ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40p04 |
|---|---|
| Clone Library Name | barley_pub |
>MYBPH_MOUSE (P70402) Myosin-binding protein H (MyBP-H) (H-protein)| Length = 483 Score = 33.9 bits (76), Expect = 0.24 Identities = 23/88 (26%), Positives = 34/88 (38%) Frame = +1 Query: 211 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 390 P ++ + AS Q+ P+P + QDP A S + A KP EP Sbjct: 21 PAKVPTTEPSGEVAASESTGQEQAPEPQKPQAQDPAAPAASAMPAATKP--EPPSEDVPS 78 Query: 391 DPLAHLKSALDEAMKSIHEPVPESLAKL 474 PL + + ++ PE L KL Sbjct: 79 APLRLTLEDVSHSSLTVSWEPPEKLGKL 106
>IFEB_HELPO (P16275) Non-neuronal cytoplasmic intermediate filament protein B| (IFB) Length = 450 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +1 Query: 220 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 390 ++ QVK A+ + NR+ +P+RD ++ LAQ + VIDE + K +SE + + Sbjct: 92 LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 150 Query: 391 DPLAHLKSAL 420 D +A L+ + Sbjct: 151 DEIASLRELI 160
>IFEA_HELAS (P22488) Non-neuronal cytoplasmic intermediate filament protein| (IF) Length = 575 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +1 Query: 220 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 390 ++ QVK A+ + NR+ +P+RD ++ LAQ + VIDE + K +SE + + Sbjct: 93 LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 151 Query: 391 DPLAHLKSAL 420 D +A L+ + Sbjct: 152 DEIASLRELI 161
>HISX_DEIRA (Q9RSI4) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 436 Score = 32.3 bits (72), Expect = 0.70 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Frame = +1 Query: 304 TQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLK----SALDEAMKSIHEPVPESLAK 471 +++ L +++ ++E L+ + EP RS AR+ A +K +LDEA+ + PE L Sbjct: 279 SRELLLAVQAELNEQLENLPEPNRSWARDSVGARMKVVLADSLDEALDLANLYAPEHLCL 338 Query: 472 LSRE 483 L+R+ Sbjct: 339 LTRD 342
>SYP_METTH (O26708) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 482 Score = 32.3 bits (72), Expect = 0.70 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Frame = +1 Query: 211 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 390 PLR+ + ++ A+ I+R+D+ K D L I+ + E +K I E LR+ A E Sbjct: 351 PLRVEIGPRDLEKGAAVISRRDTGEKVTAD-----LQGIEETLRELMKDILENLRTRAWE 405 Query: 391 DPLAHLKSA--LDEAMKSIHE 447 + ++ A L+EA + + E Sbjct: 406 RMESEIREAETLEEASRIVDE 426
>Y1618_THETN (Q8R9J2) UPF0078 membrane protein TTE1618| Length = 198 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = -3 Query: 267 VNVRCISMAILYLNIN---PERVQFLMDSCIMQVLVIVQH-DNIPILISVSENEVSIRAK 100 V++ ++ AI + +N P VQ L + ++ +LVI QH NI LI+ +E+++ RA+ Sbjct: 137 VSLGSMTGAITFALLNIFFPNSVQVLTFAIVLALLVIFQHRSNIKRLINGTESKIGQRAQ 196 Query: 99 LK 94 +K Sbjct: 197 IK 198
>REPS2_HUMAN (Q8NFH8) RalBP1-associated Eps domain-containing protein 2| (RalBP1-interacting protein 2) (Partner of RalBP1) Length = 660 Score = 30.4 bits (67), Expect = 2.7 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%) Frame = +1 Query: 211 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEAL-KPISE----PLR 375 P +N K S D + + P P +D T D +KS I+EAL K +SE P Sbjct: 396 PRDLNRMEKTSVKDMADL------PVPNQDVTSDDKQALKSTINEALPKDVSEDPATPKD 449 Query: 376 ST---AREDPLAHLKSALDEAMKSIHEP 450 S AR ++ ++++EAMK +P Sbjct: 450 SNSLKARPRSRSYSSTSIEEAMKRGEDP 477
>MYBPH_RAT (O88599) Myosin-binding protein H (MyBP-H) (H-protein)| Length = 484 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = +1 Query: 250 DASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLKSALDEA 429 +AS + + P+P + T +P Q+ + + EP + +DP AH A Sbjct: 8 EASVSTSEGTAPEPAKVPTPEPSGQVAASESTGQEQAPEPQKQPQAQDPAAHEAPATPAT 67 Query: 430 MK--SIHEPVPESLAKLSRE 483 K + E VP + +L+ E Sbjct: 68 TKPEAPSEDVPSAPLQLTLE 87
>TCPD_CAEEL (P47208) T-complex protein 1 subunit delta (TCP-1-delta)| (CCT-delta) Length = 540 Score = 29.6 bits (65), Expect = 4.5 Identities = 17/65 (26%), Positives = 33/65 (50%) Frame = +1 Query: 205 LNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTA 384 L+P+ +++N+HA+ + + R V D ++ + Q V A+K SE +RS Sbjct: 471 LSPIHTVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSIL 530 Query: 385 REDPL 399 + D + Sbjct: 531 KIDDI 535
>YOX1_YEAST (P34161) Homeobox protein YOX1| Length = 385 Score = 29.6 bits (65), Expect = 4.5 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Frame = +1 Query: 196 HQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVID----EALKPIS 363 H LN +K S A H+N Q PV+ + + ++ + ID +A +P+S Sbjct: 294 HHSLNRRSSTPSIKRSQALTFHLNPQKKTLTPVKTSPNSRVNKLINSIDHSPSKAKRPVS 353 Query: 364 EPLRSTARE 390 P S R+ Sbjct: 354 NPSGSPKRK 362
>FTSK_PSEAE (Q9I0M3) DNA translocase ftsK| Length = 811 Score = 29.3 bits (64), Expect = 5.9 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Frame = +1 Query: 232 VKNSHADASHINRQDSRPKPVRDTTQDPLA--QIKSVIDEALKPISEPLRSTAREDPLAH 405 ++ A A H++ ++ RP P D P A K V+ E P+ TA E L Sbjct: 261 LEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPL---FVDTAVEGTLPP 317 Query: 406 LKSALDEAMKSIHEPVPESLAKLSR 480 L S LD A PESL +SR Sbjct: 318 L-SLLDPAEVKQKSYSPESLEAMSR 341
>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1714 Score = 28.9 bits (63), Expect = 7.7 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = +1 Query: 211 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 390 PLR+ V K+ A R+D+ K PLA ++ I L+ I E + + A+E Sbjct: 1564 PLRLEVGPKDLKAQQLVAVRRDTVEK-----ITIPLADVEKKIPALLETIHESMLNKAQE 1618 Query: 391 DPLAHLK 411 D +H K Sbjct: 1619 DMTSHTK 1625
>YQBD_BACSU (P45920) Hypothetical protein yqbD| Length = 322 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/81 (20%), Positives = 40/81 (49%) Frame = +1 Query: 229 QVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHL 408 ++KN+HA ++ Q + + T + ++ I EAL+PI + L + +E+ L Sbjct: 206 EIKNAHAALGNLLSQVETKEGEEEMTSE---EVTKSIQEALEPIKKRLETLEKEEELNKK 262 Query: 409 KSALDEAMKSIHEPVPESLAK 471 +E + E + +++++ Sbjct: 263 DKEKEEETEKEGEKLKKAISE 283
>SLIK5_HUMAN (O94991) SLIT and NTRK-like protein 5 precursor (Leucine-rich| repeat-containing protein 11) Length = 958 Score = 28.9 bits (63), Expect = 7.7 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Frame = +1 Query: 229 QVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTA-------- 384 ++K +++ H+ +Q P P + Q P Q++ E + S LRS A Sbjct: 781 ELKVTYSSNHHLQQQQQPPPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPAYSVSTIEP 840 Query: 385 REDPLAHLKSALDEAMKSIHEP 450 RED L+ ++ A D + I EP Sbjct: 841 REDLLSPVQDA-DRFYRGILEP 861 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.131 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,234,437 Number of Sequences: 219361 Number of extensions: 959482 Number of successful extensions: 3682 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3681 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
