ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal41e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191091.1| Oryza sativa (japonica cultivar-group), predic... 509 e-141
2dbj|AK070194.1| Oryza sativa (japonica cultivar-group) cDNA clon... 509 e-141
3dbj|AK069848.1| Oryza sativa (japonica cultivar-group) cDNA clon... 509 e-141
4gb|AY111857.1| Zea mays CL19040_1 mRNA sequence 234 2e-58
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
6dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
7dbj|AK119626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
8dbj|AK106744.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
10gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
11emb|AJ845056.1| Ananas comosus var. bracteatus microsatellite DN... 44 0.37
12gb|AE009371.1| Agrobacterium tumefaciens str. C58 linear chromos... 42 1.5
13gb|AE008243.1| Agrobacterium tumefaciens str. C58 linear chromos... 42 1.5
14gb|AC124540.4| Mus musculus BAC clone RP23-361G19 from chromosom... 42 1.5
15gb|AC090699.10| Homo sapiens chromosome 17, clone RP11-794C22, c... 42 1.5
16gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 5.8
17gb|DQ214134.1| Taeniopygia guttata clone 0062P0001C05 leucine-ri... 40 5.8
18gb|AY596974.1| Mus musculus tuberin-like protein 1 isoform 3 (Ga... 40 5.8
19gb|AY596973.1| Mus musculus tuberin-like protein 1 isoform 1 (Ga... 40 5.8
20gb|AY596972.1| Mus musculus tuberin-like protein 1 isoform 2 (Ga... 40 5.8
21gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome... 40 5.8
22gb|AC129221.3| Mus musculus BAC clone RP24-480M20 from chromosom... 40 5.8
23ref|XM_899156.1| PREDICTED: Mus musculus similar to EC2-V2R pher... 40 5.8
24ref|XM_899167.2| PREDICTED: Mus musculus similar to EC2-V2R pher... 40 5.8
25ref|XM_485855.3| PREDICTED: Mus musculus similar to EC2-V2R pher... 40 5.8
26emb|CR855374.5| Zebrafish DNA sequence from clone CH211-9M16 in ... 40 5.8
27ref|XM_448732.1| Candida glabrata CBS138, CAGL0K11880g partial mRNA 40 5.8
28ref|XM_547775.2| PREDICTED: Canis familiaris similar to GTPase a... 40 5.8
29gb|AC130276.2| Homo sapiens chromosome 3 clone RP11-1076P5, comp... 40 5.8
30gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Canc... 40 5.8
31emb|CR380957.1| Candida glabrata strain CBS138 chromosome K comp... 40 5.8
32gb|AC154715.2| Mus musculus BAC clone RP24-361A22 from chromosom... 40 5.8
33gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.8
34dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.8
35dbj|AK153664.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 5.8
36gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.8
37dbj|AK046680.1| Mus musculus 4 days neonate male adipose cDNA, R... 40 5.8
38dbj|AK042116.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 5.8
39dbj|AK082010.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.8
40gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 5.8
41ref|XM_578542.1| PREDICTED: Rattus norvegicus GTPase activating ... 40 5.8
42emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, c... 40 5.8
43dbj|AK129236.1| Mus musculus mRNA for mKIAA0884 protein 40 5.8
44emb|AL356596.3|CNS05TDF Human chromosome 14 DNA sequence BAC R-3... 40 5.8
45gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome... 40 5.8
46ref|NM_019994.4| Mus musculus GTPase activating RANGAP domain-li... 40 5.8
47ref|NM_001003719.1| Mus musculus GTPase activating RANGAP domain... 40 5.8 
>ref|NM_191091.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2475

 Score =  509 bits (257), Expect = e-141
 Identities = 383/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggcgctggtgacggcggcgcagggaggctccacggacacctcggtgctctccatgctc 60
           ||||||||||  |||||||||||||||||| ||  ||  || |||||  ||  |||||||
Sbjct: 19  gaggcgctggctacggcggcgcagggaggcaccgtggggacgtcggttttcgacatgctc 78

                                                                       
Query: 61  aagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggcttcctcatg 120
           |||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||
Sbjct: 79  aagtacgccgtgctgcccattgccaaggtgtttaccgtctgtttcatggggttcctcatg 138

                                                                       
Query: 121 gccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaacgggcttgtg 180
           ||| | ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 139 gcctctaagtatgtcaatatcctccagccgaacggccgcaagcttctcaatgggcttgtg 198

                                                                       
Query: 181 ttctcgcttctacttccttgccttatattttcccaactgggcagcgcgatcactctcgag 240
           ||||||||||||||||||||||||||||||||||||||||| || || |||||  |||| 
Sbjct: 199 ttctcgcttctacttccttgccttatattttcccaactgggtagagcaatcacaatcgaa 258

                                                                       
Query: 241 aagttggtgcagtggtggtatattccagtaaatattgttgtaggtgccgtgtctggatcc 300
           ||| || |||| ||||||||||||||||||||||||||||||||||| ||||| || || 
Sbjct: 259 aagatgctgcaatggtggtatattccagtaaatattgttgtaggtgcagtgtcaggctct 318

                                                                       
Query: 301 ttgattggctttgtggtggcgtctatcatccgacctccttatccatacttcaagtttact 360
           |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 319 ttgattggctttgtggtggcttctatcatccgaccaccttatccatacttcaagttcact 378

                                                                       
Query: 361 gttatccacattggaatagggaacattggaaatatacctctggttctcattgcagcatta 420
           || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgattcacattggaatagggaatattggaaatatacctctggttctcattgcagcatta 438

                
Query: 421 tgtcg 425
           |||||
Sbjct: 439 tgtcg 443
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>dbj|AK070194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041H12, full
           insert sequence
          Length = 1930

 Score =  509 bits (257), Expect = e-141
 Identities = 383/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggcgctggtgacggcggcgcagggaggctccacggacacctcggtgctctccatgctc 60
           ||||||||||  |||||||||||||||||| ||  ||  || |||||  ||  |||||||
Sbjct: 219 gaggcgctggctacggcggcgcagggaggcaccgtggggacgtcggttttcgacatgctc 278

                                                                       
Query: 61  aagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggcttcctcatg 120
           |||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||
Sbjct: 279 aagtacgccgtgctgcccattgccaaggtgtttaccgtctgtttcatggggttcctcatg 338

                                                                       
Query: 121 gccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaacgggcttgtg 180
           ||| | ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 339 gcctctaagtatgtcaatatcctccagccgaacggccgcaagcttctcaatgggcttgtg 398

                                                                       
Query: 181 ttctcgcttctacttccttgccttatattttcccaactgggcagcgcgatcactctcgag 240
           ||||||||||||||||||||||||||||||||||||||||| || || |||||  |||| 
Sbjct: 399 ttctcgcttctacttccttgccttatattttcccaactgggtagagcaatcacaatcgaa 458

                                                                       
Query: 241 aagttggtgcagtggtggtatattccagtaaatattgttgtaggtgccgtgtctggatcc 300
           ||| || |||| ||||||||||||||||||||||||||||||||||| ||||| || || 
Sbjct: 459 aagatgctgcaatggtggtatattccagtaaatattgttgtaggtgcagtgtcaggctct 518

                                                                       
Query: 301 ttgattggctttgtggtggcgtctatcatccgacctccttatccatacttcaagtttact 360
           |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 519 ttgattggctttgtggtggcttctatcatccgaccaccttatccatacttcaagttcact 578

                                                                       
Query: 361 gttatccacattggaatagggaacattggaaatatacctctggttctcattgcagcatta 420
           || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtgattcacattggaatagggaatattggaaatatacctctggttctcattgcagcatta 638

                
Query: 421 tgtcg 425
           |||||
Sbjct: 639 tgtcg 643
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>dbj|AK069848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034N13, full
           insert sequence
          Length = 1975

 Score =  509 bits (257), Expect = e-141
 Identities = 383/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggcgctggtgacggcggcgcagggaggctccacggacacctcggtgctctccatgctc 60
           ||||||||||  |||||||||||||||||| ||  ||  || |||||  ||  |||||||
Sbjct: 195 gaggcgctggctacggcggcgcagggaggcaccgtggggacgtcggttttcgacatgctc 254

                                                                       
Query: 61  aagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggcttcctcatg 120
           |||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||
Sbjct: 255 aagtacgccgtgctgcccattgccaaggtgtttaccgtctgtttcatggggttcctcatg 314

                                                                       
Query: 121 gccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaacgggcttgtg 180
           ||| | ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 315 gcctctaagtatgtcaatatcctccagccgaacggccgcaagcttctcaatgggcttgtg 374

                                                                       
Query: 181 ttctcgcttctacttccttgccttatattttcccaactgggcagcgcgatcactctcgag 240
           ||||||||||||||||||||||||||||||||||||||||| || || |||||  |||| 
Sbjct: 375 ttctcgcttctacttccttgccttatattttcccaactgggtagagcaatcacaatcgaa 434

                                                                       
Query: 241 aagttggtgcagtggtggtatattccagtaaatattgttgtaggtgccgtgtctggatcc 300
           ||| || |||| ||||||||||||||||||||||||||||||||||| ||||| || || 
Sbjct: 435 aagatgctgcaatggtggtatattccagtaaatattgttgtaggtgcagtgtcaggctct 494

                                                                       
Query: 301 ttgattggctttgtggtggcgtctatcatccgacctccttatccatacttcaagtttact 360
           |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 495 ttgattggctttgtggtggcttctatcatccgaccaccttatccatacttcaagttcact 554

                                                                       
Query: 361 gttatccacattggaatagggaacattggaaatatacctctggttctcattgcagcatta 420
           || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtgattcacattggaatagggaatattggaaatatacctctggttctcattgcagcatta 614

                
Query: 421 tgtcg 425
           |||||
Sbjct: 615 tgtcg 619
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>gb|AY111857.1| Zea mays CL19040_1 mRNA sequence
          Length = 547

 Score =  234 bits (118), Expect = 2e-58
 Identities = 172/190 (90%)
 Strand = Plus / Plus

                                                                       
Query: 54  catgctcaagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggctt 113
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 351 catgctcaagtacgccgtgctgcccatcgccaaggtgttcactgtctgcttcatggggtt 410

                                                                       
Query: 114 cctcatggccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaacgg 173
           ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 411 ccttatggcctccaagtacgtcaacattctccagcccaacggccgcaagcttctcaatgg 470

                                                                       
Query: 174 gcttgtgttctcgcttctacttccttgccttatattttcccaactgggcagcgcgatcac 233
           ||||| ||| || ||||| ||||| |||||||||||||| ||| |||| || || |||||
Sbjct: 471 gcttgggttttcccttctgcttccatgccttatattttcgcaattgggtagagcaatcac 530

                     
Query: 234 tctcgagaag 243
           | ||||||||
Sbjct: 531 tatcgagaag 540
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  180 bits (91), Expect = 2e-42
 Identities = 118/127 (92%)
 Strand = Plus / Plus

                                                                            
Query: 254      ggtggtatattccagtaaatattgttgtaggtgccgtgtctggatccttgattggctttg 313
                |||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||
Sbjct: 34829595 ggtggtatattccagtaaatattgttgtaggtgcagtgtcaggctctttgattggctttg 34829654

                                                                            
Query: 314      tggtggcgtctatcatccgacctccttatccatacttcaagtttactgttatccacattg 373
                ||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||
Sbjct: 34829655 tggtggcttctatcatccgaccaccttatccatacttcaagttcactgtgattcacattg 34829714

                       
Query: 374      gaatagg 380
                |||||||
Sbjct: 34829715 gaatagg 34829721



 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1        gaggcgctggtgacggcggcgcagggaggctccacggacacctcggtgctctccatgctc 60
                ||||||||||  |||||||||||||||||| ||  ||  || |||||  ||  |||||||
Sbjct: 34828708 gaggcgctggctacggcggcgcagggaggcaccgtggggacgtcggttttcgacatgctc 34828767

                                                                            
Query: 61       aagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggcttcctcatg 120
                |||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||
Sbjct: 34828768 aagtacgccgtgctgcccattgccaaggtgtttaccgtctgtttcatggggttcctcatg 34828827

                                                                  
Query: 121      gccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaa 170
                ||| | ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 34828828 gcctctaagtatgtcaatatcctccagccgaacggccgcaagcttctcaa 34828877



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                                
Query: 174      gcttgtgttctcgcttctacttccttgccttatattttcccaactggg 221
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34829063 gcttgtgttctcgcttctacttccttgccttatattttcccaactggg 34829110



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                                
Query: 378      agggaacattggaaatatacctctggttctcattgcagcattatgtcg 425
                |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 34829806 agggaatattggaaatatacctctggttctcattgcagcattatgtcg 34829853
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>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0454H12
          Length = 161004

 Score =  180 bits (91), Expect = 2e-42
 Identities = 118/127 (92%)
 Strand = Plus / Plus

                                                                         
Query: 254   ggtggtatattccagtaaatattgttgtaggtgccgtgtctggatccttgattggctttg 313
             |||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||
Sbjct: 88767 ggtggtatattccagtaaatattgttgtaggtgcagtgtcaggctctttgattggctttg 88826

                                                                         
Query: 314   tggtggcgtctatcatccgacctccttatccatacttcaagtttactgttatccacattg 373
             ||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||
Sbjct: 88827 tggtggcttctatcatccgaccaccttatccatacttcaagttcactgtgattcacattg 88886

                    
Query: 374   gaatagg 380
             |||||||
Sbjct: 88887 gaatagg 88893



 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Plus

                                                                         
Query: 1     gaggcgctggtgacggcggcgcagggaggctccacggacacctcggtgctctccatgctc 60
             ||||||||||  |||||||||||||||||| ||  ||  || |||||  ||  |||||||
Sbjct: 87880 gaggcgctggctacggcggcgcagggaggcaccgtggggacgtcggttttcgacatgctc 87939

                                                                         
Query: 61    aagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggcttcctcatg 120
             |||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||
Sbjct: 87940 aagtacgccgtgctgcccattgccaaggtgtttaccgtctgtttcatggggttcctcatg 87999

                                                               
Query: 121   gccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaa 170
             ||| | ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 88000 gcctctaagtatgtcaatatcctccagccgaacggccgcaagcttctcaa 88049



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                             
Query: 174   gcttgtgttctcgcttctacttccttgccttatattttcccaactggg 221
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88235 gcttgtgttctcgcttctacttccttgccttatattttcccaactggg 88282



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                             
Query: 378   agggaacattggaaatatacctctggttctcattgcagcattatgtcg 425
             |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 88978 agggaatattggaaatatacctctggttctcattgcagcattatgtcg 89025
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>dbj|AK119626.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H11, full
           insert sequence
          Length = 1737

 Score =  137 bits (69), Expect = 3e-29
 Identities = 135/157 (85%)
 Strand = Plus / Plus

                                                                       
Query: 54  catgctcaagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggctt 113
           |||| ||| ||||||||||||||||||||||||||| |||  ||||||||||||||| ||
Sbjct: 244 catgttcaggtacgccgtgctgcccatcgccaaggtgttcgtcgtctgcttcatggggtt 303

                                                                       
Query: 114 cctcatggccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaacgg 173
           |||||||||  |||||  ||||  | | ||| |||||| |||||||||||||||||| | 
Sbjct: 304 cctcatggcgtccaagcgcgtcggcgtgctcaagcccagcggccgcaagcttctcaatgc 363

                                                
Query: 174 gcttgtgttctcgcttctacttccttgccttatattt 210
           |||||||||||| || || ||||||||||| ||||||
Sbjct: 364 gcttgtgttctctctgctccttccttgcctaatattt 400



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 337 ccttatccatacttcaagtttactgttatccacattggaatagggaacattggaaatata 396
           |||||||||||||||||||| ||  | |  ||||||||||||||||||||||||||||||
Sbjct: 527 ccttatccatacttcaagttcaccatcactcacattggaatagggaacattggaaatata 586

             
Query: 397 cc 398
           ||
Sbjct: 587 cc 588
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>dbj|AK106744.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B08, full
           insert sequence
          Length = 1705

 Score =  137 bits (69), Expect = 3e-29
 Identities = 135/157 (85%)
 Strand = Plus / Plus

                                                                       
Query: 54  catgctcaagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggctt 113
           |||| ||| ||||||||||||||||||||||||||| |||  ||||||||||||||| ||
Sbjct: 208 catgttcaggtacgccgtgctgcccatcgccaaggtgttcgtcgtctgcttcatggggtt 267

                                                                       
Query: 114 cctcatggccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaacgg 173
           |||||||||  |||||  ||||  | | ||| |||||| |||||||||||||||||| | 
Sbjct: 268 cctcatggcgtccaagcgcgtcggcgtgctcaagcccagcggccgcaagcttctcaatgc 327

                                                
Query: 174 gcttgtgttctcgcttctacttccttgccttatattt 210
           |||||||||||| || || ||||||||||| ||||||
Sbjct: 328 gcttgtgttctctctgctccttccttgcctaatattt 364



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 337 ccttatccatacttcaagtttactgttatccacattggaatagggaacattggaaatata 396
           |||||||||||||||||||| ||  | |  ||||||||||||||||||||||||||||||
Sbjct: 491 ccttatccatacttcaagttcaccatcactcacattggaatagggaacattggaaatata 550

             
Query: 397 cc 398
           ||
Sbjct: 551 cc 552
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  105 bits (53), Expect = 1e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                            
Query: 54       catgctcaagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggctt 113
                |||| ||| ||||||||||||||||||||||||||| |||  ||||||||||||||| ||
Sbjct: 23555184 catgttcaggtacgccgtgctgcccatcgccaaggtgttcgtcgtctgcttcatggggtt 23555125

                                                                         
Query: 114      cctcatggccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaa 170
                |||||||||  |||||  ||||  | | ||| |||||| ||||||||||||||||||
Sbjct: 23555124 cctcatggcgtccaagcgcgtcggcgtgctcaagcccagcggccgcaagcttctcaa 23555068



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 174      gcttgtgttctcgcttctacttccttgccttatattt 210
                |||||||||||| || || ||||||||||| ||||||
Sbjct: 23554910 gcttgtgttctctctgctccttccttgcctaatattt 23554874



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 378      agggaacattggaaatatacc 398
                |||||||||||||||||||||
Sbjct: 23554492 agggaacattggaaatatacc 23554472



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 337      ccttatccatacttcaagtttactgttatccacattggaatagg 380
                |||||||||||||||||||| ||  | |  ||||||||||||||
Sbjct: 23554624 ccttatccatacttcaagttcaccatcactcacattggaatagg 23554581
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>gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0095J22, complete sequence
          Length = 151730

 Score =  105 bits (53), Expect = 1e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                         
Query: 54    catgctcaagtacgccgtgctgcccatcgccaaggtcttcaccgtctgcttcatgggctt 113
             |||| ||| ||||||||||||||||||||||||||| |||  ||||||||||||||| ||
Sbjct: 92356 catgttcaggtacgccgtgctgcccatcgccaaggtgttcgtcgtctgcttcatggggtt 92297

                                                                      
Query: 114   cctcatggccaccaagtacgtcaacatcctccagcccaacggccgcaagcttctcaa 170
             |||||||||  |||||  ||||  | | ||| |||||| ||||||||||||||||||
Sbjct: 92296 cctcatggcgtccaagcgcgtcggcgtgctcaagcccagcggccgcaagcttctcaa 92240



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 174   gcttgtgttctcgcttctacttccttgccttatattt 210
             |||||||||||| || || ||||||||||| ||||||
Sbjct: 92082 gcttgtgttctctctgctccttccttgcctaatattt 92046



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 378   agggaacattggaaatatacc 398
             |||||||||||||||||||||
Sbjct: 91664 agggaacattggaaatatacc 91644



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 337   ccttatccatacttcaagtttactgttatccacattggaatagg 380
             |||||||||||||||||||| ||  | |  ||||||||||||||
Sbjct: 91796 ccttatccatacttcaagttcaccatcactcacattggaatagg 91753
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>emb|AJ845056.1| Ananas comosus var. bracteatus microsatellite DNA, clone mAcCIR026
          Length = 429

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 70/86 (81%)
 Strand = Plus / Plus

                                                                       
Query: 292 tctggatccttgattggctttgtggtggcgtctatcatccgacctccttatccatacttc 351
           ||||| |||||||||||  || | ||||| || || |||||||| |||||||| || |||
Sbjct: 232 tctggctccttgattggtcttatagtggcatccattatccgacccccttatccctatttc 291

                                     
Query: 352 aagtttactgttatccacattggaat 377
           ||||| ||  ||||||| || |||||
Sbjct: 292 aagttcaccattatccatataggaat 317
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>gb|AE009371.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 141 of
            187 of the complete sequence
          Length = 10837

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 79   atcgccaaggtcttcaccgtc 99
            |||||||||||||||||||||
Sbjct: 3310 atcgccaaggtcttcaccgtc 3330
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>gb|AE008243.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 47 of
            187 of the complete sequence
          Length = 11874

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 79   atcgccaaggtcttcaccgtc 99
            |||||||||||||||||||||
Sbjct: 7529 atcgccaaggtcttcaccgtc 7509
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>gb|AC124540.4| Mus musculus BAC clone RP23-361G19 from chromosome 19, complete
             sequence
          Length = 199168

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 391   aatatacctctggttctcatt 411
             |||||||||||||||||||||
Sbjct: 99450 aatatacctctggttctcatt 99430
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>gb|AC090699.10| Homo sapiens chromosome 17, clone RP11-794C22, complete sequence
          Length = 138379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   tcaacatcctccagcccaacg 154
             |||||||||||||||||||||
Sbjct: 48829 tcaacatcctccagcccaacg 48849
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 3       ggcgctggtgacggcggcgcagggaggc 30
               |||||||| ||||||||||| |||||||
Sbjct: 3737379 ggcgctggcgacggcggcgctgggaggc 3737352
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>gb|DQ214134.1| Taeniopygia guttata clone 0062P0001C05 leucine-rich repeat protein
           (LRP15)-like mRNA, complete sequence
          Length = 1362

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 catgggcttcctcatggcca 124
           ||||||||||||||||||||
Sbjct: 128 catgggcttcctcatggcca 109
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>gb|AY596974.1| Mus musculus tuberin-like protein 1 isoform 3 (Garnl1) mRNA, complete
            cds, alternatively spliced
          Length = 7891

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1144 cttgccttatattttcccaa 1163
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>gb|AY596973.1| Mus musculus tuberin-like protein 1 isoform 1 (Garnl1) mRNA, complete
            cds, alternatively spliced
          Length = 7919

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1144 cttgccttatattttcccaa 1163
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>gb|AY596972.1| Mus musculus tuberin-like protein 1 isoform 2 (Garnl1) mRNA, complete
            cds
          Length = 7922

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1144 cttgccttatattttcccaa 1163
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>gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome 12, complete sequence
          Length = 187364

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   cttgccttatattttcccaa 216
             ||||||||||||||||||||
Sbjct: 88956 cttgccttatattttcccaa 88975
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>gb|AC129221.3| Mus musculus BAC clone RP24-480M20 from chromosome 7, complete sequence
          Length = 202119

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   cacattggaatagggaacat 386
             ||||||||||||||||||||
Sbjct: 54077 cacattggaatagggaacat 54096
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>ref|XM_899156.1| PREDICTED: Mus musculus similar to EC2-V2R pheromone receptor,
            transcript variant 2 (LOC434113), mRNA
          Length = 2436

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  cacattggaatagggaacat 386
            ||||||||||||||||||||
Sbjct: 1981 cacattggaatagggaacat 1962
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>ref|XM_899167.2| PREDICTED: Mus musculus similar to EC2-V2R pheromone receptor,
            transcript variant 3 (LOC434113), mRNA
          Length = 2592

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  cacattggaatagggaacat 386
            ||||||||||||||||||||
Sbjct: 2137 cacattggaatagggaacat 2118
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>ref|XM_485855.3| PREDICTED: Mus musculus similar to EC2-V2R pheromone receptor,
            transcript variant 1 (LOC434113), mRNA
          Length = 2850

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  cacattggaatagggaacat 386
            ||||||||||||||||||||
Sbjct: 2123 cacattggaatagggaacat 2104
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>emb|CR855374.5| Zebrafish DNA sequence from clone CH211-9M16 in linkage group 16,
             complete sequence
          Length = 78429

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   acattggaaatatacctctg 402
             ||||||||||||||||||||
Sbjct: 11110 acattggaaatatacctctg 11129
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>ref|XM_448732.1| Candida glabrata CBS138, CAGL0K11880g partial mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  aggtcttcaccgtctgcttc 105
           ||||||||||||||||||||
Sbjct: 446 aggtcttcaccgtctgcttc 465
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>ref|XM_547775.2| PREDICTED: Canis familiaris similar to GTPase activating Rap/RanGAP
           domain-like 1 isoform 1 (LOC490653), mRNA
          Length = 4494

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 cttgccttatattttcccaa 216
           ||||||||||||||||||||
Sbjct: 741 cttgccttatattttcccaa 760
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>gb|AC130276.2| Homo sapiens chromosome 3 clone RP11-1076P5, complete sequence
          Length = 74595

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   cgtcaacatcctccagccca 151
             ||||||||||||||||||||
Sbjct: 18871 cgtcaacatcctccagccca 18890
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>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 190580

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   ggtgcagtggtggtatattccagt 269
             ||||||| ||||||||||||||||
Sbjct: 27103 ggtgcagaggtggtatattccagt 27126
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>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      aggtcttcaccgtctgcttc 105
               ||||||||||||||||||||
Sbjct: 1146501 aggtcttcaccgtctgcttc 1146520
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>gb|AC154715.2| Mus musculus BAC clone RP24-361A22 from chromosome 16, complete sequence
          Length = 172362

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    acttccttgccttatatttt 211
              ||||||||||||||||||||
Sbjct: 112251 acttccttgccttatatttt 112232
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     tccagcccaacggccgcaag 162
               ||||||||||||||||||||
Sbjct: 3230656 tccagcccaacggccgcaag 3230637
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      catcgccaaggtcttcaccg 97
               ||||||||||||||||||||
Sbjct: 2460653 catcgccaaggtcttcaccg 2460672
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>dbj|AK153664.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630036G21 product:GTPase activating
            RANGAP domain-like 1, full insert sequence
          Length = 1745

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1056 cttgccttatattttcccaa 1075
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      tcttcaccgtctgcttcatg 108
               ||||||||||||||||||||
Sbjct: 5880242 tcttcaccgtctgcttcatg 5880223
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>dbj|AK046680.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430308D21 product:hypothetical
            protein, full insert sequence
          Length = 3424

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1145 cttgccttatattttcccaa 1164
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>dbj|AK042116.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630059L24 product:CDNA FLJ12926 FIS,
            CLONE NT2RP2004732, WEAKLY SIMILAR TO NEUROFILAMENT
            TRIPLET M PROTEIN homolog [Homo sapiens], full insert
            sequence
          Length = 3584

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1059 cttgccttatattttcccaa 1078
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>dbj|AK082010.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130094C19 product:unclassifiable, full
            insert sequence
          Length = 3940

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1691 cttgccttatattttcccaa 1710
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 3       ggcgctggtgacggcggcgcagggaggc 30
               |||||||| ||||||||||| |||||||
Sbjct: 4037838 ggcgctggcgacggcggcgctgggaggc 4037865
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>ref|XM_578542.1| PREDICTED: Rattus norvegicus GTPase activating RANGAP domain-like 1
            (Garnl1), mRNA
          Length = 7791

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1512 cttgccttatattttcccaa 1531
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>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence
          Length = 243870

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    acattggaaatatacctctg 402
              ||||||||||||||||||||
Sbjct: 130910 acattggaaatatacctctg 130929
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>dbj|AK129236.1| Mus musculus mRNA for mKIAA0884 protein
          Length = 3472

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 cttgccttatattttcccaa 216
           ||||||||||||||||||||
Sbjct: 947 cttgccttatattttcccaa 966
to top
>emb|AL356596.3|CNS05TDF Human chromosome 14 DNA sequence BAC R-354G16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179318

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   tctggatccttgattggctt 311
             ||||||||||||||||||||
Sbjct: 90522 tctggatccttgattggctt 90541
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>gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome 13, complete sequence
          Length = 219890

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 229    atcactctcgagaagttggtgcag 252
              |||||||||||||| |||||||||
Sbjct: 102755 atcactctcgagaacttggtgcag 102778
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>ref|NM_019994.4| Mus musculus GTPase activating RANGAP domain-like 1 (Garnl1),
            transcript variant 2, mRNA
          Length = 7922

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1144 cttgccttatattttcccaa 1163
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>ref|NM_001003719.1| Mus musculus GTPase activating RANGAP domain-like 1 (Garnl1),
            transcript variant 3, mRNA
          Length = 7891

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  cttgccttatattttcccaa 216
            ||||||||||||||||||||
Sbjct: 1144 cttgccttatattttcccaa 1163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,522,578
Number of Sequences: 3902068
Number of extensions: 3522578
Number of successful extensions: 63145
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62896
Number of HSP's gapped (non-prelim): 243
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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