ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal41f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY112372.1| Zea mays CL6272_1 mRNA sequence 161 2e-36
2ref|XM_480605.1| Oryza sativa (japonica cultivar-group), mRNA 159 7e-36
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
4dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
5dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
6emb|AJ844002.1| Plantago major mRNA for copper chaperone (cch1 g... 100 5e-18
7gb|AY603358.1| Populus alba x Populus tremula var. glandulosa co... 78 2e-11
8ref|XM_466081.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
9dbj|AK121599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
10gb|AF198626.1|AF198626 Oryza sativa copper chaperone homolog CCH... 68 2e-08
11dbj|AK058520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
12gb|AY253832.1| Lycopersicon esculentum copper chaperone (LeCCH) ... 64 3e-07
13ref|NM_105295.1| Arabidopsis thaliana metal ion binding AT1G6624... 62 1e-06
14gb|AY077678.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, comp... 62 1e-06
15gb|AY039898.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, comp... 62 1e-06
16emb|BX816283.1|CNS0AD4L Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
18dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
19emb|BX813458.1|CNS0ADQL Arabidopsis thaliana Full-length cDNA Co... 52 0.001
20gb|BT009582.1| Triticum aestivum clone wre1n.pk0042.e2:fis, full... 50 0.004
21emb|AJ585386.1| Hordeum vulgare subsp. vulgare mRNA for chopper ... 50 0.004
22ref|NM_115482.2| Arabidopsis thaliana CCH AT3G56240 (CCH) mRNA, ... 46 0.069
23gb|AF361860.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, c... 46 0.069
24gb|AY066056.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, c... 46 0.069
25emb|BX823024.1|CNS0A4Y4 Arabidopsis thaliana Full-length cDNA Co... 46 0.069
26gb|AC066691.3|AC066691 Arabidopsis thaliana chromosome 1 BAC T6J... 46 0.069
27gb|AY085657.1| Arabidopsis thaliana clone 16647 mRNA, complete s... 46 0.069
28gb|U88711.1|ATU88711 Arabidopsis thaliana copper homeostasis fac... 46 0.069
29ref|XM_764566.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.1

>gb|AY112372.1| Zea mays CL6272_1 mRNA sequence
          Length = 1354

 Score =  161 bits (81), Expect = 2e-36
 Identities = 172/203 (84%)
 Strand = Plus / Plus

                                                                       
Query: 76  cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135
           ||||||||||  |||| |||||||||||| || ||||| || ||||||||||| ||||||
Sbjct: 162 cagactgttgtgctcaaggttggcatgtcctgtgagggctgtgttggagctgtcaagcgg 221

                                                                       
Query: 136 nttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtc 195
            | || ||||| |||||||| || ||||||| ||| |||||||||| ||| |||||||||
Sbjct: 222 gtcctgggcaagatggaaggcgttgagtcctacgacgtagacatcatggaacagaaggtc 281

                                                                       
Query: 196 actgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaag 255
           || |||||||| |||||||| || || || || ||||| |||||||| ||||| ||||||
Sbjct: 282 accgtgaagggcaatgtgacacctgacgccgtcctgcaaactgtttccaagactggcaag 341

                                  
Query: 256 aagacctccttctggnaggctga 278
           ||||| || |||||| |||||||
Sbjct: 342 aagacttcgttctgggaggctga 364



to top

>ref|XM_480605.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 246

 Score =  159 bits (80), Expect = 7e-36
 Identities = 171/202 (84%)
 Strand = Plus / Plus

                                                                       
Query: 77  agactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcggn 136
           |||||||||  ||||||||||| ||||| || || || || |||||||||||||||||| 
Sbjct: 8   agactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcggg 67

                                                                       
Query: 137 ttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtca 196
           | || || || ||| |||| || |||||||| || |||||||||||||||||||||||||
Sbjct: 68  tactgggaaagatgcaaggagtggagtcctttgacgtagacatcaaggagcagaaggtca 127

                                                                       
Query: 197 ctgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaaga 256
           |||| ||||| ||||| || || ||||| ||||| ||||| ||||| ||||| |||||||
Sbjct: 128 ctgtcaagggaaatgttacaccagatgccgttcttcagaccgtttcaaagacgggcaaga 187

                                 
Query: 257 agacctccttctggnaggctga 278
           ||||||| |||||| | |||||
Sbjct: 188 agacctcgttctgggatgctga 209



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 6e-24
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                           
Query: 160     gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 219
               |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || 
Sbjct: 6154649 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 6154708

                                                                          
Query: 220     gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctggnaggctga 278
               ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 6154709 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 6154767



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                           
Query: 76      cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135
               ||||||||||  ||||||||||| ||||| || || || || ||||||||||||||||||
Sbjct: 6153673 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 6153732



to top

>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score =  119 bits (60), Expect = 6e-24
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                         
Query: 160   gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 219
             |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || 
Sbjct: 18042 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 18101

                                                                        
Query: 220   gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctggnaggctga 278
             ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 18102 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 18160



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 76    cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135
             ||||||||||  ||||||||||| ||||| || || || || ||||||||||||||||||
Sbjct: 17066 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 17125



to top

>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0486F07
          Length = 154926

 Score =  119 bits (60), Expect = 6e-24
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                          
Query: 160    gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 219
              |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || 
Sbjct: 110666 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 110725

                                                                         
Query: 220    gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctggnaggctga 278
              ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 110726 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 110784



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                          
Query: 76     cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 135
              ||||||||||  ||||||||||| ||||| || || || || ||||||||||||||||||
Sbjct: 109690 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 109749



to top

>emb|AJ844002.1| Plantago major mRNA for copper chaperone (cch1 gene)
          Length = 703

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129
           ||||||||||||||||| |||| |||||||||||| ||| | || || ||||||||||||
Sbjct: 139 atgtctcagactgttgagctcaaggttggcatgtcgtgccaaggctgtgttggagctgtt 198

                                        
Query: 130 aagcggnttcttggcaaaatggaaggtgt 158
           |||||| | ||||| ||||||||||||||
Sbjct: 199 aagcgggtccttggaaaaatggaaggtgt 227



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 229 ctgcagactgtttcgaagacaggcaagaa 257
           |||||||||||||| ||||| ||||||||
Sbjct: 298 ctgcagactgtttcaaagactggcaagaa 326



to top

>gb|AY603358.1| Populus alba x Populus tremula var. glandulosa copper chaperone
           (CCH) mRNA, complete cds
          Length = 540

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 166/209 (79%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129
           ||||||||||||||||  |||| |||||| |||||||| || || || ||||| ||||| 
Sbjct: 56  atgtctcagactgttgtcctcaaggttggtatgtcatgtgaaggctgtgttggggctgtg 115

                                                                       
Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189
           ||  || || | ||||||||||||||||| || || |  ||  | ||  | |||||||| 
Sbjct: 116 aaaagggttttgggcaaaatggaaggtgtggaatcatatgacattgatttgaaggagcaa 175

                                                                       
Query: 190 aaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagaca 249
           || ||||| ||||| || ||||||  ||| ||||||||||| ||||| || || ||||| 
Sbjct: 176 aaagtcacagtgaaaggaaatgtgcagccagatgctgttcttcagaccgtctccaagacc 235

                                        
Query: 250 ggcaagaagacctccttctggnaggctga 278
           || ||||||||| |||||||| | |||||
Sbjct: 236 gggaagaagaccgccttctgggaagctga 264



to top

>ref|XM_466081.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 764

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 108/133 (81%)
 Strand = Plus / Plus

                                                                       
Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290

                                                                       
Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264
           || ||||| | ||| || |  ||| | ||||| || || |||||||| ||||||||||||
Sbjct: 291 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 350

                        
Query: 265 ttctggnaggctg 277
           |||||| ||||||
Sbjct: 351 ttctgggaggctg 363



to top

>dbj|AK121599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039M13, full
           insert sequence
          Length = 764

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 108/133 (81%)
 Strand = Plus / Plus

                                                                       
Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290

                                                                       
Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264
           || ||||| | ||| || |  ||| | ||||| || || |||||||| ||||||||||||
Sbjct: 291 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 350

                        
Query: 265 ttctggnaggctg 277
           |||||| ||||||
Sbjct: 351 ttctgggaggctg 363



to top

>gb|AF198626.1|AF198626 Oryza sativa copper chaperone homolog CCH mRNA, complete cds
          Length = 676

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 108/133 (81%)
 Strand = Plus / Plus

                                                                       
Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 139 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 198

                                                                       
Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264
           || ||||| | ||| || |  ||| | ||||| || || |||||||| ||||||||||||
Sbjct: 199 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 258

                        
Query: 265 ttctggnaggctg 277
           |||||| ||||||
Sbjct: 259 ttctgggaggctg 271



to top

>dbj|AK058520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H06, full
           insert sequence
          Length = 1157

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 108/133 (81%)
 Strand = Plus / Plus

                                                                       
Query: 145 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 204
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 620 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 679

                                                                       
Query: 205 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 264
           || ||||| | ||| || |  ||| | ||||| || || |||||||| ||||||||||||
Sbjct: 680 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 739

                        
Query: 265 ttctggnaggctg 277
           |||||| ||||||
Sbjct: 740 ttctgggaggctg 752



to top

>gb|AY253832.1| Lycopersicon esculentum copper chaperone (LeCCH) mRNA, complete cds
          Length = 391

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129
           |||||||||||||| |  |||| |||||||||||||||||| || || ||||| ||||| 
Sbjct: 3   atgtctcagactgtcgttctcaaggttggcatgtcatgcgaaggctgtgttggtgctgtg 62

                                                                       
Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189
           ||  || || | || |||||||||||||| ||  | |||||  | ||  | |||||||| 
Sbjct: 63  aaaagggttttggggaaaatggaaggtgtagaaactttcgacattgatctgaaggagcaa 122

                                  
Query: 190 aaggtcactgtgaagggtaatgt 212
           ||||| ||||||||||| |||||
Sbjct: 123 aaggtgactgtgaagggcaatgt 145



to top

>ref|NM_105295.1| Arabidopsis thaliana metal ion binding AT1G66240 mRNA, complete cds
          Length = 494

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 99/122 (81%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129
           ||||||||||| ||||  ||||| || | |||| |||| |||||||| ||||||||||| 
Sbjct: 96  atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 155

                                                                       
Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189
           ||  |  ||||||| ||||||||||| || ||||| || || || || || |||||||||
Sbjct: 156 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 215

             
Query: 190 aa 191
           ||
Sbjct: 216 aa 217



to top

>gb|AY077678.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds
          Length = 321

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 99/122 (81%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129
           ||||||||||| ||||  ||||| || | |||| |||| |||||||| ||||||||||| 
Sbjct: 91  atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 150

                                                                       
Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189
           ||  |  ||||||| ||||||||||| || ||||| || || || || || |||||||||
Sbjct: 151 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 210

             
Query: 190 aa 191
           ||
Sbjct: 211 aa 212



to top

>gb|AY039898.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds
          Length = 495

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 99/122 (81%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129
           ||||||||||| ||||  ||||| || | |||| |||| |||||||| ||||||||||| 
Sbjct: 96  atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 155

                                                                       
Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189
           ||  |  ||||||| ||||||||||| || ||||| || || || || || |||||||||
Sbjct: 156 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 215

             
Query: 190 aa 191
           ||
Sbjct: 216 aa 217



to top

>emb|BX816283.1|CNS0AD4L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH39ZE01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 461

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 99/122 (81%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 129
           ||||||||||| ||||  ||||| || | |||| |||| |||||||| ||||||||||| 
Sbjct: 59  atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 118

                                                                       
Query: 130 aagcggnttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 189
           ||  |  ||||||| ||||||||||| || ||||| || || || || || |||||||||
Sbjct: 119 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 178

             
Query: 190 aa 191
           ||
Sbjct: 179 aa 180



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                            
Query: 185      agcagaaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcga 244
                |||||||||| || |||||||| ||||| | ||| || |  ||| | ||||| || || |
Sbjct: 19492124 agcagaaggtgacggtgaagggcaatgtcaagccagaagacgttttccagacggtctcaa 19492065

                                                 
Query: 245      agacaggcaagaagacctccttctggnaggctg 277
                ||||||| |||||||||||||||||| ||||||
Sbjct: 19492064 agacagggaagaagacctccttctgggaggctg 19492032



to top

>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476H10
          Length = 151703

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                          
Query: 185    agcagaaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcga 244
              |||||||||| || |||||||| ||||| | ||| || |  ||| | ||||| || || |
Sbjct: 109651 agcagaaggtgacggtgaagggcaatgtcaagccagaagacgttttccagacggtctcaa 109592

                                               
Query: 245    agacaggcaagaagacctccttctggnaggctg 277
              ||||||| |||||||||||||||||| ||||||
Sbjct: 109591 agacagggaagaagacctccttctgggaggctg 109559



to top

>emb|BX813458.1|CNS0ADQL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB18ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 396

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                       
Query: 99  catgtcatgcgagggatgcgttggagctgttaagcggnttcttggcaaaatggaaggtgt 158
           |||| |||| |||||||| ||||||||||| ||  |  ||||||| ||||||||||| ||
Sbjct: 23  catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 82

                                            
Query: 159 cgagtccttcgatgtagacatcaaggagcagaa 191
            ||||| || || || || || |||||||||||
Sbjct: 83  ggagtcatttgacgttgatataaaggagcagaa 115



to top

>gb|BT009582.1| Triticum aestivum clone wre1n.pk0042.e2:fis, full insert mRNA
           sequence
          Length = 601

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 105/132 (79%)
 Strand = Plus / Plus

                                                                       
Query: 144 caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 203
           |||||||||||| ||||||  ||||||  | |||||  || |||||||||| || |||||
Sbjct: 158 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 217

                                                                       
Query: 204 gggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctc 263
           ||| || || | ||| || | |||| | ||||| || || ||||| || ||||||||| |
Sbjct: 218 gggcaacgtcaagccagaagatgttttccagacggtctccaagaccgggaagaagaccgc 277

                       
Query: 264 cttctggnaggc 275
           ||||||| ||||
Sbjct: 278 cttctgggaggc 289



to top

>emb|AJ585386.1| Hordeum vulgare subsp. vulgare mRNA for chopper chaperone (cch
           gene)
          Length = 467

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 105/132 (79%)
 Strand = Plus / Plus

                                                                       
Query: 144 caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 203
           |||||||||||| ||||||  ||||||  | |||||  || |||||||||| || |||||
Sbjct: 126 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 185

                                                                       
Query: 204 gggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctc 263
           ||| || || | |||||| |  ||| | ||||| || || ||||| || ||||||||| |
Sbjct: 186 gggcaacgtcaagccggaagacgttttccagacggtctccaagacggggaagaagaccgc 245

                       
Query: 264 cttctggnaggc 275
           ||||||| ||||
Sbjct: 246 cttctgggaggc 257



to top

>ref|NM_115482.2| Arabidopsis thaliana CCH AT3G56240 (CCH) mRNA, complete cds
          Length = 658

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201
           |||||||||||||| || ||||| || ||  | || ||||||||||| ||||| || |||
Sbjct: 162 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 221

                      
Query: 202 aagggtaatgt 212
           || ||||||||
Sbjct: 222 aaaggtaatgt 232



to top

>gb|AF361860.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds
          Length = 628

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201
           |||||||||||||| || ||||| || ||  | || ||||||||||| ||||| || |||
Sbjct: 158 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 217

                      
Query: 202 aagggtaatgt 212
           || ||||||||
Sbjct: 218 aaaggtaatgt 228



to top

>gb|AY066056.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds
          Length = 366

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201
           |||||||||||||| || ||||| || ||  | || ||||||||||| ||||| || |||
Sbjct: 73  ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 132

                      
Query: 202 aagggtaatgt 212
           || ||||||||
Sbjct: 133 aaaggtaatgt 143



to top

>emb|BX823024.1|CNS0A4Y4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB81ZE03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 602

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201
           |||||||||||||| || ||||| || ||  | || ||||||||||| ||||| || |||
Sbjct: 140 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 199

                      
Query: 202 aagggtaatgt 212
           || ||||||||
Sbjct: 200 aaaggtaatgt 210



to top

>gb|AC066691.3|AC066691 Arabidopsis thaliana chromosome 1 BAC T6J19 genomic sequence, complete
             sequence
          Length = 43666

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 99    catgtcatgcgagggatgcgttggagctgttaagcggnttcttggcaaaatggaaggt 156
             |||| |||| |||||||| ||||||||||| ||  |  ||||||| ||||||||||||
Sbjct: 27146 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggt 27089



to top

>gb|AY085657.1| Arabidopsis thaliana clone 16647 mRNA, complete sequence
          Length = 631

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201
           |||||||||||||| || ||||| || ||  | || ||||||||||| ||||| || |||
Sbjct: 163 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 222

                      
Query: 202 aagggtaatgt 212
           || ||||||||
Sbjct: 223 aaaggtaatgt 233



to top

>gb|U88711.1|ATU88711 Arabidopsis thaliana copper homeostasis factor (CCH) mRNA, complete
           cds
          Length = 585

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 142 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 201
           |||||||||||||| || ||||| || ||  | || ||||||||||| ||||| || |||
Sbjct: 106 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 165

                      
Query: 202 aagggtaatgt 212
           || ||||||||
Sbjct: 166 aaaggtaatgt 176



to top

>ref|XM_764566.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_93_39365_43285)
            partial mRNA
          Length = 3921

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 172  gtagacatcaaggagcagaaggtca 196
            |||||||||||||||| ||||||||
Sbjct: 1827 gtagacatcaaggagcggaaggtca 1803


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,037,279
Number of Sequences: 3902068
Number of extensions: 2037279
Number of successful extensions: 35568
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35517
Number of HSP's gapped (non-prelim): 47
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top