 102

 Score = 37.0 bits (84), Expect = 0.048
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 279 DPLGLSDPEG--TGGFIEP-RWLAYGEIFNGRTAMMGVVGMIAPEALGKV-GLVPPETAI 446
           DP+G  DP G    G +E  + LA  EI +GR AM+  +G I  E  GK+ G + P T +
Sbjct: 10  DPVGFFDPLGFTADGSVENFKKLAQTEIKHGRVAMLATMGYITQEITGKLPGYLSPSTGV 69

Query: 447 PW 452
            +
Sbjct: 70  KY 71

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>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 127

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
 Frame = +3

Query: 255 TLPGDFG-----------FDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIA 398
           T PG FG           FDPLGL+D   T  F E   L   EI NGR AM G++G  A
Sbjct: 33  TAPGQFGEDLDRLYPGGPFDPLGLADDPDT--FPE---LKVKEIKNGRLAMSGMLGFYA 86

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>FCP_ODOSI (Q42395) Fucoxanthin-chlorophyll a-c binding protein, chloroplast|
           precursor (FCP)
          Length = 203

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 249 DGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYG--EIFNGRTAMMGVVGMIAPEALGKVG 422
           +G  PGDF    L      G   F E   L+    E+ NGR AMMG++G++  E LG  G
Sbjct: 142 EGEFPGDFRNGALDF----GWDTFDEETKLSKRAIELNNGRAAMMGILGLMVHEQLG--G 195

Query: 423 LVP 431
            +P
Sbjct: 196 SIP 198

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>MOD5_HUMAN (Q9H3H1) tRNA isopentenyltransferase, mitochondrial precursor (EC|
           2.5.1.8) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPP transferase) (IPTase)
           (IPPT) (hGRO1)
          Length = 467

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 275 AKVTRQRAVEVGEGLLGREPQLPVVILLG-RGAGR 174
           A V   RAV VG GL G +  LP+V++LG  G G+
Sbjct: 2   ASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGK 36

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>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor|
           (Cytochrome c-1)
          Length = 325

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 582 PGCTSPGAAGALRSRSVPSRTRRA----CRGRPSTGR 484
           PG ++PG  G  RSR +P RT +A     +  PS GR
Sbjct: 21  PGASAPGLLGGARSRQLPLRTPQAVSLSSKSGPSRGR 57

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>GUC2D_HUMAN (Q02846) Retinal guanylyl cyclase 1 precursor (EC 4.6.1.2)|
           (Guanylate cyclase 2D, retinal) (RETGC-1) (Rod outer
           segment membrane guanylate cyclase) (ROS-GC)
          Length = 1103

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 271 LASTPWGCPTRRAPAGSSSPGGWPTARSSTAGRR*WGW 384
           +A  PWGCP  +A  G+++P   P A +  A  R +GW
Sbjct: 145 IALVPWGCPWTQA-EGTTAPAVTPAADALYALLRAFGW 181

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>FCPE_MACPY (Q40301) Fucoxanthin-chlorophyll a-c binding protein E, chloroplast|
           precursor
          Length = 212

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = +3

Query: 222 ASKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 401
           A K S     G  P    +DPLGL        F     L Y EI +GR AM+ VVG I  
Sbjct: 31  AMKMSFESEIGAQPPIGFWDPLGLVADADQERFDR---LRYVEIKHGRIAMLAVVGHITQ 87

Query: 402 EALGKVGLVPPETAIPWFQA-------GAIPPAGTYQ 491
           +     G++  +  + +  +         IPP GT Q
Sbjct: 88  QNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQ 124

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>CILP2_HUMAN (Q8IUL8) Cartilage intermediate layer protein 2 precursor (CILP-2)|
           [Contains: Cartilage intermediate layer protein 2 C1;
           Cartilage intermediate layer protein 2 C2]
          Length = 1156

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -2

Query: 591 PWNPGCTSPGAAGALRSRSVPSRTRRACRGRP 496
           PW P   S G    LR R  PS    AC GRP
Sbjct: 154 PWGPCSGSCGPGRRLRRRHCPSPAGDACPGRP 185

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>FCPF_MACPY (Q40300) Fucoxanthin-chlorophyll a-c binding protein F, chloroplast|
           precursor (Fragment)
          Length = 211

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 246 LDGTLPGDF--GFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEAL 410
           ++G+ PGDF  G +P   S D   +      R +   E+ NGR A MG++GM+  E L
Sbjct: 139 VEGSFPGDFIIGGNPFASSWDSMSSETQASKRAI---ELNNGRAAQMGILGMMVHEEL 193

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>FIBA_BOVIN (P02672) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide|
           A]
          Length = 615

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 612 DPGSTASPWNPGCTSPGAAGALR-SRSVPSRTRRACRGRPSTG 487
           +PGS A  WNPG   PG+AG     R  P        GRP  G
Sbjct: 332 EPGS-AGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG 373



 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 612 DPGSTASPWNPGCTSPGAAGALR-SRSVPSRTRRACRGRPSTG 487
           +PGS A  WNPG   PG+AG     R  P        GRP  G
Sbjct: 319 EPGS-AGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG 360



 Score = 29.3 bits (64), Expect = 10.0
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 618 SRDPGSTASPWNPGCTSPGAAGALR-SRSVPSRTRRACRGRPSTG 487
           S  PGS+ + WNPG   PG+AG     R  P        GRP  G
Sbjct: 304 SYGPGSSGT-WNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG 347

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>NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor|
           (Na(+)/Ca(2+)-exchange protein 3)
          Length = 927

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = -3

Query: 350 LAVGQPPGLDEPAGALRVGQPQGVEAKVTRQ-----RAVEVGEGLLGREPQLPVVI 198
           +A+G+P  ++    AL +  P+  + K+T +     R  E+G+ +LG  P+L V+I
Sbjct: 616 IALGEPKWMERGISALLLS-PEVTDRKLTMEEEEAKRIAEMGKPVLGEHPKLEVII 670

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>GUC2D_CANFA (O19179) Retinal guanylyl cyclase 1 precursor (EC 4.6.1.2)|
           (Guanylate cyclase 2D, retinal) (RETGC-1) (Rod outer
           segment membrane guanylate cyclase) (ROS-GC) (Guanylate
           cyclase E) (GC-E)
          Length = 1109

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 271 LASTPWGCPTRRAPAGSSSPGGWPTARSSTAGRR*WGW 384
           +A  PW CP  RA  G+++P G P A +  A  R + W
Sbjct: 149 VALVPWSCPGTRA-GGTTAPAGTPAADALYALLRAFRW 185

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>AROC_METKA (Q8TXN1) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 386

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 359 VEDLAVGQPPGLDEPAGALRVGQPQGVEAKVTRQRAVEVGEGL 231
           +E +A   PPGL +P      G+  G    +   +AVEVG G+
Sbjct: 216 IEVIAENVPPGLGDPVFGRLDGELAGALMNIPAVKAVEVGSGV 258

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>NKX61_MESAU (Q60554) Homeobox protein Nkx-6.1|
          Length = 364

 Score = 25.0 bits (53), Expect(2) = 9.8
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 621 TSRDPGSTASPWNPGCTSPGAAGALRSRSVP 529
           +S  P       NPG   P AAG L S S P
Sbjct: 55  SSSSPSPPLGAHNPGGLKPPAAGGLSSLSSP 85



 Score = 22.7 bits (47), Expect(2) = 9.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 427 TRPTLPRASGAIMPT 383
           +RP++P ASGA +P+
Sbjct: 102 SRPSMPVASGAALPS 116

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>FCPD_PHATR (Q08587) Fucoxanthin-chlorophyll a-c binding protein D, chloroplast|
           precursor
          Length = 197

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +3

Query: 276 FDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEA 407
           FDPLGL        F     L Y EI +GR +M+ VVG +  EA
Sbjct: 46  FDPLGLVADGDQEKFDR---LRYVEIKHGRISMLAVVGYLVQEA 86

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>FCPC_PHATR (Q08586) Fucoxanthin-chlorophyll a-c binding protein C, chloroplast|
           precursor
          Length = 197

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +3

Query: 276 FDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEA 407
           FDPLGL        F     L Y EI +GR +M+ VVG +  EA
Sbjct: 46  FDPLGLVADGDQEKFDR---LRYVEIKHGRISMLAVVGYLVQEA 86

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>GUC2D_BOVIN (P55203) Retinal guanylyl cyclase 1 precursor (EC 4.6.1.2)|
           (Guanylate cyclase 2D, retinal) (RETGC-1) (Rod outer
           segment membrane guanylate cyclase) (ROS-GC) (Guanylate
           cyclase E) (GC-E)
          Length = 1110

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 271 LASTPWGCPTRRAPAGSSSPGGWPTARSSTAGRR*WGW 384
           +A  PWGCP  RA AG+++P   P A +  A  R + W
Sbjct: 150 VALVPWGCPGTRA-AGTTAPVVTPAADALYALLRAFRW 186

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>SYE1_WOLPM (Q73HV5) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA|
           ligase 1) (GluRS 1)
          Length = 473

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 178 DDALTTKGDFREEDDLEKEDCRGLPSSCLPERRPW 74
           D+    K   REE  + K  C   P SC P  R W
Sbjct: 104 DEVAEKKAKAREEGKIYKHKCTTKPPSCHPSSRHW 138

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>NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor|
           (Na(+)/Ca(2+)-exchange protein 3)
          Length = 927

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = -3

Query: 350 LAVGQPPGLDEPAGALRVGQPQGVEAKVTRQ-----RAVEVGEGLLGREPQLPVVI 198
           +A+G+P  ++    AL +  P   + K+T +     R  E+G+ +LG  P+L V+I
Sbjct: 616 IALGEPKWMERGISALLLS-PDVTDRKLTMEEEEAKRIAEMGKPVLGEHPKLEVII 670

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>TM14C_HUMAN (Q9P0S9) Transmembrane protein 14C|
          Length = 112

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +3

Query: 303 EGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAG 482
           + TG  +   W  +G  +    A  G++G +      K G VP   A   F  G++   G
Sbjct: 2   QDTGSVVPLHWFGFG--YAALVASGGIIGYV------KAGSVPSLAAGLLF--GSLAGLG 51

Query: 483 TYQYWADPYTLFVF 524
            YQ   DP  ++VF
Sbjct: 52  AYQLSQDPRNVWVF 65

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>KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (ELK2) (Brain-specific eag-like channel 1) (BEC1)
          Length = 1083

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
 Frame = -2

Query: 621 TSRDPGSTASP----------WNPGCTSPGAAGALRS-RSVPSRTRRACRGRPSTGRCLP 475
           T  + G T SP           +PGCTS  +A  L S R    R R   RGRP     L 
Sbjct: 733 TDGEQGPTVSPAPADEPSSPLLSPGCTSSSSAAKLLSPRRTAPRPRLGGRGRPGRAGALK 792

Query: 474 A 472
           A
Sbjct: 793 A 793

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>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,|
           chloroplast precursor (ELIP)
          Length = 231

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 333 WLAYGEIFNGRTAMMGVVGMIAPE 404
           W A  E++NGR AM+G+V + A E
Sbjct: 198 WSADAELWNGRFAMLGLVALAATE 221

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>VL2_HPV19 (P36752) Minor capsid protein L2|
          Length = 520

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 28/94 (29%), Positives = 41/94 (43%)
 Frame = +3

Query: 168 RASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYG 347
           +A + PP   N   Q   A K     L     G F F  LG+S  +GTGG      L  G
Sbjct: 21  QAGTCPPDVINKVEQTTIADK----ILQYGSAGVF-FGGLGISTGKGTGGATGYVPLGEG 75

Query: 348 EIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIP 449
            +  G TA + +   + P+ +G   ++P +T  P
Sbjct: 76  PVRVGGTATV-IRPSLVPDTIGPSDIIPVDTLNP 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,610,589
Number of Sequences: 219361
Number of extensions: 1596587
Number of successful extensions: 6433
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 5789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6401
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result