ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal41g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence Length = 134001 Score = 287 bits (145), Expect = 1e-74 Identities = 306/357 (85%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 8 tgatgaacttgctgcaatccaagcattgagagtcagaagctctgagaaaaataagatgac 67 |||||||||||||||||| |||||| ||||| | | |||||||||||||||||||||||| Sbjct: 109430 tgatgaacttgctgcaattcaagcaatgagactgaaaagctctgagaaaaataagatgac 109489 Query: 68 cagagaccataatggtttccgcaaacttcttatcgtactgaccaaggctggcaaagtgat 127 |||||||||||||| || | ||||||||||| ||| |||| |||||||| |||||||| Sbjct: 109490 aagagaccataatggatttaggaaacttcttattgtattgacaaaggctggaaaagtgat 109549 Query: 128 agctctgcatactggagatggccgtattatctggtcaaatttgttgccttcccttcgtgc 187 ||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| | Sbjct: 109550 agccctgcacactggagatggacgtattatctggtcaaacttgttgcagtcccttcgttc 109609 Query: 188 ttctaaatctggcgaaatgccttctgccttgaggatataccaatggcaggtaccccatca 247 || || ||||| ||||||||||||||||| || |||| ||||||||||| |||||||| Sbjct: 109610 ctccaagtctggtgaaatgccttctgccttaagaatatgtcaatggcaggttccccatca 109669 Query: 248 ccgcgtgatgcgtgagaacccgtccatacttgttgtgggaagatctggagccagct-ctg 306 || ||||||| ||||||||| ||||||||| | | || ||||||||||| || | || Sbjct: 109670 tcgtgtgatgcatgagaacccatccatacttatcattggtagatctggagc-agatagtg 109728 Query: 307 ttgctcctggcgtcctctgtattcttgattcgtattctggagaggaactcaactctc 363 ||||||||| ||||| | | |||||||||| ||||||||||| ||||| ||||||| Sbjct: 109729 ctgctcctggtgtcctatctgttcttgattcatattctggagaagaacttaactctc 109785
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complete sequence Length = 162959 Score = 287 bits (145), Expect = 1e-74 Identities = 306/357 (85%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 8 tgatgaacttgctgcaatccaagcattgagagtcagaagctctgagaaaaataagatgac 67 |||||||||||||||||| |||||| ||||| | | |||||||||||||||||||||||| Sbjct: 16619 tgatgaacttgctgcaattcaagcaatgagactgaaaagctctgagaaaaataagatgac 16678 Query: 68 cagagaccataatggtttccgcaaacttcttatcgtactgaccaaggctggcaaagtgat 127 |||||||||||||| || | ||||||||||| ||| |||| |||||||| |||||||| Sbjct: 16679 aagagaccataatggatttaggaaacttcttattgtattgacaaaggctggaaaagtgat 16738 Query: 128 agctctgcatactggagatggccgtattatctggtcaaatttgttgccttcccttcgtgc 187 ||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| | Sbjct: 16739 agccctgcacactggagatggacgtattatctggtcaaacttgttgcagtcccttcgttc 16798 Query: 188 ttctaaatctggcgaaatgccttctgccttgaggatataccaatggcaggtaccccatca 247 || || ||||| ||||||||||||||||| || |||| ||||||||||| |||||||| Sbjct: 16799 ctccaagtctggtgaaatgccttctgccttaagaatatgtcaatggcaggttccccatca 16858 Query: 248 ccgcgtgatgcgtgagaacccgtccatacttgttgtgggaagatctggagccagct-ctg 306 || ||||||| ||||||||| ||||||||| | | || |||||||||| ||| | || Sbjct: 16859 tcgtgtgatgcatgagaacccatccatacttatcattggtagatctggag-cagatagtg 16917 Query: 307 ttgctcctggcgtcctctgtattcttgattcgtattctggagaggaactcaactctc 363 ||||||||| ||||| | | |||||||||| ||||||||||| ||||| ||||||| Sbjct: 16918 ctgctcctggtgtcctatctgttcttgattcatattctggagaagaacttaactctc 16974
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 287 bits (145), Expect = 1e-74 Identities = 306/357 (85%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 8 tgatgaacttgctgcaatccaagcattgagagtcagaagctctgagaaaaataagatgac 67 |||||||||||||||||| |||||| ||||| | | |||||||||||||||||||||||| Sbjct: 7831844 tgatgaacttgctgcaattcaagcaatgagactgaaaagctctgagaaaaataagatgac 7831903 Query: 68 cagagaccataatggtttccgcaaacttcttatcgtactgaccaaggctggcaaagtgat 127 |||||||||||||| || | ||||||||||| ||| |||| |||||||| |||||||| Sbjct: 7831904 aagagaccataatggatttaggaaacttcttattgtattgacaaaggctggaaaagtgat 7831963 Query: 128 agctctgcatactggagatggccgtattatctggtcaaatttgttgccttcccttcgtgc 187 ||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| | Sbjct: 7831964 agccctgcacactggagatggacgtattatctggtcaaacttgttgcagtcccttcgttc 7832023 Query: 188 ttctaaatctggcgaaatgccttctgccttgaggatataccaatggcaggtaccccatca 247 || || ||||| ||||||||||||||||| || |||| ||||||||||| |||||||| Sbjct: 7832024 ctccaagtctggtgaaatgccttctgccttaagaatatgtcaatggcaggttccccatca 7832083 Query: 248 ccgcgtgatgcgtgagaacccgtccatacttgttgtgggaagatctggagccagct-ctg 306 || ||||||| ||||||||| ||||||||| | | || |||||||||| ||| | || Sbjct: 7832084 tcgtgtgatgcatgagaacccatccatacttatcattggtagatctggag-cagatagtg 7832142 Query: 307 ttgctcctggcgtcctctgtattcttgattcgtattctggagaggaactcaactctc 363 ||||||||| ||||| | | |||||||||| ||||||||||| ||||| ||||||| Sbjct: 7832143 ctgctcctggtgtcctatctgttcttgattcatattctggagaagaacttaactctc 7832199
>dbj|AK070398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048G06, full insert sequence Length = 3440 Score = 287 bits (145), Expect = 1e-74 Identities = 306/357 (85%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 8 tgatgaacttgctgcaatccaagcattgagagtcagaagctctgagaaaaataagatgac 67 |||||||||||||||||| |||||| ||||| | | |||||||||||||||||||||||| Sbjct: 1496 tgatgaacttgctgcaattcaagcaatgagactgaaaagctctgagaaaaataagatgac 1555 Query: 68 cagagaccataatggtttccgcaaacttcttatcgtactgaccaaggctggcaaagtgat 127 |||||||||||||| || | ||||||||||| ||| |||| |||||||| |||||||| Sbjct: 1556 aagagaccataatggatttaggaaacttcttattgtattgacaaaggctggaaaagtgat 1615 Query: 128 agctctgcatactggagatggccgtattatctggtcaaatttgttgccttcccttcgtgc 187 ||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| | Sbjct: 1616 agccctgcacactggagatggacgtattatctggtcaaacttgttgcagtcccttcgttc 1675 Query: 188 ttctaaatctggcgaaatgccttctgccttgaggatataccaatggcaggtaccccatca 247 || || ||||| ||||||||||||||||| || |||| ||||||||||| |||||||| Sbjct: 1676 ctccaagtctggtgaaatgccttctgccttaagaatatgtcaatggcaggttccccatca 1735 Query: 248 ccgcgtgatgcgtgagaacccgtccatacttgttgtgggaagatctggagccagct-ctg 306 || ||||||| ||||||||| ||||||||| | | || |||||||||| ||| | || Sbjct: 1736 tcgtgtgatgcatgagaacccatccatacttatcattggtagatctggag-cagatagtg 1794 Query: 307 ttgctcctggcgtcctctgtattcttgattcgtattctggagaggaactcaactctc 363 ||||||||| ||||| | | |||||||||| ||||||||||| ||||| ||||||| Sbjct: 1795 ctgctcctggtgtcctatctgttcttgattcatattctggagaagaacttaactctc 1851
>dbj|AK065765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040F09, full insert sequence Length = 2572 Score = 287 bits (145), Expect = 1e-74 Identities = 306/357 (85%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 8 tgatgaacttgctgcaatccaagcattgagagtcagaagctctgagaaaaataagatgac 67 |||||||||||||||||| |||||| ||||| | | |||||||||||||||||||||||| Sbjct: 633 tgatgaacttgctgcaattcaagcaatgagactgaaaagctctgagaaaaataagatgac 692 Query: 68 cagagaccataatggtttccgcaaacttcttatcgtactgaccaaggctggcaaagtgat 127 |||||||||||||| || | ||||||||||| ||| |||| |||||||| |||||||| Sbjct: 693 aagagaccataatggatttaggaaacttcttattgtattgacaaaggctggaaaagtgat 752 Query: 128 agctctgcatactggagatggccgtattatctggtcaaatttgttgccttcccttcgtgc 187 ||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| | Sbjct: 753 agccctgcacactggagatggacgtattatctggtcaaacttgttgcagtcccttcgttc 812 Query: 188 ttctaaatctggcgaaatgccttctgccttgaggatataccaatggcaggtaccccatca 247 || || ||||| ||||||||||||||||| || |||| ||||||||||| |||||||| Sbjct: 813 ctccaagtctggtgaaatgccttctgccttaagaatatgtcaatggcaggttccccatca 872 Query: 248 ccgcgtgatgcgtgagaacccgtccatacttgttgtgggaagatctggagccagct-ctg 306 || ||||||| ||||||||| ||||||||| | | || |||||||||| ||| | || Sbjct: 873 tcgtgtgatgcatgagaacccatccatacttatcattggtagatctggag-cagatagtg 931 Query: 307 ttgctcctggcgtcctctgtattcttgattcgtattctggagaggaactcaactctc 363 ||||||||| ||||| | | |||||||||| ||||||||||| ||||| ||||||| Sbjct: 932 ctgctcctggtgtcctatctgttcttgattcatattctggagaagaacttaactctc 988
>gb|AY107078.1| Zea mays PCO126628 mRNA sequence Length = 1793 Score = 252 bits (127), Expect = 7e-64 Identities = 298/355 (83%) Strand = Plus / Plus Query: 8 tgatgaacttgctgcaatccaagcattgagagtcagaagctctgagaaaaataagatgac 67 ||||||| ||||||||||||||||||||||| | | ||||||||||||||||||||||| Sbjct: 334 tgatgaagttgctgcaatccaagcattgagactaaagagctctgagaaaaataagatgac 393 Query: 68 cagagaccataatggtttccgcaaacttcttatcgtactgaccaaggctggcaaagtgat 127 |||||||||||||| || |||||||| ||| | ||| |||| ||||||||||||||||| Sbjct: 394 aagagaccataatggatttcgcaaactccttgttgtattgacaaaggctggcaaagtgat 453 Query: 128 agctctgcatactggagatggccgtattatctggtcaaatttgttgccttcccttcgtgc 187 ||||||| ||||||||||| || ||||||||||||| ||| |||| || |||||||| Sbjct: 454 gactctgcacactggagatggacgcgttatctggtcaaaattgctgccatctcttcgtgc 513 Query: 188 ttctaaatctggcgaaatgccttctgccttgaggatataccaatggcaggtaccccatca 247 || | || ||| | | |||||||||| || |||||||||||||||||||| || ||||| Sbjct: 514 ctccagatttggtggagtgccttctgcattaaggatataccaatggcaggtcccgcatca 573 Query: 248 ccgcgtgatgcgtgagaacccgtccatacttgttgtgggaagatctggagccagctctgt 307 | | |||||||| || ||||| || |||||||||| || ||| ||||||| ||| Sbjct: 574 cagtgtgatgcgggaaaacccatctgtacttgttgttggtagaactggagcagaatcttc 633 Query: 308 tgctcctggcgtcctctgtattcttgattcgtattctggagaggaactcaactct 362 ||||||||||| ||| |||||||||||| ||||||||||| ||||| |||||| Sbjct: 634 agctcctggcgtattctctattcttgattcatattctggagaagaacttaactct 688
>emb|CT025709.6| Mouse DNA sequence from clone RP23-364G1 on chromosome 17, complete sequence Length = 162359 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 285 ggaagatctggagccagctctgttg 309 ||||||||||||| ||||||||||| Sbjct: 157458 ggaagatctggagacagctctgttg 157482
>gb|AC122005.3| Mus musculus chromosome 5 clone RP24-340B11, complete sequence Length = 183264 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 agaccataatggtttccgca 90 |||||||||||||||||||| Sbjct: 21686 agaccataatggtttccgca 21667
>ref|XM_360905.1| Magnaporthe grisea 70-15 hypothetical protein (MG03448.4) partial mRNA Length = 1383 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tgatagctctgcatactgga 143 |||||||||||||||||||| Sbjct: 468 tgatagctctgcatactgga 449
>gb|AC137154.2| Mus musculus BAC clone RP24-572L22 from chromosome 5, complete sequence Length = 173460 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 agaccataatggtttccgca 90 |||||||||||||||||||| Sbjct: 112845 agaccataatggtttccgca 112826
>emb|AL136380.22| Human DNA sequence from clone RP5-882O7 on chromosome 1p33-34.2 Contains the 5' end of the PTCH2 gene for patched homolog 2 (Drosophila), a ribosomal protein S2 (RPS2) pseudogene, the EIF2B3 gene for eukaryotic translation initiation factor 2B subunit 3 gamma 58kDa, a chromosome 14 open reading frame 18 (C14orf18) pseudogene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a mitochondrial ribosomal protein S17 (MRPS17) pseudogene and four CpG islands, complete sequence Length = 171656 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ataagatgaccagagaccat 77 |||||||||||||||||||| Sbjct: 104903 ataagatgaccagagaccat 104884
>gb|AC159207.2| Mus musculus BAC clone RP23-150H14 from chromosome 13, complete sequence Length = 191824 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttgctcctggcgtcctctgt 326 |||||||||||||||||||| Sbjct: 50949 ttgctcctggcgtcctctgt 50930
>dbj|AK016211.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930563N14 product:unclassifiable, full insert sequence Length = 1044 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttgctcctggcgtcctctgt 326 |||||||||||||||||||| Sbjct: 343 ttgctcctggcgtcctctgt 324
>dbj|AK015807.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930516M05 product:unclassifiable, full insert sequence Length = 606 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttgctcctggcgtcctctgt 326 |||||||||||||||||||| Sbjct: 306 ttgctcctggcgtcctctgt 287 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,064,275 Number of Sequences: 3902068 Number of extensions: 3064275 Number of successful extensions: 53728 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53691 Number of HSP's gapped (non-prelim): 36 length of query: 375 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 353 effective length of database: 17,147,199,772 effective search space: 6052961519516 effective search space used: 6052961519516 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
