>ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain Iswi (EC|
           3.6.1.-) (Protein imitation swi) (Nucleosome remodeling
           factor 140 kDa subunit) (NURF-140) (CHRAC 140 kDa
           subunit)
          Length = 1027

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 34/157 (21%), Positives = 63/157 (40%)
 Frame = +2

Query: 17  QKSIRISGLISKGDQSSRQLSKEKKQREIDEGITIDKLHRLNQKNVSAWNMKRLMKIVRF 196
           +K +R+  LI++     + + + + +  +D+ +   +  RL     +  N   ++ I+RF
Sbjct: 547 KKQVRVFRLITESTVEEKIVERAEVKLRLDKMVI--QGGRLVDNRSNQLNKDEMLNIIRF 604

Query: 197 GTLTTMDEQIQQATGEGDESATQIRSEYEAQVAAKKIFHNVAKPGSKYIYLADMMRFMRQ 376
           G       +    T   DE    I    EA+ A +K   +     S   +  D       
Sbjct: 605 GANQVFSSKETDIT---DEDIDVILERGEAKTAEQKAALDSLGESSLRTFTMDT----NG 657

Query: 377 EEAIKAMHLFEGAQEHCRVSRRSLKNWVVNAFRERKA 487
           E    +++ FEG     +    +L NW+    RERKA
Sbjct: 658 EAGTSSVYQFEGEDWREKQKLNALGNWIEPPKRERKA 694

>THYG_HUMAN (P01266) Thyroglobulin precursor|
          Length = 2768

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 184  DCSFWDAHHNGRADSAGNGRGGRVSDTDSQRI*GAGGRQEDL 309
            DCSFW  + +    SA   +GG+ ++++ + +    G +EDL
Sbjct: 2714 DCSFWSKYISSLKTSADGAKGGQSAESEEEELTAGSGLREDL 2755

>TCR_STAES (P62967) Tetracycline resistance protein|
          Length = 459

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 446 LKNWVVNAFRERKALALTLNDTKTAVNKLNQMCNI----VVGLIVSALWLLILGIATTHF 613
           + NWV  A+       LT +       KL+   NI    ++G+ +S L  LI  I   HF
Sbjct: 50  ITNWVNTAYM------LTFSIGTAVYGKLSDYINIKKLLIIGISLSCLGSLIAFIGHNHF 103

Query: 614 FVFISSQLLVAV 649
           F+ I  +L+  V
Sbjct: 104 FILIFGRLVQGV 115

>TCR_STAAU (P02983) Tetracycline resistance protein (Tetracycline efflux|
           protein)
          Length = 459

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 446 LKNWVVNAFRERKALALTLNDTKTAVNKLNQMCNI----VVGLIVSALWLLILGIATTHF 613
           + NWV  A+       LT +       KL+   NI    ++G+ +S L  LI  I   HF
Sbjct: 50  ITNWVNTAYM------LTFSIGTAVYGKLSDYINIKKLLIIGISLSCLGSLIAFIGHNHF 103

Query: 614 FVFISSQLLVAV 649
           F+ I  +L+  V
Sbjct: 104 FILIFGRLVQGV 115

>PCNT_MOUSE (P48725) Pericentrin|
          Length = 1920

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 4/198 (2%)
 Frame = +2

Query: 32   ISGLISKGDQSSRQLSKEKKQREIDEGITIDKLHRLNQKNVSAWN-MKRLMKIVRFGTLT 208
            +  LI    ++ RQL K+K +        I++LH + +K  S  + M   +  V      
Sbjct: 1440 LKSLIENLQENQRQLQKDKAEE-------IEQLHEVIEKLQSELSLMGPKVHEVSDPQAG 1492

Query: 209  TMDEQIQQATGEGDESATQIRSEYEAQVAAKKIFHNVA--KPGSKYIYLADMMRFMRQEE 382
            ++  ++    GEG      +RSE +A  AAK++F  +   +       L  + + ++  E
Sbjct: 1493 SLHSELACLRGEG-LGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQGLQDAE 1551

Query: 383  AIKAMHLFEGAQEHCRVSRRSLKNWVVNAFRERKALALTLNDTKTAVNKLNQMCNIVVGL 562
             + A HL E   EHC   R +    + +  +E    A TL   +  + + +   + V   
Sbjct: 1552 EVAARHLAE--LEHCVALREAEVEAMASQIQE---FAATLKAKEAIIEQRDLEIDAVNKW 1606

Query: 563  IVS-ALWLLILGIATTHF 613
             VS +L L  + +A  HF
Sbjct: 1607 KVSHSLELEAILLALAHF 1624

>Y3528_METJA (Q60287) Hypothetical protein MJECL28|
          Length = 1272

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 691  NCLKNCLHSIPEHKNCHKKL*TDEDKEMCRRYAQNKKPESRHYEANNNIAHLVE 530
            N +K CL  I E+K   K++  +ED++  + Y  + K    H +  + +A ++E
Sbjct: 1022 NTIKKCLEEINEYKKIVKEINENEDRKTKKIYHIDLKLLEEHKDKLSTLARIIE 1075

>GRR1_YEAST (P24814) Ubiquitin ligase complex F-box protein GRR1|
          Length = 1151

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
 Frame = +2

Query: 83  EKKQREIDEGITIDKLH----RLNQKNVSAWNMKRLMKIVRFGTLTTMDEQIQQATGEGD 250
           EK++++I   I +D L     R++    +   + +L ++ R   L T + +I+    +  
Sbjct: 174 EKRRKKILNEIELDNLKLKELRIDNSPQAISYLHKLQRM-RLRALETENMEIRNLRLKIL 232

Query: 251 ESATQIRSEYEAQVAAKKIFHNVAKPGSKYIYLADMMRFMRQEEAIKAMHLFEGAQEHCR 430
               + +    A   +K     V  P   +I       ++   +  ++  L EG Q+  R
Sbjct: 233 TIIEEYKKSLYAYCHSKLRGQQVENPTDNFII------WINSIDTTESSDLKEGLQDLSR 286

Query: 431 VSRRSLKNWVVNAFRERKALALTLNDTKTAVN------------KLNQMCNIVVGLIVSA 574
            SR+ + N + N   +    ++T      A+N            KLNQ  +IV  L VS 
Sbjct: 287 YSRQFINNVLSNPSNQNICTSVTRRSPVFALNMLPSEILHLILDKLNQKYDIVKFLTVSK 346

Query: 575 LWLLIL 592
           LW  I+
Sbjct: 347 LWAEII 352

>FSHB_SHEEP (P01227) Follitropin beta chain precursor (Follicle-stimulating|
           hormone beta subunit) (FSH-beta) (FSH-B)
          Length = 129

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 550 NIAHLVELVNCSFCIIKC*GKSFALSKCIHHPVLQRPPADPTV-LLCPFKKMHSFDGFLL 374
           NI   VE   CSFCI      ++    C    ++ + PA P +   C FK++  ++   +
Sbjct: 25  NITITVEKEECSFCI--SINTTWCAGYCYTRDLVYKDPARPNIQKACTFKEL-VYETVKV 81

Query: 373 PHEAHHVCQVY 341
           P  AHH   +Y
Sbjct: 82  PGCAHHADSLY 92

>HS90B_CHICK (Q04619) Heat shock cognate protein HSP 90-beta|
          Length = 725

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = +2

Query: 164 NMKRLMKIVRFGT------LTTMDEQIQQATGEGDESATQIRSEYEAQVAAKKIFHNVAK 325
           N KRL +++R+ T      +T++ E + +   E  +S   I  E + QVA       V K
Sbjct: 448 NRKRLSELLRYHTSQSGDEMTSLSEYVSRMK-ESQKSIYYITGESKEQVANSAFVERVRK 506

Query: 326 PGSKYIYLADMMRFMRQEEAIKAMHLFEG 412
            G + +Y+ + +     E  ++ +  F+G
Sbjct: 507 RGFEVVYMTEPI----DEYCVQQLKEFDG 531

>YG22_YEAST (P53235) Hypothetical 71.3 kDa protein in SCM4-MUP1 intergenic|
           region
          Length = 642

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 141 LSLWSLS--MVIPSSISRCFFSFDSCLLDWSPL 49
           L +W+LS   +     S+ FF  DSC L W+PL
Sbjct: 211 LIIWALSEGKITKKIASKTFFKADSCQLKWNPL 243

>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 69  GSCQRRRNSVRLMKGSPLTSSTGS-IRKTSRHGT*RG**RLFVLGRSPQWTSRFSRQRER 245
           G C+R +++  + + SP    + S IR+ SR    R         RSP+  SR  R+R+R
Sbjct: 422 GRCERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRS--------RSPRRRSRSPRRRDR 473

Query: 246 GTSQRHRFAANMRRRWPPRR 305
               + R     R R   RR
Sbjct: 474 SRRSKSRLRRRSRSRGGHRR 493

>OTC_SHEEP (P84010) Ornithine carbamoyltransferase, mitochondrial (EC 2.1.3.3)|
           (OTCase) (Ornithine transcarbamylase)
          Length = 320

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = +2

Query: 176 LMKIVRFGTLTTMDEQIQQATGEG---DESATQIRSEYEAQVAAKKIFHN---VAKPGSK 337
           +M   +FG        +Q AT +G   D S T++  +Y  +   K +  N    A  G  
Sbjct: 171 MMSAAKFGM------HLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGN 224

Query: 338 YIYLADMMRFMRQEEAIKAMHLFEGAQEHCRVSRRSLKNW 457
            +     +   R+EE  K +  F+G Q + + ++ +   W
Sbjct: 225 VLITDTWISMGREEEKKKRLQAFQGYQVNSKTAKVAASAW 264

>FLIP1_MOUSE (Q9CS72) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1211

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 20/81 (24%), Positives = 42/81 (51%)
 Frame = +2

Query: 41  LISKGDQSSRQLSKEKKQREIDEGITIDKLHRLNQKNVSAWNMKRLMKIVRFGTLTTMDE 220
           ++ K  Q  R++    K  ++++G  +D   +L +++      K+L+K+      + M+E
Sbjct: 515 MMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEES------KKLLKLK-----SEMEE 563

Query: 221 QIQQATGEGDESATQIRSEYE 283
           ++   T E DE   ++RSE E
Sbjct: 564 KVYSLTKERDELMGKLRSEEE 584

>SYS_PYRKO (Q5JE75) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 455

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = +2

Query: 20  KSIRISGLISKGDQSSRQLSKEKKQREIDEGITIDKLHRLNQKNVSAWNMKRLMKIVRFG 199
           K IR +  I K D   R   + +K + IDE + +DK  R N K ++    +R    V+ G
Sbjct: 5   KLIRENPEIVKRDLIKR--GETEKLKWIDEILELDKKWRENLKKINQLRKERNQLAVQIG 62

Query: 200 TLTTMDEQIQQATGEGDESATQIRS-EYEAQVAAKKI 307
                 E I       +E   QI   E E +   KKI
Sbjct: 63  KRKKAGEPIDDLLKRSNEIVKQIEELEKENEELKKKI 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,278,184
Number of Sequences: 219361
Number of extensions: 2189908
Number of successful extensions: 7322
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7316
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)