ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EPN2_HUMAN (O95208) Epsin-2 (EPS-15-interacting protein 2) 30 4.6
2POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyser... 30 4.6
3RASA2_RAT (Q63713) Ras GTPase-activating protein 2 (GAP1m) 30 6.0
4ACHA_HUMAN (P02708) Acetylcholine receptor protein, alpha subuni... 30 6.0
5SQHC_ALIAC (P33247) Squalene--hopene cyclase (EC 5.4.99.17) 30 7.9
6POLS2_MOUSE (Q5K2P8) Polyserase-2 precursor (EC 3.4.21.-) (Polys... 30 7.9

>EPN2_HUMAN (O95208) Epsin-2 (EPS-15-interacting protein 2)|
          Length = 642

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 207 TRSNGTSRPDPVISMPWTAAAAECYVTPPTPLDVLNPH 94
           +++NGT+ PDP  S P T A+++      TP   L P+
Sbjct: 480 SQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPN 517



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>POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2)
          Length = 875

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 240 HPGHRSWYTFLTRSNGTSRPDPVISMPWTAAAAECYVTPPT--PLDVLN 100
           HPG   W   L +  G      +I+  W  +AA C+VT  T  P D L+
Sbjct: 58  HPGTWPWQVSLHQGGGHICGGSLIAPSWVLSAAHCFVTNGTLEPADELS 106



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>RASA2_RAT (Q63713) Ras GTPase-activating protein 2 (GAP1m)|
          Length = 847

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 231 HRSWYTFLTRSNG--TSRPDPVISMPWTAAAAECYVTP 124
           H++WY    R NG  +S+PD + S+  T    E YV P
Sbjct: 284 HQAWYLLQPRDNGNKSSKPDDLGSLLLTLCYTEDYVLP 321



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>ACHA_HUMAN (P02708) Acetylcholine receptor protein, alpha subunit precursor|
          Length = 482

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 352 VKQSIVWHHTGTQACDPNVEELRVGYPVVGLRLPL 248
           +K+S  W H+ T +C P+   L + Y  V  RLPL
Sbjct: 223 IKESRGWKHSVTYSCCPDTPYLDITYHFVMQRLPL 257



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>SQHC_ALIAC (P33247) Squalene--hopene cyclase (EC 5.4.99.17)|
          Length = 630

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +2

Query: 404 LPESGGRRDVITFGFATLVQ*CNPVAFN*HNQEILIWDFRTLGDAPKHVPFCIYFMVS-- 577
           LP+   RRD +T GF  +V           N     +D     D P H+PFC +  V+  
Sbjct: 389 LPDERRRRDAMTKGFRWIV------GMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDP 442

Query: 578 -SEALSAVCLQ 607
            SE ++A  L+
Sbjct: 443 PSEDVTAHVLE 453



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>POLS2_MOUSE (Q5K2P8) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2) (Protease serine 36)
          Length = 849

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
 Frame = -2

Query: 240 HPGHRSWYTFLTRSNGTSRPDPVISMPWTAAAAECYVTPPT--PLD----VLNPHQDD 85
           HPG   W   L    G      +I+  W  +AA C+VT  T  P D    +L  H  D
Sbjct: 54  HPGTWPWQVSLHHGGGHICGGSLIAPSWVLSAAHCFVTNGTLEPADEWSVLLGVHSQD 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,360,509
Number of Sequences: 219361
Number of extensions: 2121701
Number of successful extensions: 5616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5611
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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