| Clone Name | baal41e23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128H21, full insert sequence Length = 2281 Score = 561 bits (283), Expect = e-156 Identities = 577/675 (85%) Strand = Plus / Plus Query: 1 atagtaggtccaaaggaaggtgatacaccggacaggcagaagtattcacaaggcatcaag 60 ||||| || ||||||||||| |||||||| ||||||||||||||| ||| ||||||||| Sbjct: 673 atagttgggccaaaggaaggcgatacaccagacaggcagaagtataaacagggcatcaag 732 Query: 61 ttttttgaacccgagatcaaaggaccttcacctgaaatggtagagtaccttggtatgcaa 120 ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct: 733 ttttttgaacctgagatcaagggaccttcacctgaaatggtagaataccttggaatgcaa 792 Query: 121 aacttgattaatgctgtaaaggaaagtgttgggctgagcgaagggaaactgctatttgga 180 ||||||||||||||||| ||| | ||||| || |||| |||||||||||||| ||||| Sbjct: 793 aacttgattaatgctgtcaagaacagtgtgggtctgactgaagggaaactgctttttggg 852 Query: 181 ttcaaaggcaatttatgtggaaagtttgtgtggggagcacttgacgatgttgtaatgggc 240 || |||||| |||| |||||| |||| |||||||||||||| |||||||| ||||| Sbjct: 853 ggcacaggcaacttatccggaaagattgtttggggagcacttgatgatgttgtgatggga 912 Query: 241 ggtgttagtgaaagtgcattccaaatccaaccaacaggaagtgaaactggtgaagcaact 300 |||||||||||||| ||||||||||||||||||||||||||||||||| || | |||| Sbjct: 913 ggtgttagtgaaagcacattccaaatccaaccaacaggaagtgaaactgatggaccaacc 972 Query: 301 ggattgttcaaaggcatcgtgtctacttcaaataacggtggcttcactagtataaggaca 360 |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| Sbjct: 973 ggattgttcaaaggtactgtctctacttcaaataacggtggcttcactagtataaggaca 1032 Query: 361 aagaattttaccgtgcccgaggacctgtcggcatacgatggtgttgaactacgagttaag 420 ||||||||||| ||||| ||||| ||||| ||||| || ||| |||||||||| |||||| Sbjct: 1033 aagaattttacagtgcctgaggatctgtcagcatatgacggtattgaactacgtgttaag 1092 Query: 421 ggtgatggccgtcggtacaaacttatcataagaactagctacgaatgggatactattggc 480 ||||| || | ||||| |||||||| | | ||||||| |||||||||||| | ||| Sbjct: 1093 ggtgacgggaggcggtataaacttattgtgcgcactagctttgaatgggatactgtcggc 1152 Query: 481 tataccgctagctttgacaccatgaagggagaatggcaaagcattagaatacctttctct 540 || | || ||||||||||| | ||||| ||||||||||| ||| | ||||||||||| Sbjct: 1153 tacattgcaagctttgacacgactaagggggaatggcaaagtgttaaattacctttctct 1212 Query: 541 tcgctgatacctgtatttcgcgcccgtaccgcaactgatgctccgccctttgatgcaagc 600 || |||| |||||||| || ||||| || |||||||| | ||||||||||||||| Sbjct: 1213 tcactgaatcctgtattccgtgcccgcactatgcctgatgctgcaccctttgatgcaagc 1272 Query: 601 aatatcactgcattacagctcatgttcagcaagtttgaatatgacggaaaactcaatcca 660 ||| | ||| | |||||||||||||| ||||||||||| ||||||||||| || || ||| Sbjct: 1273 aatgttacttccttacagctcatgtttagcaagtttgagtatgacggaaagctgaaccca 1332 Query: 661 acatttgcagaaggt 675 |||||| |||||||| Sbjct: 1333 acatttacagaaggt 1347
>dbj|AK071487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099F01, full insert sequence Length = 2191 Score = 480 bits (242), Expect = e-132 Identities = 512/602 (85%) Strand = Plus / Plus Query: 74 agatcaaaggaccttcacctgaaatggtagagtaccttggtatgcaaaacttgattaatg 133 ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 550 agatcaagggaccttcacctgaaatggtagaataccttggaatgcaaaacttgattaatg 609 Query: 134 ctgtaaaggaaagtgttgggctgagcgaagggaaactgctatttggattcaaaggcaatt 193 |||| ||| | ||||| || |||| |||||||||||||| ||||| || |||||| | Sbjct: 610 ctgtcaagaacagtgtgggtctgactgaagggaaactgctttttgggggcacaggcaact 669 Query: 194 tatgtggaaagtttgtgtggggagcacttgacgatgttgtaatgggcggtgttagtgaaa 253 ||| |||||| |||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 670 tatccggaaagattgtttggggagcacttgatgatgttgtgatgggaggtgttagtgaaa 729 Query: 254 gtgcattccaaatccaaccaacaggaagtgaaactggtgaagcaactggattgttcaaag 313 | ||||||||||||||||||||||||||||||||| || | |||| ||||||||||||| Sbjct: 730 gcacattccaaatccaaccaacaggaagtgaaactgatggaccaaccggattgttcaaag 789 Query: 314 gcatcgtgtctacttcaaataacggtggcttcactagtataaggacaaagaattttaccg 373 | | || |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 790 gtactgtctctacttcaaataacggtggcttcactagtataaggacaaagaattttacag 849 Query: 374 tgcccgaggacctgtcggcatacgatggtgttgaactacgagttaagggtgatggccgtc 433 |||| ||||| ||||| ||||| || ||| |||||||||| ||||||||||| || | | Sbjct: 850 tgcctgaggatctgtcagcatatgacggtattgaactacgtgttaagggtgacgggaggc 909 Query: 434 ggtacaaacttatcataagaactagctacgaatgggatactattggctataccgctagct 493 |||| |||||||| | | ||||||| |||||||||||| | ||||| | || |||| Sbjct: 910 ggtataaacttattgtgcgcactagctttgaatgggatactgtcggctacattgcaagct 969 Query: 494 ttgacaccatgaagggagaatggcaaagcattagaatacctttctcttcgctgatacctg 553 ||||||| | ||||| ||||||||||| ||| | ||||||||||||| |||| |||| Sbjct: 970 ttgacacgactaagggggaatggcaaagtgttaaattacctttctcttcactgaatcctg 1029 Query: 554 tatttcgcgcccgtaccgcaactgatgctccgccctttgatgcaagcaatatcactgcat 613 |||| || ||||| || |||||||| | |||||||||||||||||| | ||| | | Sbjct: 1030 tattccgtgcccgcactatgcctgatgctgcaccctttgatgcaagcaatgttacttcct 1089 Query: 614 tacagctcatgttcagcaagtttgaatatgacggaaaactcaatccaacatttgcagaag 673 ||||||||||||| ||||||||||| ||||||||||| || || ||||||||| |||||| Sbjct: 1090 tacagctcatgtttagcaagtttgagtatgacggaaagctgaacccaacatttacagaag 1149 Query: 674 gt 675 || Sbjct: 1150 gt 1151 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 1 atagtaggtccaaaggaaggtgatacaccggacaggcagaagtattcacaaggcatcaag 60 ||||| || ||||||||||| |||||||| ||||||||||||||| ||| ||||||||| Sbjct: 321 atagttgggccaaaggaaggcgatacaccagacaggcagaagtataaacagggcatcaag 380 Query: 61 ttttttgaacc 71 ||||||||||| Sbjct: 381 ttttttgaacc 391
>dbj|AK059065.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G09, full insert sequence Length = 1565 Score = 389 bits (196), Expect = e-105 Identities = 436/516 (84%) Strand = Plus / Plus Query: 160 gaagggaaactgctatttggattcaaaggcaatttatgtggaaagtttgtgtggggagca 219 |||||||||||||| ||||| || |||||| |||| |||||| |||| ||||||||| Sbjct: 24 gaagggaaactgctttttgggggcacaggcaacttatccggaaagattgtttggggagca 83 Query: 220 cttgacgatgttgtaatgggcggtgttagtgaaagtgcattccaaatccaaccaacagga 279 ||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 84 cttgatgatgttgtgatgggaggtgttagtgaaagcacattccaaatccaaccaacagga 143 Query: 280 agtgaaactggtgaagcaactggattgttcaaaggcatcgtgtctacttcaaataacggt 339 |||||||||| || | |||| |||||||||||||| | || |||||||||||||||||| Sbjct: 144 agtgaaactgatggaccaaccggattgttcaaaggtactgtctctacttcaaataacggt 203 Query: 340 ggcttcactagtataaggacaaagaattttaccgtgcccgaggacctgtcggcatacgat 399 |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| || Sbjct: 204 ggcttcactagtataaggacaaagaattttacagtgcctgaggatctgtcagcatatgac 263 Query: 400 ggtgttgaactacgagttaagggtgatggccgtcggtacaaacttatcataagaactagc 459 ||| |||||||||| ||||||||||| || | ||||| |||||||| | | |||||| Sbjct: 264 ggtattgaactacgtgttaagggtgacgggaggcggtataaacttattgtgcgcactagc 323 Query: 460 tacgaatgggatactattggctataccgctagctttgacaccatgaagggagaatggcaa 519 | |||||||||||| | ||||| | || ||||||||||| | ||||| ||||||||| Sbjct: 324 tttgaatgggatactgtcggctacattgcaagctttgacacgactaagggggaatggcaa 383 Query: 520 agcattagaatacctttctcttcgctgatacctgtatttcgcgcccgtaccgcaactgat 579 || ||| | ||||||||||||| |||| |||||||| || ||||| || ||||| Sbjct: 384 agtgttaaattacctttctcttcactgaatcctgtattccgtgcccgcactatgcctgat 443 Query: 580 gctccgccctttgatgcaagcaatatcactgcattacagctcatgttcagcaagtttgaa 639 ||| | |||||||||||||||||| | ||| | |||||||||||||| ||||||||||| Sbjct: 444 gctgcaccctttgatgcaagcaatgttacttccttacagctcatgtttagcaagtttgag 503 Query: 640 tatgacggaaaactcaatccaacatttgcagaaggt 675 ||||||||||| || || ||||||||| |||||||| Sbjct: 504 tatgacggaaagctgaacccaacatttacagaaggt 539
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 2e-31 Identities = 115/129 (89%) Strand = Plus / Plus Query: 186 aggcaatttatgtggaaagtttgtgtggggagcacttgacgatgttgtaatgggcggtgt 245 |||||| |||| |||||| |||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 7623774 aggcaacttatccggaaagattgtttggggagcacttgatgatgttgtgatgggaggtgt 7623833 Query: 246 tagtgaaagtgcattccaaatccaaccaacaggaagtgaaactggtgaagcaactggatt 305 ||||||||| ||||||||||||||||||||||||||||||||| || | |||| ||||| Sbjct: 7623834 tagtgaaagcacattccaaatccaaccaacaggaagtgaaactgatggaccaaccggatt 7623893 Query: 306 gttcaaagg 314 ||||||||| Sbjct: 7623894 gttcaaagg 7623902 Score = 123 bits (62), Expect = 8e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 74 agatcaaaggaccttcacctgaaatggtagagtaccttggtatgcaaaacttgattaatg 133 ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 7623339 agatcaagggaccttcacctgaaatggtagaataccttggaatgcaaaacttgattaatg 7623398 Query: 134 ctgtaaaggaaagtgttgggctgagcgaagggaaactgctatttgg 179 |||| ||| | ||||| || |||| |||||||||||||| ||||| Sbjct: 7623399 ctgtcaagaacagtgtgggtctgactgaagggaaactgctttttgg 7623444 Score = 83.8 bits (42), Expect = 7e-13 Identities = 42/42 (100%) Strand = Plus / Plus Query: 322 tctacttcaaataacggtggcttcactagtataaggacaaag 363 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 7624012 tctacttcaaataacggtggcttcactagtataaggacaaag 7624053 Score = 79.8 bits (40), Expect = 1e-11 Identities = 130/160 (81%) Strand = Plus / Plus Query: 362 agaattttaccgtgcccgaggacctgtcggcatacgatggtgttgaactacgagttaagg 421 |||||||||| ||||| ||||| ||||| ||||| || ||| |||||||||| ||||||| Sbjct: 7624337 agaattttacagtgcctgaggatctgtcagcatatgacggtattgaactacgtgttaagg 7624396 Query: 422 gtgatggccgtcggtacaaacttatcataagaactagctacgaatgggatactattggct 481 |||| || | ||||| |||||||| | | ||||||| |||||||||||| | |||| Sbjct: 7624397 gtgacgggaggcggtataaacttattgtgcgcactagctttgaatgggatactgtcggct 7624456 Query: 482 ataccgctagctttgacaccatgaagggagaatggcaaag 521 | | || ||||||||||| | ||||| ||||||||||| Sbjct: 7624457 acattgcaagctttgacacgactaagggggaatggcaaag 7624496 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 617 agctcatgttcagcaagtttgaatatgacggaaaactcaatccaacatttgcagaaggt 675 |||||||||| ||||||||||| ||||||||||| || || ||||||||| |||||||| Sbjct: 7624749 agctcatgtttagcaagtttgagtatgacggaaagctgaacccaacatttacagaaggt 7624807 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 1 atagtaggtccaaaggaaggtgatacaccggacaggcagaagtat 45 ||||| || ||||||||||| |||||||| ||||||||||||||| Sbjct: 7623020 atagttgggccaaaggaaggcgatacaccagacaggcagaagtat 7623064 Score = 44.1 bits (22), Expect = 0.60 Identities = 61/74 (82%) Strand = Plus / Plus Query: 530 tacctttctcttcgctgatacctgtatttcgcgcccgtaccgcaactgatgctccgccct 589 ||||||||||||| |||| |||||||| || ||||| || |||||||| | |||| Sbjct: 7624589 tacctttctcttcactgaatcctgtattccgtgcccgcactatgcctgatgctgcaccct 7624648 Query: 590 ttgatgcaagcaat 603 |||||||||||||| Sbjct: 7624649 ttgatgcaagcaat 7624662 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ggcatcaagttttttgaacc 71 |||||||||||||||||||| Sbjct: 7623161 ggcatcaagttttttgaacc 7623180
>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_E05 Length = 101333 Score = 145 bits (73), Expect = 2e-31 Identities = 115/129 (89%) Strand = Plus / Plus Query: 186 aggcaatttatgtggaaagtttgtgtggggagcacttgacgatgttgtaatgggcggtgt 245 |||||| |||| |||||| |||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 40534 aggcaacttatccggaaagattgtttggggagcacttgatgatgttgtgatgggaggtgt 40593 Query: 246 tagtgaaagtgcattccaaatccaaccaacaggaagtgaaactggtgaagcaactggatt 305 ||||||||| ||||||||||||||||||||||||||||||||| || | |||| ||||| Sbjct: 40594 tagtgaaagcacattccaaatccaaccaacaggaagtgaaactgatggaccaaccggatt 40653 Query: 306 gttcaaagg 314 ||||||||| Sbjct: 40654 gttcaaagg 40662 Score = 123 bits (62), Expect = 8e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 74 agatcaaaggaccttcacctgaaatggtagagtaccttggtatgcaaaacttgattaatg 133 ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 40099 agatcaagggaccttcacctgaaatggtagaataccttggaatgcaaaacttgattaatg 40158 Query: 134 ctgtaaaggaaagtgttgggctgagcgaagggaaactgctatttgg 179 |||| ||| | ||||| || |||| |||||||||||||| ||||| Sbjct: 40159 ctgtcaagaacagtgtgggtctgactgaagggaaactgctttttgg 40204 Score = 83.8 bits (42), Expect = 7e-13 Identities = 42/42 (100%) Strand = Plus / Plus Query: 322 tctacttcaaataacggtggcttcactagtataaggacaaag 363 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 40772 tctacttcaaataacggtggcttcactagtataaggacaaag 40813 Score = 79.8 bits (40), Expect = 1e-11 Identities = 130/160 (81%) Strand = Plus / Plus Query: 362 agaattttaccgtgcccgaggacctgtcggcatacgatggtgttgaactacgagttaagg 421 |||||||||| ||||| ||||| ||||| ||||| || ||| |||||||||| ||||||| Sbjct: 41097 agaattttacagtgcctgaggatctgtcagcatatgacggtattgaactacgtgttaagg 41156 Query: 422 gtgatggccgtcggtacaaacttatcataagaactagctacgaatgggatactattggct 481 |||| || | ||||| |||||||| | | ||||||| |||||||||||| | |||| Sbjct: 41157 gtgacgggaggcggtataaacttattgtgcgcactagctttgaatgggatactgtcggct 41216 Query: 482 ataccgctagctttgacaccatgaagggagaatggcaaag 521 | | || ||||||||||| | ||||| ||||||||||| Sbjct: 41217 acattgcaagctttgacacgactaagggggaatggcaaag 41256 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 617 agctcatgttcagcaagtttgaatatgacggaaaactcaatccaacatttgcagaaggt 675 |||||||||| ||||||||||| ||||||||||| || || ||||||||| |||||||| Sbjct: 41509 agctcatgtttagcaagtttgagtatgacggaaagctgaacccaacatttacagaaggt 41567 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 1 atagtaggtccaaaggaaggtgatacaccggacaggcagaagtat 45 ||||| || ||||||||||| |||||||| ||||||||||||||| Sbjct: 39780 atagttgggccaaaggaaggcgatacaccagacaggcagaagtat 39824 Score = 44.1 bits (22), Expect = 0.60 Identities = 61/74 (82%) Strand = Plus / Plus Query: 530 tacctttctcttcgctgatacctgtatttcgcgcccgtaccgcaactgatgctccgccct 589 ||||||||||||| |||| |||||||| || ||||| || |||||||| | |||| Sbjct: 41349 tacctttctcttcactgaatcctgtattccgtgcccgcactatgcctgatgctgcaccct 41408 Query: 590 ttgatgcaagcaat 603 |||||||||||||| Sbjct: 41409 ttgatgcaagcaat 41422 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ggcatcaagttttttgaacc 71 |||||||||||||||||||| Sbjct: 39921 ggcatcaagttttttgaacc 39940
>gb|AF369888.1| Pisum sativum UOS1 mRNA, complete cds Length = 2173 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 575 ctgatgctccgccctttgatgcaagcaatatcactgcattacagctcatgttcagcaagt 634 |||||||||||| |||||||| ||||| || | || | ||||||||||||||||||| Sbjct: 1249 ctgatgctccgcaatttgatgccagcaacattgcatcactgcagctcatgttcagcaagt 1308 Query: 635 ttgaatatga 644 |||||||||| Sbjct: 1309 ttgaatatga 1318 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 329 caaataacggtggcttcactagtataaggacaaagaatttt 369 ||||||| |||||||| || ||||| || |||||||||||| Sbjct: 1003 caaataatggtggctttacaagtatcagaacaaagaatttt 1043
>ref|NM_117997.4| Arabidopsis thaliana unknown protein AT4G18810 mRNA, complete cds Length = 2010 Score = 56.0 bits (28), Expect = 2e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 549 acctgtatttcgcgcccgtaccgcaactgatgctccgccctttgatgcaagcaatatcac 608 ||||||||||||||| ||||| | || ||||| || || ||| ||||||||| ||||| Sbjct: 1175 acctgtatttcgcgcacgtacagttacagatgcaccaccttttaatgcaagcagtatcat 1234 Query: 609 tgcattacagctcatgttcagcaagtttgaatatga 644 | || ||||||| ||||| ||||| ||||| ||||| Sbjct: 1235 ttcactacagcttatgtttagcaaatttgagtatga 1270 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 211 tggggagcacttgacgatgttgtaatgggcggtgttagtgaaagt 255 ||||||||| | || |||||||||||||| ||||| || |||||| Sbjct: 837 tggggagcattggatgatgttgtaatgggaggtgtcagcgaaagt 881
>gb|BT008364.1| Arabidopsis thaliana At4g18810 gene, complete cds Length = 1791 Score = 56.0 bits (28), Expect = 2e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 549 acctgtatttcgcgcccgtaccgcaactgatgctccgccctttgatgcaagcaatatcac 608 ||||||||||||||| ||||| | || ||||| || || ||| ||||||||| ||||| Sbjct: 1140 acctgtatttcgcgcacgtacagttacagatgcaccaccttttaatgcaagcagtatcat 1199 Query: 609 tgcattacagctcatgttcagcaagtttgaatatga 644 | || ||||||| ||||| ||||| ||||| ||||| Sbjct: 1200 ttcactacagcttatgtttagcaaatttgagtatga 1235 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 211 tggggagcacttgacgatgttgtaatgggcggtgttagtgaaagt 255 ||||||||| | || |||||||||||||| ||||| || |||||| Sbjct: 802 tggggagcattggatgatgttgtaatgggaggtgtcagcgaaagt 846
>gb|AY072319.1| Arabidopsis thaliana putative protein (At4g18810; F28A21.220) mRNA, complete cds Length = 2007 Score = 56.0 bits (28), Expect = 2e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 549 acctgtatttcgcgcccgtaccgcaactgatgctccgccctttgatgcaagcaatatcac 608 ||||||||||||||| ||||| | || ||||| || || ||| ||||||||| ||||| Sbjct: 1175 acctgtatttcgcgcacgtacagttacagatgcaccaccttttaatgcaagcagtatcat 1234 Query: 609 tgcattacagctcatgttcagcaagtttgaatatga 644 | || ||||||| ||||| ||||| ||||| ||||| Sbjct: 1235 ttcactacagcttatgtttagcaaatttgagtatga 1270 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 211 tggggagcacttgacgatgttgtaatgggcggtgttagtgaaagt 255 ||||||||| | || |||||||||||||| ||||| || |||||| Sbjct: 837 tggggagcattggatgatgttgtaatgggaggtgtcagcgaaagt 881
>emb|BX827549.1|CNS0A4CE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS72ZB07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1925 Score = 56.0 bits (28), Expect = 2e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 549 acctgtatttcgcgcccgtaccgcaactgatgctccgccctttgatgcaagcaatatcac 608 ||||||||||||||| ||||| | || ||||| || || ||| ||||||||| ||||| Sbjct: 1154 acctgtatttcgcgcacgtacagttacagatgcaccaccttttaatgcaagcagtatcat 1213 Query: 609 tgcattacagctcatgttcagcaagtttgaatatga 644 | || ||||||| ||||| ||||| ||||| ||||| Sbjct: 1214 ttcactacagcttatgtttagcaaatttgagtatga 1249 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 211 tggggagcacttgacgatgttgtaatgggcggtgttagtgaaagt 255 ||||||||| | || |||||||||||||| ||||| || |||||| Sbjct: 816 tggggagcattggatgatgttgtaatgggaggtgtcagcgaaagt 860
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 402 tgttgaactacgagttaagggtgatgg 428 |||||||| |||||||||||||||||| Sbjct: 1233196 tgttgaacaacgagttaagggtgatgg 1233222
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 601 aatatcactgcattacagctca 622 |||||||||||||||||||||| Sbjct: 1503560 aatatcactgcattacagctca 1503539
>gb|AC164316.3| Mus musculus BAC clone RP23-16B4 from chromosome 6, complete sequence Length = 222892 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 gaaagtgcattccaaatccaa 270 ||||||||||||||||||||| Sbjct: 140247 gaaagtgcattccaaatccaa 140267
>gb|AC119848.8| Mus musculus chromosome 7, clone RP23-73B20, complete sequence Length = 239297 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 279 aagtgaaactggtgaagcaactgga 303 |||||||||||| |||||||||||| Sbjct: 82806 aagtgaaactggagaagcaactgga 82782
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49 Length = 199075 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 211 tggggagcacttgacgatgttgtaatgggcggtgttagtgaaagt 255 ||||||||| | || |||||||||||||| ||||| || |||||| Sbjct: 102421 tggggagcattggatgatgttgtaatgggaggtgtcagcgaaagt 102377
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project) Length = 94301 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 211 tggggagcacttgacgatgttgtaatgggcggtgttagtgaaagt 255 ||||||||| | || |||||||||||||| ||||| || |||||| Sbjct: 83140 tggggagcattggatgatgttgtaatgggaggtgtcagcgaaagt 83096
>gb|AC158664.5| Mus musculus 6 BAC RP23-24F17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 232894 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 gaaagtgcattccaaatccaa 270 ||||||||||||||||||||| Sbjct: 3324 gaaagtgcattccaaatccaa 3344
>gb|AC120854.15| Mus musculus chromosome 7, clone RP23-329B6, complete sequence Length = 205102 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 279 aagtgaaactggtgaagcaactgga 303 |||||||||||| |||||||||||| Sbjct: 34734 aagtgaaactggagaagcaactgga 34758
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 atttggattcaaaggcaatttatg 197 |||| ||||||||||||||||||| Sbjct: 1262255 atttcgattcaaaggcaatttatg 1262278
>gb|AC009842.9| Drosophila melanogaster clone BACR04C12, complete sequence Length = 163183 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 tttatgtggaaagtttgtgtgggg 215 |||||||| ||||||||||||||| Sbjct: 44836 tttatgtgaaaagtttgtgtgggg 44813
>gb|AC124361.4| Mus musculus BAC clone RP24-528I8 from chromosome 1, complete sequence Length = 172848 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tgctgtaaaggaaagtgttg 151 |||||||||||||||||||| Sbjct: 34577 tgctgtaaaggaaagtgttg 34558
>ref|XM_824043.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.2490) partial mRNA Length = 2757 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 aaactggtgaagcaactgga 303 |||||||||||||||||||| Sbjct: 1576 aaactggtgaagcaactgga 1595
>emb|CR936849.22| Mouse DNA sequence from clone DN-250A21 on chromosome 3, complete sequence Length = 153083 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 atttatgtggaaagtttgtgtggg 214 |||||||||||||||| ||||||| Sbjct: 7577 atttatgtggaaagttggtgtggg 7600
>ref|XM_648503.1| Entamoeba histolytica HM-1:IMSS CDP-alcohol phosphatidyltransferase (78.t00028) partial mRNA Length = 1119 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 accaacaggaagtgaaactg 289 |||||||||||||||||||| Sbjct: 210 accaacaggaagtgaaactg 229
>emb|AL391819.6| Human DNA sequence from clone RP11-8L13 on chromosome 9 Contains the 5' end of the TRPM3 gene for transient receptor potential cation channel subfamily M, member 3 (MLSN2, LTRPC3, FLJ11726) and a CpG island, complete sequence Length = 161802 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aagcattagaatacctttct 538 |||||||||||||||||||| Sbjct: 92515 aagcattagaatacctttct 92496
>emb|AL355863.18| Human DNA sequence from clone RP11-479A21 on chromosome 10 Contains an HSPC023 protein (HSPC023) pseudogene, complete sequence Length = 151552 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gcatcgtgtctacttcaaat 333 |||||||||||||||||||| Sbjct: 136388 gcatcgtgtctacttcaaat 136407
>emb|BX927387.9| Zebrafish DNA sequence from clone DKEY-32H20 in linkage group 6, complete sequence Length = 175517 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 607 actgcattacagctcatgttcagc 630 ||||||||||| |||||||||||| Sbjct: 84440 actgcattacacctcatgttcagc 84417
>gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, complete sequence Length = 171289 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aaaggaaagtgttgggctga 157 |||||||||||||||||||| Sbjct: 88368 aaaggaaagtgttgggctga 88349
>gb|AC092954.4| Homo sapiens 3 BAC RP11-368I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166452 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cacctgaaatggtagagtac 108 |||||||||||||||||||| Sbjct: 45041 cacctgaaatggtagagtac 45022
>emb|BX548164.6| Zebrafish DNA sequence from clone DKEY-181J24 in linkage group 2, complete sequence Length = 89692 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 atgcaaaacttgattaatgc 134 |||||||||||||||||||| Sbjct: 74416 atgcaaaacttgattaatgc 74397
>gb|AC021035.8| Homo sapiens chromosome 10 clone RP11-381K7, complete sequence Length = 173791 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gcatcgtgtctacttcaaat 333 |||||||||||||||||||| Sbjct: 164759 gcatcgtgtctacttcaaat 164740
>ref|XM_681599.1| PREDICTED: Danio rerio similar to MGC86179 protein (LOC558396), mRNA Length = 1697 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 607 actgcattacagctcatgttcagc 630 ||||||||||| |||||||||||| Sbjct: 837 actgcattacacctcatgttcagc 860
>gb|AC008099.5| Drosophila melanogaster, chromosome 2L, region 25A-25A, BAC clone BACR37J18, complete sequence Length = 199916 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 tttatgtggaaagtttgtgtgggg 215 |||||||| ||||||||||||||| Sbjct: 166858 tttatgtgaaaagtttgtgtgggg 166835
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 aagtgaaactggtgaagcaa 298 |||||||||||||||||||| Sbjct: 7302947 aagtgaaactggtgaagcaa 7302966
>gb|AC092704.10| Homo sapiens chromosome 18, clone RP11-687D19, complete sequence Length = 185257 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 atttatgtggaaagtttgtg 210 |||||||||||||||||||| Sbjct: 59157 atttatgtggaaagtttgtg 59138
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 aagtgaaactggtgaagcaa 298 |||||||||||||||||||| Sbjct: 104377 aagtgaaactggtgaagcaa 104396
>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete sequence Length = 148751 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ggaaagtttgtgtggggagc 218 |||||||||||||||||||| Sbjct: 102334 ggaaagtttgtgtggggagc 102353
>emb|AL954822.8| Zebrafish DNA sequence from clone CH211-222M15 in linkage group 15, complete sequence Length = 219495 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cttggtatgcaaaacttgat 128 |||||||||||||||||||| Sbjct: 115403 cttggtatgcaaaacttgat 115384
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 atggccgtcggtacaaactt 444 |||||||||||||||||||| Sbjct: 71477 atggccgtcggtacaaactt 71458
>gb|AE003576.5| Drosophila melanogaster chromosome 2L, section 15 of 83 of the complete sequence Length = 289893 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 tttatgtggaaagtttgtgtgggg 215 |||||||| ||||||||||||||| Sbjct: 277037 tttatgtgaaaagtttgtgtgggg 277060
>gb|AC166336.15| Mus musculus chromosome 1, clone RP24-74G12, complete sequence Length = 215765 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tgctgtaaaggaaagtgttg 151 |||||||||||||||||||| Sbjct: 103768 tgctgtaaaggaaagtgttg 103749
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tatgcaaaacttgattaatg 133 |||||||||||||||||||| Sbjct: 1030283 tatgcaaaacttgattaatg 1030264
>emb|AL845310.4| Mouse DNA sequence from clone RP23-64M1 on chromosome 3, complete sequence Length = 122356 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 atttatgtggaaagtttgtgtggg 214 |||||||||||||||| ||||||| Sbjct: 70738 atttatgtggaaagttggtgtggg 70761 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,309,576 Number of Sequences: 3902068 Number of extensions: 5309576 Number of successful extensions: 90289 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90034 Number of HSP's gapped (non-prelim): 249 length of query: 686 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 663 effective length of database: 17,143,297,704 effective search space: 11366006377752 effective search space used: 11366006377752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)