ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41g22 |
|---|---|
| Clone Library Name | barley_pub |
>POLN_FCVUR (Q66914) Non-structural polyprotein [Contains: p5.6; p32; Helicase| (2C-like protein) (p39); 3A-like protein (p30); Viral genome-linked protein (VPg) (p13); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymera Length = 1763 Score = 32.7 bits (73), Expect = 0.77 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +1 Query: 52 VPKLDNVSPV-TVPLDTSDADTEKSHSDSTSQAAASSNESLN---HPANIHIVLKYVASL 219 +P ++V+ T L S+ +++ H D AA ++L+ HPAN+ + + + SL Sbjct: 75 IPSWEDVTKTSTYSLLLSEDTSDELHPDDLVNVAAHIRKALSTQSHPANVDMCKEQLTSL 134 Query: 220 LEMPEAELAETS 255 L M EA L + S Sbjct: 135 LVMAEAMLPQRS 146
>VCAP_HHV6U (P17887) Major capsid protein (MCP)| Length = 1345 Score = 32.7 bits (73), Expect = 0.77 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%) Frame = -3 Query: 538 DTATYVETRVIIXQHSSYEPLS-HFFLTATYL----------VLDRLYNYNNIHTVYRQH 392 D ET +++ +HS P++ F L+A L V+D++ N N +HTV R Sbjct: 105 DVTASKETTIMVAKHSEKHPINISFDLSAACLEHLENTFKNTVIDQILNINALHTVLRSL 164 Query: 391 QAERTRISMSMVHVRRP----PAPPQITQLQL 308 + + ++H +PPQ L + Sbjct: 165 KNSADSLERGLIHAFMQTLLRKSPPQFIVLTM 196
>Y1582_METJA (Q58977) Putative deoxyribonuclease MJ1582 (EC 3.1.21.-)| Length = 249 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/57 (26%), Positives = 29/57 (50%) Frame = +1 Query: 109 DTEKSHSDSTSQAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLF 279 D E +++ S + + N P N+ +V++ +A + EM E+ + Y+N K F Sbjct: 189 DLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKNTCKFF 245
>YBF5_YEAST (P34220) Putative deoxyribonuclease YBL055c (EC 3.1.21.-)| Length = 418 Score = 32.0 bits (71), Expect = 1.3 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%) Frame = +1 Query: 1 KAIPLDRILLETDAPDAVPKLDNVS--PVTVPLDTSDADTEKSHSDSTSQAAASSN---- 162 K IP +R+LLETDAP K + S + + D + S ++ A N Sbjct: 315 KQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEEL 374 Query: 163 ---ESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLF 279 + N P N+ V V+ + ++ A L +T+++ K+F Sbjct: 375 YMVKGRNEPCNMEQVAIVVSEVKDVDLATLIDTTWKTTCKIF 416
>YCFH_ECOLI (P0AFQ7) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/98 (26%), Positives = 40/98 (40%) Frame = +1 Query: 7 IPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPAN 186 +PLDR+L+ETD+P P VP + N PA Sbjct: 195 VPLDRLLVETDSPYLAP---------VPHRGKE----------------------NQPAM 223 Query: 187 IHIVLKYVASLLEMPEAELAETSYRNATKLFSYPGSKV 300 + V +Y+A L + ELA+ + N +LF S++ Sbjct: 224 VRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261
>YCFH_ECOL6 (P0AFQ8) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/98 (26%), Positives = 40/98 (40%) Frame = +1 Query: 7 IPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPAN 186 +PLDR+L+ETD+P P VP + N PA Sbjct: 195 VPLDRLLVETDSPYLAP---------VPHRGKE----------------------NQPAM 223 Query: 187 IHIVLKYVASLLEMPEAELAETSYRNATKLFSYPGSKV 300 + V +Y+A L + ELA+ + N +LF S++ Sbjct: 224 VRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261
>YCFH_ECO57 (P0AFQ9) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/98 (26%), Positives = 40/98 (40%) Frame = +1 Query: 7 IPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPAN 186 +PLDR+L+ETD+P P VP + N PA Sbjct: 195 VPLDRLLVETDSPYLAP---------VPHRGKE----------------------NQPAM 223 Query: 187 IHIVLKYVASLLEMPEAELAETSYRNATKLFSYPGSKV 300 + V +Y+A L + ELA+ + N +LF S++ Sbjct: 224 VRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261
>Y325_BUCBP (Q89AG7) Putative deoxyribonuclease bbp_325 (EC 3.1.21.-)| Length = 265 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/96 (27%), Positives = 38/96 (39%) Frame = +1 Query: 1 KAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHP 180 K +P+DRIL+ETD+P P VP + N P Sbjct: 194 KFVPIDRILIETDSPYLSP---------VPYRGIE----------------------NQP 222 Query: 181 ANIHIVLKYVASLLEMPEAELAETSYRNATKLFSYP 288 A ++ + Y+A L M A + +N KLF+ P Sbjct: 223 AYLYDTMLYIAQLKNMSPECFAIQTTKNFLKLFNLP 258
>YA9A_SCHPO (Q09788) Hypothetical serine-rich protein C13G6.10c precursor| Length = 530 Score = 31.2 bits (69), Expect = 2.2 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Frame = +1 Query: 61 LDNV-----SPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPA-NIHIVLKYVASLL 222 +DNV S +VP+ T + S TS A SS S ++PA + + Y AS Sbjct: 118 MDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASST 177 Query: 223 EMPEAELAETSYRNATKLFSYPGS 294 E+ + A + +T + P S Sbjct: 178 EVTSSYPASSEVATSTSSYVAPVS 201
>PDC2_ORYSA (P51848) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| Length = 603 Score = 30.8 bits (68), Expect = 2.9 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 151 ASSNESLNHPANIHIVLKYVASLLEMPEAELAET--SYRNATKLFSYPGSKVHHEAEAG* 324 AS+ E N P ++++ K+V +L A +AET S+ N KL G + + G Sbjct: 395 ASAGEEPNEPLRVNVLFKHVQKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS 454 Query: 325 FG 330 G Sbjct: 455 IG 456
>BAP1_HUMAN (Q92560) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)| (BRCA1-associated protein 1) (Cerebral protein 6) Length = 729 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +1 Query: 31 ETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNH--PANIHIVLK 204 E+ P+ N SP+ + + + A +E +H+D +AA S ++ +H P +V+K Sbjct: 278 ESQLPEESKSASNKSPLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVK 337 Query: 205 YVASLL 222 S L Sbjct: 338 PPGSSL 343
>YABD_BACSU (P37545) Putative deoxyribonuclease yabD (EC 3.1.21.-)| Length = 255 Score = 30.4 bits (67), Expect = 3.8 Identities = 24/93 (25%), Positives = 33/93 (35%) Frame = +1 Query: 1 KAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHP 180 K IP DR+L+ETD P P N P Sbjct: 191 KEIPNDRLLIETDCPFLTPH-------------------------------PFRGKRNEP 219 Query: 181 ANIHIVLKYVASLLEMPEAELAETSYRNATKLF 279 + + V + +A L EM E+A + NA +LF Sbjct: 220 SYVKYVAEQIAELKEMTFEEIASITTENAKRLF 252
>VCAP_HHV7J (P52347) Major capsid protein (MCP)| Length = 1345 Score = 30.0 bits (66), Expect = 5.0 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%) Frame = -3 Query: 538 DTATYVETRVIIXQHSSYEP-----------LSHFFLTATYLVLDRLYNYNNIHTVYRQH 392 D ET V++ ++S P L+H T +LD++ N N IHTV R Sbjct: 105 DVTAPKETTVLVTKYSEKHPINISFELSAACLAHLENTFKNTILDQMLNINAIHTVLRSL 164 Query: 391 QAERTRISMSMVH----VRRPPAPPQ 326 + + +++ APPQ Sbjct: 165 KNSADSLQRGLIYAFIKTILKKAPPQ 190
>GLNA_SULAC (Q9HH09) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 473 Score = 30.0 bits (66), Expect = 5.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 279 LLPWIQGSPRS*SWVIWGGAGGR 347 L+PW+QG R + V WGG GR Sbjct: 83 LIPWMQGVARVLTKVFWGGGKGR 105
>EP84_HCMVA (P17151) Early phosphoprotein p84| Length = 684 Score = 29.6 bits (65), Expect = 6.5 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Frame = +1 Query: 79 VTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPANIHIVLKYVA---SLLEMP---EAE 240 +++PLDTS+A ++S S+S ++SSN +H + + V A L +P A Sbjct: 298 MSLPLDTSEAVAFLNYSSSSSAVSSSSNNHHHHHHHHNAVTDVAAGTDGALLLPIERGAV 357 Query: 241 LAETSYRNATKLFSYPGSKVHHEA 312 ++ S + + L S P H A Sbjct: 358 VSSPSSTSPSSLLSLPRPSSAHSA 381
>PHK_NITEU (Q82T07) Probable phosphoketolase (EC 4.1.2.-)| Length = 790 Score = 29.6 bits (65), Expect = 6.5 Identities = 14/55 (25%), Positives = 26/55 (47%) Frame = +2 Query: 5 QYPWTEFC*RQMHQMQYQSWTMFLQSQSLWTLQMRILKSLTAIRPLRRLPLQTNP 169 Q P +E + H Q ++W + + L+ Q R+++ L + PL + NP Sbjct: 309 QVPLSELAKKPEHIQQLEAWLRSYRPEELFDTQGRLVEPLQTLAPLGNRRMGANP 363
>NQRB_CHLTR (O84280) Probable Na(+)-translocating NADH-quinone reductase| subunit B (EC 1.6.5.-) (Na(+)-translocating NQR subunit B) (Na(+)-NQR subunit B) (NQR complex subunit B) (NQR-1 subunit B) Length = 503 Score = 29.3 bits (64), Expect = 8.5 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +1 Query: 67 NVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPA--NIHI--VLKYVASLLEMPE 234 N S + L T + EKSH D SQ+ + P+ +HI + + +L +P Sbjct: 221 NPSRIKESLATMSSLAEKSHFDGFSQSTCLQVLNSTPPSVKRVHIDAIASNILNLEHVPT 280 Query: 235 AELAETSYRNATKLFSYPGSKV 300 ++ +T + AT SYPG V Sbjct: 281 QDVLQTQF--ATWAESYPGLTV 300
>FUT13_ARATH (Q9C8W3) Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M)| (Galactoside 3(4)-L-fucosyltransferase) (FucTC) (AtFUT13) Length = 401 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 325 FGVGRVAVEHEPCSSKSWCVLPDVVCILYVCYC 423 FG G++ ++H K W +PD + LY C C Sbjct: 94 FGCGKLKMKHVKVLVKGWTWIPDNLENLYSCRC 126
>SHC1_HUMAN (P29353) SHC transforming protein 1 (SH2 domain protein C1) (Src| homology 2 domain-containing transforming protein C1) Length = 583 Score = 29.3 bits (64), Expect = 8.5 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%) Frame = -3 Query: 346 RPPAPPQITQL--QLRGEPWIQG 284 R P PPQ + QLRGEPW G Sbjct: 469 RVPPPPQSVSMAEQLRGEPWFHG 491 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,662,754 Number of Sequences: 219361 Number of extensions: 1498289 Number of successful extensions: 4566 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4559 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
