>MSI4_ARATH (O22607) WD-40 repeat protein MSI4 (Altered cold-responsive gene 1|
           protein)
          Length = 507

 Score =  121 bits (304), Expect = 4e-28
 Identities = 58/59 (98%), Positives = 58/59 (98%)
 Frame = +3

Query: 3   WGPQFEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF 179
           WGPQ EQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF
Sbjct: 96  WGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF 154

>MSI5_ARATH (Q9SU78) WD-40 repeat protein MSI5|
          Length = 487

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 38/59 (64%), Positives = 40/59 (67%)
 Frame = +3

Query: 3   WGPQFEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF 179
           WGPQ EQA  K  QRLYLSEQT+GSVPNTLVIANCE V           Q NE+A SPF
Sbjct: 86  WGPQLEQAGSKT-QRLYLSEQTNGSVPNTLVIANCETVN---------RQLNEKAHSPF 134

>RENT1_FUGRU (Q98TR3) Putative regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1)
          Length = 1097

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 175 GDRASSLNCDMCSAAATRGLTTSQFAMTRVLGTLP 71
           G+  +S +C MC  AA  GL+ S F    VLG  P
Sbjct: 642 GEITASWSCVMCKKAAKAGLSQSLFERLVVLGIRP 676

>YIS5_SHISO (P16943) Insertion element IS630 hypothetical 39 kDa protein|
           (ISO-IS200 39 kDa protein)
          Length = 343

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 178 KGDRASSLNCDMCSAAATRGLTTSQFAMTRVLGTLPSVCSDR*RRWRF 35
           +GDR S +   +C A ++ G   + F  + V G L S+ + R RRW F
Sbjct: 39  RGDRVSDVARTLCCARSSVGRWINWFTQSGVEG-LKSLPAGRARRWPF 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,017,463
Number of Sequences: 219361
Number of extensions: 404370
Number of successful extensions: 1240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)