| Clone Name | baal41f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY112372.1| Zea mays CL6272_1 mRNA sequence Length = 1354 Score = 161 bits (81), Expect = 2e-36 Identities = 172/203 (84%) Strand = Plus / Plus Query: 76 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135 |||||||||| |||| |||||||||||| || ||||| || ||||||||||| |||||| Sbjct: 162 cagactgttgtgctcaaggttggcatgtcctgtgagggctgtgttggagctgtcaagcgg 221 Query: 136 nttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtc 195 | || ||||| |||||||| || ||||||| ||| |||||||||| ||| ||||||||| Sbjct: 222 gtcctgggcaagatggaaggcgttgagtcctacgacgtagacatcatggaacagaaggtc 281 Query: 196 actgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaag 255 || |||||||| |||||||| || || || || ||||| |||||||| ||||| |||||| Sbjct: 282 accgtgaagggcaatgtgacacctgacgccgtcctgcaaactgtttccaagactggcaag 341 Query: 256 aagacctccttctggnaggctga 278 ||||| || |||||| ||||||| Sbjct: 342 aagacttcgttctgggaggctga 364
>ref|XM_480605.1| Oryza sativa (japonica cultivar-group), mRNA Length = 246 Score = 159 bits (80), Expect = 7e-36 Identities = 171/202 (84%) Strand = Plus / Plus Query: 77 agactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcggn 136 ||||||||| ||||||||||| ||||| || || || || |||||||||||||||||| Sbjct: 8 agactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcggg 67 Query: 137 ttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtca 196 | || || || ||| |||| || |||||||| || ||||||||||||||||||||||||| Sbjct: 68 tactgggaaagatgcaaggagtggagtcctttgacgtagacatcaaggagcagaaggtca 127 Query: 197 ctgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaaga 256 |||| ||||| ||||| || || ||||| ||||| ||||| ||||| ||||| ||||||| Sbjct: 128 ctgtcaagggaaatgttacaccagatgccgttcttcagaccgtttcaaagacgggcaaga 187 Query: 257 agacctccttctggnaggctga 278 ||||||| |||||| | ||||| Sbjct: 188 agacctcgttctgggatgctga 209
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 119 bits (60), Expect = 6e-24 Identities = 104/119 (87%) Strand = Plus / Plus Query: 160 gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 219 |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 6154649 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 6154708 Query: 220 gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctggnaggctga 278 ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||| | ||||| Sbjct: 6154709 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 6154767 Score = 56.0 bits (28), Expect = 7e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 76 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135 |||||||||| ||||||||||| ||||| || || || || |||||||||||||||||| Sbjct: 6153673 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 6153732
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 119 bits (60), Expect = 6e-24 Identities = 104/119 (87%) Strand = Plus / Plus Query: 160 gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 219 |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 18042 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 18101 Query: 220 gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctggnaggctga 278 ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||| | ||||| Sbjct: 18102 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 18160 Score = 56.0 bits (28), Expect = 7e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 76 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135 |||||||||| ||||||||||| ||||| || || || || |||||||||||||||||| Sbjct: 17066 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 17125
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0486F07 Length = 154926 Score = 119 bits (60), Expect = 6e-24 Identities = 104/119 (87%) Strand = Plus / Plus Query: 160 gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 219 |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 110666 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 110725 Query: 220 gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctggnaggctga 278 ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||| | ||||| Sbjct: 110726 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 110784 Score = 56.0 bits (28), Expect = 7e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 76 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135 |||||||||| ||||||||||| ||||| || || || || |||||||||||||||||| Sbjct: 109690 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 109749
>emb|AJ844002.1| Plantago major mRNA for copper chaperone (cch1 gene) Length = 703 Score = 99.6 bits (50), Expect = 5e-18 Identities = 79/89 (88%) Strand = Plus / Plus Query: 70 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129 ||||||||||||||||| |||| |||||||||||| ||| | || || |||||||||||| Sbjct: 139 atgtctcagactgttgagctcaaggttggcatgtcgtgccaaggctgtgttggagctgtt 198 Query: 130 aagcggnttcttggcaaaatggaaggtgt 158 |||||| | ||||| |||||||||||||| Sbjct: 199 aagcgggtccttggaaaaatggaaggtgt 227 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 229 ctgcagactgtttcgaagacaggcaagaa 257 |||||||||||||| ||||| |||||||| Sbjct: 298 ctgcagactgtttcaaagactggcaagaa 326
>gb|AY603358.1| Populus alba x Populus tremula var. glandulosa copper chaperone (CCH) mRNA, complete cds Length = 540 Score = 77.8 bits (39), Expect = 2e-11 Identities = 166/209 (79%) Strand = Plus / Plus Query: 70 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129 |||||||||||||||| |||| |||||| |||||||| || || || ||||| ||||| Sbjct: 56 atgtctcagactgttgtcctcaaggttggtatgtcatgtgaaggctgtgttggggctgtg 115 Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189 || || || | ||||||||||||||||| || || | || | || | |||||||| Sbjct: 116 aaaagggttttgggcaaaatggaaggtgtggaatcatatgacattgatttgaaggagcaa 175 Query: 190 aaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagaca 249 || ||||| ||||| || |||||| ||| ||||||||||| ||||| || || ||||| Sbjct: 176 aaagtcacagtgaaaggaaatgtgcagccagatgctgttcttcagaccgtctccaagacc 235 Query: 250 ggcaagaagacctccttctggnaggctga 278 || ||||||||| |||||||| | ||||| Sbjct: 236 gggaagaagaccgccttctgggaagctga 264
>ref|XM_466081.1| Oryza sativa (japonica cultivar-group), mRNA Length = 764 Score = 67.9 bits (34), Expect = 2e-08 Identities = 108/133 (81%) Strand = Plus / Plus Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290 Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 291 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 350 Query: 265 ttctggnaggctg 277 |||||| |||||| Sbjct: 351 ttctgggaggctg 363
>dbj|AK121599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039M13, full insert sequence Length = 764 Score = 67.9 bits (34), Expect = 2e-08 Identities = 108/133 (81%) Strand = Plus / Plus Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290 Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 291 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 350 Query: 265 ttctggnaggctg 277 |||||| |||||| Sbjct: 351 ttctgggaggctg 363
>gb|AF198626.1|AF198626 Oryza sativa copper chaperone homolog CCH mRNA, complete cds Length = 676 Score = 67.9 bits (34), Expect = 2e-08 Identities = 108/133 (81%) Strand = Plus / Plus Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 139 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 198 Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 199 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 258 Query: 265 ttctggnaggctg 277 |||||| |||||| Sbjct: 259 ttctgggaggctg 271
>dbj|AK058520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H06, full insert sequence Length = 1157 Score = 67.9 bits (34), Expect = 2e-08 Identities = 108/133 (81%) Strand = Plus / Plus Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 620 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 679 Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 680 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 739 Query: 265 ttctggnaggctg 277 |||||| |||||| Sbjct: 740 ttctgggaggctg 752
>gb|AY253832.1| Lycopersicon esculentum copper chaperone (LeCCH) mRNA, complete cds Length = 391 Score = 63.9 bits (32), Expect = 3e-07 Identities = 115/143 (80%) Strand = Plus / Plus Query: 70 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129 |||||||||||||| | |||| |||||||||||||||||| || || ||||| ||||| Sbjct: 3 atgtctcagactgtcgttctcaaggttggcatgtcatgcgaaggctgtgttggtgctgtg 62 Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189 || || || | || |||||||||||||| || | ||||| | || | |||||||| Sbjct: 63 aaaagggttttggggaaaatggaaggtgtagaaactttcgacattgatctgaaggagcaa 122 Query: 190 aaggtcactgtgaagggtaatgt 212 ||||| ||||||||||| ||||| Sbjct: 123 aaggtgactgtgaagggcaatgt 145
>ref|NM_105295.1| Arabidopsis thaliana metal ion binding AT1G66240 mRNA, complete cds Length = 494 Score = 61.9 bits (31), Expect = 1e-06 Identities = 99/122 (81%) Strand = Plus / Plus Query: 70 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 96 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 155 Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189 || | ||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 156 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 215 Query: 190 aa 191 || Sbjct: 216 aa 217
>gb|AY077678.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds Length = 321 Score = 61.9 bits (31), Expect = 1e-06 Identities = 99/122 (81%) Strand = Plus / Plus Query: 70 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 91 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 150 Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189 || | ||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 151 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 210 Query: 190 aa 191 || Sbjct: 211 aa 212
>gb|AY039898.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds Length = 495 Score = 61.9 bits (31), Expect = 1e-06 Identities = 99/122 (81%) Strand = Plus / Plus Query: 70 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 96 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 155 Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189 || | ||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 156 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 215 Query: 190 aa 191 || Sbjct: 216 aa 217
>emb|BX816283.1|CNS0AD4L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH39ZE01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 461 Score = 61.9 bits (31), Expect = 1e-06 Identities = 99/122 (81%) Strand = Plus / Plus Query: 70 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 59 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 118 Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189 || | ||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 119 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 178 Query: 190 aa 191 || Sbjct: 179 aa 180
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 5e-06 Identities = 77/93 (82%) Strand = Plus / Minus Query: 185 agcagaaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcga 244 |||||||||| || |||||||| ||||| | ||| || | ||| | ||||| || || | Sbjct: 19492124 agcagaaggtgacggtgaagggcaatgtcaagccagaagacgttttccagacggtctcaa 19492065 Query: 245 agacaggcaagaagacctccttctggnaggctg 277 ||||||| |||||||||||||||||| |||||| Sbjct: 19492064 agacagggaagaagacctccttctgggaggctg 19492032
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 60.0 bits (30), Expect = 5e-06 Identities = 77/93 (82%) Strand = Plus / Minus Query: 185 agcagaaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcga 244 |||||||||| || |||||||| ||||| | ||| || | ||| | ||||| || || | Sbjct: 109651 agcagaaggtgacggtgaagggcaatgtcaagccagaagacgttttccagacggtctcaa 109592 Query: 245 agacaggcaagaagacctccttctggnaggctg 277 ||||||| |||||||||||||||||| |||||| Sbjct: 109591 agacagggaagaagacctccttctgggaggctg 109559
>emb|BX813458.1|CNS0ADQL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZG08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 396 Score = 52.0 bits (26), Expect = 0.001 Identities = 76/93 (81%) Strand = Plus / Plus Query: 99 catgtcatgcgagggatgcgttggagctgttaagcggnttcttggcaaaatggaaggtgt 158 |||| |||| |||||||| ||||||||||| || | ||||||| ||||||||||| || Sbjct: 23 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 82 Query: 159 cgagtccttcgatgtagacatcaaggagcagaa 191 ||||| || || || || || ||||||||||| Sbjct: 83 ggagtcatttgacgttgatataaaggagcagaa 115
>gb|BT009582.1| Triticum aestivum clone wre1n.pk0042.e2:fis, full insert mRNA sequence Length = 601 Score = 50.1 bits (25), Expect = 0.004 Identities = 105/132 (79%) Strand = Plus / Plus Query: 144 caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 203 |||||||||||| |||||| |||||| | ||||| || |||||||||| || ||||| Sbjct: 158 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 217 Query: 204 gggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctc 263 ||| || || | ||| || | |||| | ||||| || || ||||| || ||||||||| | Sbjct: 218 gggcaacgtcaagccagaagatgttttccagacggtctccaagaccgggaagaagaccgc 277 Query: 264 cttctggnaggc 275 ||||||| |||| Sbjct: 278 cttctgggaggc 289
>emb|AJ585386.1| Hordeum vulgare subsp. vulgare mRNA for chopper chaperone (cch gene) Length = 467 Score = 50.1 bits (25), Expect = 0.004 Identities = 105/132 (79%) Strand = Plus / Plus Query: 144 caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 203 |||||||||||| |||||| |||||| | ||||| || |||||||||| || ||||| Sbjct: 126 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 185 Query: 204 gggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctc 263 ||| || || | |||||| | ||| | ||||| || || ||||| || ||||||||| | Sbjct: 186 gggcaacgtcaagccggaagacgttttccagacggtctccaagacggggaagaagaccgc 245 Query: 264 cttctggnaggc 275 ||||||| |||| Sbjct: 246 cttctgggaggc 257
>ref|NM_115482.2| Arabidopsis thaliana CCH AT3G56240 (CCH) mRNA, complete cds Length = 658 Score = 46.1 bits (23), Expect = 0.069 Identities = 59/71 (83%) Strand = Plus / Plus Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 162 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 221 Query: 202 aagggtaatgt 212 || |||||||| Sbjct: 222 aaaggtaatgt 232
>gb|AF361860.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds Length = 628 Score = 46.1 bits (23), Expect = 0.069 Identities = 59/71 (83%) Strand = Plus / Plus Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 158 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 217 Query: 202 aagggtaatgt 212 || |||||||| Sbjct: 218 aaaggtaatgt 228
>gb|AY066056.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds Length = 366 Score = 46.1 bits (23), Expect = 0.069 Identities = 59/71 (83%) Strand = Plus / Plus Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 73 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 132 Query: 202 aagggtaatgt 212 || |||||||| Sbjct: 133 aaaggtaatgt 143
>emb|BX823024.1|CNS0A4Y4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB81ZE03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 602 Score = 46.1 bits (23), Expect = 0.069 Identities = 59/71 (83%) Strand = Plus / Plus Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 140 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 199 Query: 202 aagggtaatgt 212 || |||||||| Sbjct: 200 aaaggtaatgt 210
>gb|AC066691.3|AC066691 Arabidopsis thaliana chromosome 1 BAC T6J19 genomic sequence, complete sequence Length = 43666 Score = 46.1 bits (23), Expect = 0.069 Identities = 49/58 (84%) Strand = Plus / Minus Query: 99 catgtcatgcgagggatgcgttggagctgttaagcggnttcttggcaaaatggaaggt 156 |||| |||| |||||||| ||||||||||| || | ||||||| |||||||||||| Sbjct: 27146 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggt 27089
>gb|AY085657.1| Arabidopsis thaliana clone 16647 mRNA, complete sequence Length = 631 Score = 46.1 bits (23), Expect = 0.069 Identities = 59/71 (83%) Strand = Plus / Plus Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 163 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 222 Query: 202 aagggtaatgt 212 || |||||||| Sbjct: 223 aaaggtaatgt 233
>gb|U88711.1|ATU88711 Arabidopsis thaliana copper homeostasis factor (CCH) mRNA, complete cds Length = 585 Score = 46.1 bits (23), Expect = 0.069 Identities = 59/71 (83%) Strand = Plus / Plus Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 106 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 165 Query: 202 aagggtaatgt 212 || |||||||| Sbjct: 166 aaaggtaatgt 176
>ref|XM_764566.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_93_39365_43285) partial mRNA Length = 3921 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 gtagacatcaaggagcagaaggtca 196 |||||||||||||||| |||||||| Sbjct: 1827 gtagacatcaaggagcggaaggtca 1803 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,037,279 Number of Sequences: 3902068 Number of extensions: 2037279 Number of successful extensions: 35568 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35517 Number of HSP's gapped (non-prelim): 47 length of query: 322 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 300 effective length of database: 17,147,199,772 effective search space: 5144159931600 effective search space used: 5144159931600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)