>CRUM2_MOUSE (Q80YA8) Crumbs homolog 2 (Crumbs-like protein 2) (Fragment)|
          Length = 1248

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 28  PLASTLLPTTRSGARASPLCAPPSIYPPLC 117
           PLA+T +PT +SG        PP  Y P C
Sbjct: 376 PLAATCIPTFKSGLHGYFCRCPPGTYGPFC 405

>MRE11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (Recombinational|
           repair protein mus-23)
          Length = 760

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 7   PPXHASRPLASTLLPTTRSGARASPLCAPPS 99
           PP    +P A++ + +TR+ ARA+P+ A P+
Sbjct: 707 PPAPPPKPKATSRVASTRASARATPVRATPA 737

>USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)|
          Length = 1191

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 3   ASTASRLSPPRLH----AAPNHPLRRSRFSPLRAAKYIPPPL 116
           A+ AS  + P  H    A P HP+     S +RAA +IP PL
Sbjct: 428 AAAASLQATPHSHPPFLALPTHPIIIVPCSLIRAASFIPGPL 469

>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 55  TRSGARASPLCAPPSIYPP 111
           +R GARASP   PP + PP
Sbjct: 51  SRGGARASPATQPPPLLPP 69

>PACC_ASPNG (Q00203) pH-response transcription factor pacC/RIM101|
          Length = 667

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 1   RLPPXHASRPLASTLL--PTTRSGARASPLCAPPS 99
           +LPP HA+   +++++  P T S +  +P   PPS
Sbjct: 385 QLPPSHATATSSASMMPNPATHSPSTGTPALTPPS 419

>NOS_ORYSA (Q6YPG5) Putative nitric-oxide synthase (EC 1.14.13.39)|
          Length = 547

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +3

Query: 21  LSPPRLHAAPNHPLRRSRFSPLRAAKYIPPP 113
           LS P+   APN     S FSP RAA   PPP
Sbjct: 18  LSLPKPQLAPNP----SSFSPTRAASTAPPP 44

>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 58  RSGARASPLCAPPSIYPP 111
           R GARASP   PP + PP
Sbjct: 52  RGGARASPATQPPPLLPP 69

>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 58  RSGARASPLCAPPSIYPP 111
           R GARASP   PP + PP
Sbjct: 52  RGGARASPATQPPPLLPP 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,066,746
Number of Sequences: 219361
Number of extensions: 216802
Number of successful extensions: 1233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)