ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40o17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596598.1| Saccharum officinarum clone SCCCCL3001E12, complete sequence Length = 1052 Score = 500 bits (252), Expect = e-138 Identities = 515/600 (85%), Gaps = 7/600 (1%) Strand = Plus / Plus Query: 2 gaacccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcct 61 ||||||||||||||| ||||||||| |||| ||||| ||| ||||||||||||||||||| Sbjct: 137 gaacccgcagctgtttgggaacgggttgccggtgccgttctacggcgagatgttcgtcct 196 Query: 62 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcggcgcccggcggtcacgc 121 ||| || |||||||||||||||||||||||||||||||| || || || |||||||| | Sbjct: 197 cgcgcgggacggcgtcgagttccacgtcgacaagatcccgtcagctcctggcggtcaagt 256 Query: 122 aaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgccgccaagcc 181 |||||||| ||||| || ||||| ||||| ||||||||||||||||| ||| |||||| Sbjct: 257 gaaaacaaaaggcacgatttacctgtctaatataaggatggtgtttgttgccaacaagcc 316 Query: 182 tattgggaatttctttgccttcgatatgcctctgttgtacgtgcacggtgagaagttcaa 241 | |||| || |||||||| || |||||||| ||||||| ||||| |||||||||||||| Sbjct: 317 tgttggcaacttctttgcttttgatatgccactgttgtttgtgcatggtgagaagttcaa 376 Query: 242 ccagccgatatttcactgcaacaatatctctggatttgttgagccggttgttccagaaag 301 ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| | Sbjct: 377 tcagcccatatttcactgcaacaacatctctggatttgttgaaccagttgttccagacaa 436 Query: 302 ccagaacagggctttgtactccacccacaccttcaagatcttgttcaaggaaggtggatg 361 ||||||||||| ||||||| || |||||||||||||||||||||||||| || || || Sbjct: 437 tcagaacagggccctgtactcaactcacaccttcaagatcttgttcaaggacggaggctg 496 Query: 362 tggcacctttgtgccactcttcctgaacctgatcacgtcagtgcggcgccacaatcagtt 421 ||| || ||||| || ||||||||||||||| | | || ||||||||| |||| ||||| Sbjct: 497 tggtacttttgttcctctcttcctgaacctggttgcttctgtgcggcgctacaaccagtt 556 Query: 422 tgaagcccag---cctgctaccgtg---ccccgtgtggaccccatgcaggcagcgcaaac 475 |||||||||| |||||| | || || |||||||||||| |||| || ||||| || Sbjct: 557 tgaagcccagtctgctgctaacatggcaccgcgtgtggaccccctgcaagctgcgcagac 616 Query: 476 -cctgttgacgacatgatgcgccatgcgtatgtcgatccacatgatcctaccaagatctt 534 |||||||| ||||||||||| ||||||||||| || ||| |||||||||||||||| || Sbjct: 617 tcctgttgatgacatgatgcgtcatgcgtatgttgacccaaatgatcctaccaagatttt 676 Query: 535 cctccagcagcctgcagcagaatcccagcttaggaggagaaactaccacggccccgctga 594 ||| ||||| ||||| ||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 677 ccttcagcaacctgcgccagaatcgcagctgaggaggagaaactaccacggcccagctga 736
>dbj|AK104595.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D09, full insert sequence Length = 983 Score = 442 bits (223), Expect = e-121 Identities = 382/435 (87%) Strand = Plus / Plus Query: 2 gaacccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcct 61 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 75 gaacccgcagctgttcgggaacgggatgctggtgcccttctacggcgagatgttcgtcct 134 Query: 62 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcggcgcccggcggtcacgc 121 |||||||||||||||||||||||||||||||||||||||||| || || || ||||| || Sbjct: 135 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcagctcctggtggtcatgc 194 Query: 122 aaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgccgccaagcc 181 |||||||||||||| || ||||| || |||||||||||||| ||||||||| |||||| Sbjct: 195 gaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgccagcaagcc 254 Query: 182 tattgggaatttctttgccttcgatatgcctctgttgtacgtgcacggtgagaagttcaa 241 | ||||||| |||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 255 tgttgggaacttctttgcttttgatatgcccctgttgtatgtgcatggtgagaaattcaa 314 Query: 242 ccagccgatatttcactgcaacaatatctctggatttgttgagccggttgttccagaaag 301 ||||| ||||||||||||||||| || || || || |||||||||||||| ||||| | Sbjct: 315 tcagccaatatttcactgcaacaacatatcgggtttcgttgagccggttgtaccagagaa 374 Query: 302 ccagaacagggctttgtactccacccacaccttcaagatcttgttcaaggaaggtggatg 361 |||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||| || Sbjct: 375 ccagaacagggccctgtactcgacccacactttcaagatcttgttcaaggagggtggctg 434 Query: 362 tggcacctttgtgccactcttcctgaacctgatcacgtcagtgcggcgccacaatcagtt 421 ||| |||||||| || |||||||| |||||| | | || ||||| ||| |||||||||| Sbjct: 435 tggtacctttgttcctctcttcctaaacctggttgcatctgtgcgacgctacaatcagtt 494 Query: 422 tgaagcccagcctgc 436 ||| |||||| |||| Sbjct: 495 tgaggcccagtctgc 509 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 476 cctgttgacgacatgatgcgccatgcgtatgtcgatccacatgatcctaccaagatcttc 535 |||||||| || |||||||| ||||||||||| ||||| | |||||||| ||||| ||| Sbjct: 556 cctgttgatgatatgatgcgtcatgcgtatgttgatccgaacgatcctacaaagattttc 615 Query: 536 ctccagcagcctgcagcagaatcccagcttaggaggagaaactaccacgg 585 || ||||||||||| |||| || ||||| |||||||||||||||||||| Sbjct: 616 cttcagcagcctgcgccagagtcacagctgaggaggagaaactaccacgg 665
>dbj|AK061814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B04, full insert sequence Length = 989 Score = 442 bits (223), Expect = e-121 Identities = 382/435 (87%) Strand = Plus / Plus Query: 2 gaacccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcct 61 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 115 gaacccgcagctgttcgggaacgggatgctggtgcccttctacggcgagatgttcgtcct 174 Query: 62 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcggcgcccggcggtcacgc 121 |||||||||||||||||||||||||||||||||||||||||| || || || ||||| || Sbjct: 175 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcagctcctggtggtcatgc 234 Query: 122 aaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgccgccaagcc 181 |||||||||||||| || ||||| || |||||||||||||| ||||||||| |||||| Sbjct: 235 gaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgccagcaagcc 294 Query: 182 tattgggaatttctttgccttcgatatgcctctgttgtacgtgcacggtgagaagttcaa 241 | ||||||| |||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 295 tgttgggaacttctttgcttttgatatgcccctgttgtatgtgcatggtgagaaattcaa 354 Query: 242 ccagccgatatttcactgcaacaatatctctggatttgttgagccggttgttccagaaag 301 ||||| ||||||||||||||||| || || || || |||||||||||||| ||||| | Sbjct: 355 tcagccaatatttcactgcaacaacatatcgggtttcgttgagccggttgtaccagagaa 414 Query: 302 ccagaacagggctttgtactccacccacaccttcaagatcttgttcaaggaaggtggatg 361 |||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||| || Sbjct: 415 ccagaacagggccctgtactcgacccacactttcaagatcttgttcaaggagggtggctg 474 Query: 362 tggcacctttgtgccactcttcctgaacctgatcacgtcagtgcggcgccacaatcagtt 421 ||| |||||||| || |||||||| |||||| | | || ||||| ||| |||||||||| Sbjct: 475 tggtacctttgttcctctcttcctaaacctggttgcatctgtgcgacgctacaatcagtt 534 Query: 422 tgaagcccagcctgc 436 ||| |||||| |||| Sbjct: 535 tgaggcccagtctgc 549 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 476 cctgttgacgacatgatgcgccatgcgtatgtcgatccacatgatcctaccaagatcttc 535 |||||||| || |||||||| ||||||||||| ||||| | |||||||| ||||| ||| Sbjct: 596 cctgttgatgatatgatgcgtcatgcgtatgttgatccgaacgatcctacaaagattttc 655 Query: 536 ctccagcagcctgcagcagaatcccagcttaggaggagaaactaccacgg 585 || ||||||||||| |||| || ||||| |||||||||||||||||||| Sbjct: 656 cttcagcagcctgcgccagagtcacagctgaggaggagaaactaccacgg 705
>gb|AY108813.1| Zea mays PCO104391 mRNA sequence Length = 907 Score = 428 bits (216), Expect = e-116 Identities = 503/596 (84%), Gaps = 7/596 (1%) Strand = Plus / Plus Query: 6 ccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcctcgcc 65 ||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||| | Sbjct: 78 ccgcagctgtttgggaacgggatgccggtgccgttctacggcgagatgttcgtcctcgtc 137 Query: 66 cgcgacggcgtcgagttccacgtcgacaagatcccctcggcgcccggcggtcacgcaaaa 125 ||||||||||||||||||||||||||||||||||| || || || || ||||| | ||| Sbjct: 138 cgcgacggcgtcgagttccacgtcgacaagatcccgtcagctcctggaggtcatgtgaaa 197 Query: 126 acaaagggcaccatatacctttctaacataaggatggtgtttgtcgccgccaagcctatt 185 ||||| ||||| || ||||| || || ||||||||||||||||| ||| ||||||| || Sbjct: 198 acaaaaggcacaatttacctgtccaatataaggatggtgtttgttgccagcaagcctgtt 257 Query: 186 gggaatttctttgccttcgatatgcctctgttgtacgtgcacggtgagaagttcaaccag 245 || || |||||||| || |||||||| ||||||| ||||| |||||||||||||| ||| Sbjct: 258 ggcaacttctttgcttttgatatgccactgttgtttgtgcatggtgagaagttcaatcag 317 Query: 246 ccgatatttcactgcaacaatatctctggatttgttgagccggttgttccagaaagccag 305 || ||||||||||||||||| ||||||||||| ||||| || || |||||||| | ||| Sbjct: 318 cccatatttcactgcaacaacatctctggattcgttgaaccagtcgttccagacaatcag 377 Query: 306 aacagggctttgtactccacccacaccttcaagatcttgttcaaggaaggtggatgtggc 365 |||||||| ||||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 378 aacagggccctgtactcaactcacaccttcaagatcttgttcaaggaaggcggctgtggt 437 Query: 366 acctttgtgccactcttcctgaacctgatcacgtcagtgcggcgccacaatcagtttgaa 425 || || || || |||||||| ||||||| | || ||||||||| ||||| |||||||| Sbjct: 438 actttcgttcctctcttccttaacctgactgcatctgtgcggcgctacaatgagtttgaa 497 Query: 426 gcccagcctg---ctaccgtg---ccccgtgtggaccccatgcaggcagcgcaaac-cct 478 |||||| ||| ||| | || || |||||||| || |||| || ||||| || ||| Sbjct: 498 gcccagtctgctgctaacatggcaccgcgtgtggatcctctgcaagccgcgcagactcct 557 Query: 479 gttgacgacatgatgcgccatgcgtatgtcgatccacatgatcctaccaagatcttcctc 538 || || || |||||||| ||||||||||| || ||| |||||||||||||||| | ||| Sbjct: 558 gtcgatgatatgatgcgtcatgcgtatgttgacccaaatgatcctaccaagatttacctt 617 Query: 539 cagcagcctgcagcagaatcccagcttaggaggagaaactaccacggccccgctga 594 ||||| ||||| ||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 618 cagcaacctgccccagaatcgcagctgaggaggagaaactaccacggcccagctga 673
>dbj|AK066925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092F14, full insert sequence Length = 1626 Score = 276 bits (139), Expect = 9e-71 Identities = 277/323 (85%) Strand = Plus / Plus Query: 114 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 173 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 925 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 984 Query: 174 gccaagcctattgggaatttctttgccttcgatatgcctctgttgtacgtgcacggtgag 233 ||||||| ||||||| |||||||| || |||||||| |||||||| ||||| |||||| Sbjct: 985 agcaagcctgttgggaacttctttgcttttgatatgcccctgttgtatgtgcatggtgag 1044 Query: 234 aagttcaaccagccgatatttcactgcaacaatatctctggatttgttgagccggttgtt 293 || ||||| ||||| ||||||||||||||||| || || || || |||||||||||||| Sbjct: 1045 aaattcaatcagccaatatttcactgcaacaacatatcgggtttcgttgagccggttgta 1104 Query: 294 ccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgttcaaggaa 353 ||||| | |||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct: 1105 ccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgttcaaggag 1164 Query: 354 ggtggatgtggcacctttgtgccactcttcctgaacctgatcacgtcagtgcggcgccac 413 ||||| ||||| |||||||| || |||||||| |||||| | | || ||||| ||| || Sbjct: 1165 ggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcgacgctac 1224 Query: 414 aatcagtttgaagcccagcctgc 436 ||||||||||| |||||| |||| Sbjct: 1225 aatcagtttgaggcccagtctgc 1247 Score = 180 bits (91), Expect = 4e-42 Identities = 100/103 (97%) Strand = Plus / Plus Query: 2 gaacccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcct 61 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 247 gaacccgcagctgttcgggaacgggatgctggtgcccttctacggcgagatgttcgtcct 306 Query: 62 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 104 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 349 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 476 cctgttgacgacatgatgcgccatgcgtatgtcgatccacatgatcctaccaagatcttc 535 |||||||| || |||||||| ||||||||||| ||||| | |||||||| ||||| ||| Sbjct: 1294 cctgttgatgatatgatgcgtcatgcgtatgttgatccgaacgatcctacaaagattttc 1353 Query: 536 ctccagcagcctgcagcagaatcccagcttaggaggagaaactaccacgg 585 || ||||||||||| |||| || ||||| |||||||||||||||||||| Sbjct: 1354 cttcagcagcctgcgccagagtcacagctgaggaggagaaactaccacgg 1403
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 180 bits (91), Expect = 4e-42 Identities = 100/103 (97%) Strand = Plus / Plus Query: 2 gaacccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcct 61 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 143978 gaacccgcagctgttcgggaacgggatgctggtgcccttctacggcgagatgttcgtcct 144037 Query: 62 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 104 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144038 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 144080 Score = 123 bits (62), Expect = 8e-25 Identities = 128/150 (85%) Strand = Plus / Plus Query: 287 ggttgttccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgtt 346 |||||| ||||| | |||||||||||| ||||||| |||||||| |||||||||||||| Sbjct: 145038 ggttgtaccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgtt 145097 Query: 347 caaggaaggtggatgtggcacctttgtgccactcttcctgaacctgatcacgtcagtgcg 406 |||||| ||||| ||||| |||||||| || |||||||| |||||| | | || ||||| Sbjct: 145098 caaggagggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcg 145157 Query: 407 gcgccacaatcagtttgaagcccagcctgc 436 ||| ||||||||||||| |||||| |||| Sbjct: 145158 acgctacaatcagtttgaggcccagtctgc 145187 Score = 91.7 bits (46), Expect = 3e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 114 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 173 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 144656 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 144715 Query: 174 gccaagcctattgggaatttctttgccttcgatatgcc 211 ||||||| ||||||| |||||||| || |||||||| Sbjct: 144716 agcaagcctgttgggaacttctttgcttttgatatgcc 144753 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 518 gatcctaccaagatcttcctccagcagcctgcagcagaatcccagcttaggaggagaaac 577 |||||||| ||||| ||||| ||||||||||| |||| || ||||| |||||||||||| Sbjct: 145363 gatcctacaaagattttccttcagcagcctgcgccagagtcacagctgaggaggagaaac 145422 Query: 578 taccacgg 585 |||||||| Sbjct: 145423 taccacgg 145430 Score = 69.9 bits (35), Expect = 1e-08 Identities = 65/75 (86%) Strand = Plus / Plus Query: 215 gttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 274 |||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || || Sbjct: 144882 gttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcggg 144941 Query: 275 atttgttgagccggt 289 || ||||||||||| Sbjct: 144942 tttcgttgagccggt 144956
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 180 bits (91), Expect = 4e-42 Identities = 100/103 (97%) Strand = Plus / Plus Query: 2 gaacccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcct 61 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 19660903 gaacccgcagctgttcgggaacgggatgctggtgcccttctacggcgagatgttcgtcct 19660962 Query: 62 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 104 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19660963 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 19661005 Score = 123 bits (62), Expect = 8e-25 Identities = 128/150 (85%) Strand = Plus / Plus Query: 287 ggttgttccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgtt 346 |||||| ||||| | |||||||||||| ||||||| |||||||| |||||||||||||| Sbjct: 19661963 ggttgtaccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgtt 19662022 Query: 347 caaggaaggtggatgtggcacctttgtgccactcttcctgaacctgatcacgtcagtgcg 406 |||||| ||||| ||||| |||||||| || |||||||| |||||| | | || ||||| Sbjct: 19662023 caaggagggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcg 19662082 Query: 407 gcgccacaatcagtttgaagcccagcctgc 436 ||| ||||||||||||| |||||| |||| Sbjct: 19662083 acgctacaatcagtttgaggcccagtctgc 19662112 Score = 91.7 bits (46), Expect = 3e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 114 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 173 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 19661581 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 19661640 Query: 174 gccaagcctattgggaatttctttgccttcgatatgcc 211 ||||||| ||||||| |||||||| || |||||||| Sbjct: 19661641 agcaagcctgttgggaacttctttgcttttgatatgcc 19661678 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 518 gatcctaccaagatcttcctccagcagcctgcagcagaatcccagcttaggaggagaaac 577 |||||||| ||||| ||||| ||||||||||| |||| || ||||| |||||||||||| Sbjct: 19662288 gatcctacaaagattttccttcagcagcctgcgccagagtcacagctgaggaggagaaac 19662347 Query: 578 taccacgg 585 |||||||| Sbjct: 19662348 taccacgg 19662355 Score = 69.9 bits (35), Expect = 1e-08 Identities = 65/75 (86%) Strand = Plus / Plus Query: 215 gttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 274 |||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || || Sbjct: 19661807 gttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcggg 19661866 Query: 275 atttgttgagccggt 289 || ||||||||||| Sbjct: 19661867 tttcgttgagccggt 19661881
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 180 bits (91), Expect = 4e-42 Identities = 100/103 (97%) Strand = Plus / Plus Query: 2 gaacccgcagctgttcgggaacgggatgcccgtgcccttccacggcgagatgttcgtcct 61 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 6589 gaacccgcagctgttcgggaacgggatgctggtgcccttctacggcgagatgttcgtcct 6648 Query: 62 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 104 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6649 cgcccgcgacggcgtcgagttccacgtcgacaagatcccctcg 6691 Score = 123 bits (62), Expect = 8e-25 Identities = 128/150 (85%) Strand = Plus / Plus Query: 287 ggttgttccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgtt 346 |||||| ||||| | |||||||||||| ||||||| |||||||| |||||||||||||| Sbjct: 7649 ggttgtaccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgtt 7708 Query: 347 caaggaaggtggatgtggcacctttgtgccactcttcctgaacctgatcacgtcagtgcg 406 |||||| ||||| ||||| |||||||| || |||||||| |||||| | | || ||||| Sbjct: 7709 caaggagggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcg 7768 Query: 407 gcgccacaatcagtttgaagcccagcctgc 436 ||| ||||||||||||| |||||| |||| Sbjct: 7769 acgctacaatcagtttgaggcccagtctgc 7798 Score = 91.7 bits (46), Expect = 3e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 114 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 173 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 7267 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 7326 Query: 174 gccaagcctattgggaatttctttgccttcgatatgcc 211 ||||||| ||||||| |||||||| || |||||||| Sbjct: 7327 agcaagcctgttgggaacttctttgcttttgatatgcc 7364 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 518 gatcctaccaagatcttcctccagcagcctgcagcagaatcccagcttaggaggagaaac 577 |||||||| ||||| ||||| ||||||||||| |||| || ||||| |||||||||||| Sbjct: 7974 gatcctacaaagattttccttcagcagcctgcgccagagtcacagctgaggaggagaaac 8033 Query: 578 taccacgg 585 |||||||| Sbjct: 8034 taccacgg 8041 Score = 69.9 bits (35), Expect = 1e-08 Identities = 65/75 (86%) Strand = Plus / Plus Query: 215 gttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 274 |||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || || Sbjct: 7493 gttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcggg 7552 Query: 275 atttgttgagccggt 289 || ||||||||||| Sbjct: 7553 tttcgttgagccggt 7567
>gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence Length = 95845 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 306 aacagggctttgtactccacccacaccttcaagatcttgttcaaggaaggtggatgtggc 365 ||||| || ||||||||||| || || |||||||| ||||||||||| ||||| ||||| Sbjct: 86291 aacagtgccttgtactccacacatacattcaagattttgttcaaggatggtggttgtggg 86350 Query: 366 acctttgtgcca 377 || || |||||| Sbjct: 86351 actttcgtgcca 86362 Score = 48.1 bits (24), Expect = 0.037 Identities = 36/40 (90%) Strand = Plus / Plus Query: 250 tatttcactgcaacaatatctctggatttgttgagccggt 289 |||| ||||||||||| |||||||||||||| || ||||| Sbjct: 85888 tattccactgcaacaacatctctggatttgtagatccggt 85927
>emb|AJ635174.2| Mangifera indica microsatellite DNA, locus mMiCIR012 Length = 645 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 228 ggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 274 |||||||| || |||||||| ||||||| ||||||||||| ||||| Sbjct: 537 ggtgagaaatttaaccagccagtatttcattgcaacaatatttctgg 583
>ref|NM_121206.2| Arabidopsis thaliana unknown protein AT5G11680 mRNA, complete cds Length = 1035 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 448 cagccaatatttcactgcaacaatat 473 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 538 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 593
>ref|XM_420281.1| PREDICTED: Gallus gallus similar to Centrin 1 (Caltractin isoform 2) (LOC422304), mRNA Length = 653 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 535 cctccagcagcctgcagcagaa 556 |||||||||||||||||||||| Sbjct: 95 cctccagcagcctgcagcagaa 74
>gb|AY117201.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds Length = 631 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 250 cagccaatatttcactgcaacaatat 275 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 340 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 395
>gb|AY063800.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds Length = 845 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 448 cagccaatatttcactgcaacaatat 473 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 538 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 593
>emb|AL163814.1|ATT22P22 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project) Length = 93205 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 39054 cagccaatatttcactgcaacaatat 39079 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 39235 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 39290
>gb|AY081610.1| Arabidopsis thaliana putative protein (At5g11680) mRNA, complete cds Length = 783 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 250 cagccaatatttcactgcaacaatat 275 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 340 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 395
>gb|AY062861.1| Arabidopsis thaliana putative protein (At5g11680; T22P22_70) mRNA, complete cds Length = 1015 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 437 cagccaatatttcactgcaacaatat 462 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 527 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 582
>emb|BX833959.1|CNS09Z62 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL86ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 972 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 381 cagccaatatttcactgcaacaatat 406 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 471 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 526
>emb|BX833543.1|CNS09Z3S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZD03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 901 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 323 cagccaatatttcactgcaacaatat 348
>gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135653 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 accttcaagatcttgttcaagg 351 |||||||||||||||||||||| Sbjct: 86011 accttcaagatcttgttcaagg 85990
>gb|AY088005.1| Arabidopsis thaliana clone 403 mRNA, complete sequence Length = 1001 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cagccgatatttcactgcaacaatat 268 ||||| |||||||||||||||||||| Sbjct: 417 cagccaatatttcactgcaacaatat 442 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccactcttcctgaa 388 ||||||||| | || ||||||||||| ||||| || ||||| || |||||| |||| Sbjct: 507 ttcaagatcctatttaaggaaggtggttgtgggacatttgttcctctcttcttgaa 562
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 tcctcgcccgcgacggcgtcg 78 ||||||||||||||||||||| Sbjct: 181491 tcctcgcccgcgacggcgtcg 181511
>gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212622 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 539 cagcagcctgcagcagaatcc 559 ||||||||||||||||||||| Sbjct: 38408 cagcagcctgcagcagaatcc 38428
>ref|XM_470501.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1859 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gccaagcctattgggaattt 193 |||||||||||||||||||| Sbjct: 1778 gccaagcctattgggaattt 1797
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gccaagcctattgggaattt 193 |||||||||||||||||||| Sbjct: 35961752 gccaagcctattgggaattt 35961733
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ttcaaggaaggtggatgtgg 364 |||||||||||||||||||| Sbjct: 1576267 ttcaaggaaggtggatgtgg 1576248
>emb|AL033524.11|HS1090E8 Human DNA sequence from clone RP5-1090E8 on chromosome 1p34.1-34.3 Contains the 5' end of a novel gene, complete sequence Length = 101728 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 ccgtgtggaccccatgcagg 465 |||||||||||||||||||| Sbjct: 99235 ccgtgtggaccccatgcagg 99254
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gccaagcctattgggaattt 193 |||||||||||||||||||| Sbjct: 23263 gccaagcctattgggaattt 23244
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cgtcctcgcccgcgacggcg 75 |||||||||||||||||||| Sbjct: 116809 cgtcctcgcccgcgacggcg 116828
>gb|AC117470.8| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190630 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 accatatacctttctaacataagg 158 ||||||||||||||| |||||||| Sbjct: 72206 accatatacctttcttacataagg 72229
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gccaagcctattgggaattt 193 |||||||||||||||||||| Sbjct: 36051826 gccaagcctattgggaattt 36051807
>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence Length = 204294 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 621 ttgggaagtgcatgtgtttt 640 |||||||||||||||||||| Sbjct: 50242 ttgggaagtgcatgtgtttt 50261
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 41 ccacggcgagatgttcgtcctcgcccgc 68 |||||||||||||| || |||||||||| Sbjct: 4793960 ccacggcgagatgtgcgccctcgcccgc 4793933 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cggcgtcgagttccacgtcg 90 |||||||||||||||||||| Sbjct: 1898569 cggcgtcgagttccacgtcg 1898588
>dbj|AK203765.1| Mus musculus cDNA, clone:Y1G0146B17, strand:unspecified Length = 364 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcctattgggaatttctttg 198 |||||||||||||||||||| Sbjct: 302 gcctattgggaatttctttg 283
>dbj|AB001455.1| Porphyromonas gingivalis rmlA, rmlC, rmlD, rmlB genes for glucose-1-phosphate thymidylyltransferase, dTDP-4-dehydrorhamnose 3,5-epimerase, dTDP-4-dehydrorhamnose reductase, dTDP-glucose 4,6-dehydratase, complete cds Length = 5361 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gttgttccagaaagccagaacagg 311 |||||||| ||||||||||||||| Sbjct: 832 gttgttcccgaaagccagaacagg 809
>dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T22B15 Length = 112406 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tttcactgcaacaatatctc 271 |||||||||||||||||||| Sbjct: 85610 tttcactgcaacaatatctc 85591
>dbj|AP002033.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F1M23 Length = 112684 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tttcactgcaacaatatctc 271 |||||||||||||||||||| Sbjct: 57706 tttcactgcaacaatatctc 57687
>gb|AF168792.1|AF168792 Gallid herpesvirus 1 ICP18.5 gene, partial cds; DNA binding protein, DNA polymerase, UL31 homolog, UL32 homolog, UL33 homolog, UL34 homolog, UL35 homolog, very large tegument protein, UL37 homolog, capsid assembly protein, ribonucleotide reductase large subunit, ribonucleotide reductase small subunit, virion host shutoff (VHS), and UL42 homolog genes, complete cds; and UL43 homolog gene, partial cds Length = 31424 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 ctgcaacaatatctctggat 276 |||||||||||||||||||| Sbjct: 645 ctgcaacaatatctctggat 664
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 gttgttccagaaagccagaacagg 311 |||||||| ||||||||||||||| Sbjct: 1642929 gttgttcccgaaagccagaacagg 1642952
>emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chromosome 4, complete sequence Length = 236166 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 tccagcagcctgcagcagaa 556 |||||||||||||||||||| Sbjct: 213029 tccagcagcctgcagcagaa 213010
>dbj|AB070942.1| Streptomyces avermitilis polyketide-2 biosynthetic gene cluster Length = 27522 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cggcgtcgagttccacgtcg 90 |||||||||||||||||||| Sbjct: 8369 cggcgtcgagttccacgtcg 8388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,885,689 Number of Sequences: 3902068 Number of extensions: 4885689 Number of successful extensions: 88597 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88270 Number of HSP's gapped (non-prelim): 325 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
