Clone Information

BLAST Search Result

Clone Name	baal40o01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_185970.1\| Oryza sativa (japonica cultivar-group), mRNA	258	2e-65
2	gb\|AY108992.1\| Zea mays PCO062765 mRNA sequence	214	3e-52
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
4	dbj\|AP005184.5\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
5	ref\|XM_479396.1\| Oryza sativa (japonica cultivar-group), mRNA	168	1e-38
6	dbj\|AK060061.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	1e-38
7	dbj\|AP005182.5\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
8	ref\|NM_121375.3\| Arabidopsis thaliana unknown protein AT5G13720 ...	70	1e-08
9	ref\|NM_121376.2\| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4)...	70	1e-08
10	gb\|AY150387.1\| Arabidopsis thaliana unknown protein (At5g13720) ...	70	1e-08
11	gb\|AY096494.1\| Arabidopsis thaliana unknown protein (At5g13720) ...	70	1e-08
12	dbj\|AB021119.1\| Arabidopsis thaliana sigD gene for RNA polymeras...	70	1e-08
13	dbj\|AB006704.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	70	1e-08
14	gb\|AY110425.1\| Zea mays CL28396_2 mRNA sequence	70	1e-08
15	gb\|AC025905.3\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
16	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
17	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
18	emb\|CT573502.2\| Medicago truncatula chromosome 5 clone mte1-69f2...	44	0.59
19	gb\|AC133874.10\| Mus musculus chromosome 19, clone RP23-81N16, co...	42	2.3
20	gb\|AC120416.11\| Mus musculus chromosome 1, clone RP24-472N18, co...	40	9.2
21	gb\|AE017350.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	9.2
22	ref\|XM_603414.2\| PREDICTED: Bos taurus similar to mitochondrial ...	40	9.2
23	ref\|XM_955005.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.2
24	ref\|XM_325692.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.2
25	gb\|AY814775.1\| Schistosoma japonicum SJCHGC09088 protein mRNA, c...	40	9.2
26	ref\|XM_567554.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	9.2
27	emb\|AL939125.1\|SCO939125 Streptomyces coelicolor A3(2) complete ...	40	9.2
28	emb\|AL939105.1\|SCO939105 Streptomyces coelicolor A3(2) complete ...	40	9.2
29	gb\|AC018600.6\| Homo sapiens, clone RP11-26L8, complete sequence	40	9.2
30	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	9.2
31	gb\|CP000254.1\| Methanospirillum hungatei JF-1, complete genome	40	9.2
32	gb\|AY747397.1\| Arachis hypogaea isolate PLTRP2B09 resistance pro...	40	9.2
33	gb\|AY747362.1\| Arachis hypogaea isolate PLTRP2B05 resistance pro...	40	9.2
34	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	9.2
35	gb\|AF255948.1\|AF255948 Physarum polycephalum LIG1 gene, partial cds	40	9.2
36	emb\|BX296515.11\| Pig DNA sequence from clone PigE-121D21, comple...	40	9.2
37	gb\|BT024054.1\| Zea mays clone EL01N0439D05 mRNA sequence	40	9.2
38	emb\|AL359397.3\|CNS05TE2 Human chromosome 14 DNA sequence BAC R-2...	40	9.2
39	gb\|AC113456.9\| Mus musculus chromosome 1, clone RP23-257E16, com...	40	9.2
40	emb\|AL606902.26\| Mouse DNA sequence from clone RP23-167A12 on ch...	40	9.2
41	emb\|AL645530.11\| Mouse DNA sequence from clone RP23-92N10 on chr...	40	9.2
42	emb\|AL645484.14\| Mouse DNA sequence from clone RP23-38A10 on chr...	40	9.2

>ref|NM_185970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 861

 Score =  258 bits (130), Expect = 2e-65
 Identities = 340/410 (82%)
 Strand = Plus / Plus

                                                                       
Query: 25  cagatggtcctcaaggtcgtcgaggccattgatgtgtatcttgctggcaccgtcatgctg 84
           |||||||||||||| || ||||| ||||||||||| ||||| ||||| || |||||||||
Sbjct: 451 cagatggtcctcaaagttgtcgaagccattgatgtttatctcgctggaacagtcatgctg 510

                                                                       
Query: 85  atcttcgggatgggtctctacgggctgttcatcagcaacgcgtccaacgatctgccttcc 144
           ||||| ||||||||  | ||||||||||||||||||||  | || |  ||| | ||||| 
Sbjct: 511 atctttgggatgggcttgtacgggctgttcatcagcaatacttctactgatgttccttct 570

                                                                       
Query: 145 ggatccgaccgggctctgcaaggatcgtcgctgttcgggatgttcgctctgaaggagagg 204
           |  || ||| | |||||||| ||||| ||  | || |||||||| ||| | ||||| || 
Sbjct: 571 gagtctgacagagctctgcagggatcatccttatttgggatgtttgctttaaaggaaaga 630

                                                                       
Query: 205 ccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggcacgtcatc 264
           || |||||||||||||| || ||||||||||| || || ||||| || ||||| ||||||
Sbjct: 631 ccaaagtggatgaagattacctccctggacgaactgaaaaccaaagtagggcatgtcatc 690

                                                                       
Query: 265 gtgatgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatcaccacgggg 324
           || |||||||| |||||||||||||||||| ||||||| ||||||||||| || ||||||
Sbjct: 691 gtcatgatccttctggtgaagatgttcgagaggagcaaaatggtgaagataacaacgggg 750

                                                                       
Query: 325 ctggacctgctcagctactcggtctgcatcttcctctcctcggcctccctctacatcctg 384
            |||||||||| ||||||||||||||||||||||| || || || || || |||||||||
Sbjct: 751 ttggacctgctgagctactcggtctgcatcttcctgtcgtccgcttcactgtacatcctg 810

                                                             
Query: 385 cataacctccaccggcccgagcacgaggagtcggtgatgccccacttgta 434
           || ||||| ||| |||| || || || || ||||| |||||  |||||||
Sbjct: 811 cacaaccttcacaggcctgaacaggatgactcggttatgccaaacttgta 860

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>gb|AY108992.1| Zea mays PCO062765 mRNA sequence
          Length = 499

 Score =  214 bits (108), Expect = 3e-52
 Identities = 249/296 (84%)
 Strand = Plus / Plus

                                                                       
Query: 91  gggatgggtctctacgggctgttcatcagcaacgcgtccaacgatctgccttccggatcc 150
           ||||||||||||||||| || ||||||||||||||  ||  || | | ||| | | ||||
Sbjct: 12  gggatgggtctctacggcctcttcatcagcaacgctcccgccggtgttcctcctgaatcc 71

                                                                       
Query: 151 gaccgggctctgcaaggatcgtcgctgttcgggatgttcgctctgaaggagaggccgaag 210
           ||||| || ||    || |||||| ||||||||||||||||| |||||||  | ||||||
Sbjct: 72  gaccgtgccctcagcggctcgtcgttgttcgggatgttcgctttgaaggaacgcccgaag 131

                                                                       
Query: 211 tggatgaagatcacgtccctggacgagctcaagaccaaggttgggcacgtcatcgtgatg 270
           |||||||| ||||| || || |||||||||||||| || || ||||||||||||||||||
Sbjct: 132 tggatgaacatcacctcgcttgacgagctcaagacaaaagtggggcacgtcatcgtgatg 191

                                                                       
Query: 271 atcctgctggtgaagatgttcgagcggagcaagatggtgaagatcaccacggggctggac 330
           || || || |||||||||||||||  |||||||||||||| |||  ||||||||||||||
Sbjct: 192 attctacttgtgaagatgttcgagaagagcaagatggtgacgatagccacggggctggac 251

                                                                   
Query: 331 ctgctcagctactcggtctgcatcttcctctcctcggcctccctctacatcctgca 386
           || |||||||||||| ||||||||||| | || || || || ||||||||||||||
Sbjct: 252 ctcctcagctactcgatctgcatcttcttgtcgtcagcttctctctacatcctgca 307

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  188 bits (95), Expect = 2e-44
 Identities = 194/227 (85%)
 Strand = Plus / Plus

                                                                            
Query: 208      aagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggcacgtcatcgtg 267
                |||||||||||||| || ||||||||||| || || ||||| || ||||| |||||||| 
Sbjct: 27579251 aagtggatgaagattacctccctggacgaactgaaaaccaaagtagggcatgtcatcgtc 27579310

                                                                            
Query: 268      atgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatcaccacggggctg 327
                |||||||| |||||||||||||||||| ||||||| ||||||||||| || |||||| ||
Sbjct: 27579311 atgatccttctggtgaagatgttcgagaggagcaaaatggtgaagataacaacggggttg 27579370

                                                                            
Query: 328      gacctgctcagctactcggtctgcatcttcctctcctcggcctccctctacatcctgcat 387
                |||||||| ||||||||||||||||||||||| || || || || || ||||||||||| 
Sbjct: 27579371 gacctgctgagctactcggtctgcatcttcctgtcgtccgcttcactgtacatcctgcac 27579430

                                                               
Query: 388      aacctccaccggcccgagcacgaggagtcggtgatgccccacttgta 434
                ||||| ||| |||| || || || || ||||| |||||  |||||||
Sbjct: 27579431 aaccttcacaggcctgaacaggatgactcggttatgccaaacttgta 27579477



 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Plus

                                                                            
Query: 197      aggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggc 256
                ||||||| |||| ||||||||  ||||  || || || |||||||| || ||| | || |
Sbjct: 27575946 aggagagaccgaggtggatgagaatcagctctctcgatgagctcaaaacgaagctgggcc 27576005

                                                                            
Query: 257      acgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatca 316
                || ||||||||||||| || |||||||||||||||||| |||||||||||||| | ||||
Sbjct: 27576006 acatcatcgtgatgattctcctggtgaagatgttcgagaggagcaagatggtgcacatca 27576065

                                                                            
Query: 317      ccacggggctggacctgctcagctactcggtctgcatcttcctctcctcggcctccctct 376
                |||||||  ||||||||||||||||| |||||||||||||| | || ||||| ||||| |
Sbjct: 27576066 ccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcgtcggcttccctgt 27576125

                                
Query: 377      acatcctgcataacct 392
                |||||||||| |||||
Sbjct: 27576126 acatcctgcacaacct 27576141



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                            
Query: 55       gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 114
                ||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||||
Sbjct: 27575642 gatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctgttc 27575701

                          
Query: 115      atcagcaacg 124
                ||||||||||
Sbjct: 27575702 atcagcaacg 27575711



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                            
Query: 55       gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 114
                ||||| ||||| ||||| || |||||||||||||| ||||||||  | ||||||||||||
Sbjct: 27578676 gatgtttatctcgctggaacagtcatgctgatctttgggatgggcttgtacgggctgttc 27578735

                        
Query: 115      atcagcaa 122
                ||||||||
Sbjct: 27578736 atcagcaa 27578743

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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  188 bits (95), Expect = 2e-44
 Identities = 194/227 (85%)
 Strand = Plus / Plus

                                                                         
Query: 208   aagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggcacgtcatcgtg 267
             |||||||||||||| || ||||||||||| || || ||||| || ||||| |||||||| 
Sbjct: 36244 aagtggatgaagattacctccctggacgaactgaaaaccaaagtagggcatgtcatcgtc 36303

                                                                         
Query: 268   atgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatcaccacggggctg 327
             |||||||| |||||||||||||||||| ||||||| ||||||||||| || |||||| ||
Sbjct: 36304 atgatccttctggtgaagatgttcgagaggagcaaaatggtgaagataacaacggggttg 36363

                                                                         
Query: 328   gacctgctcagctactcggtctgcatcttcctctcctcggcctccctctacatcctgcat 387
             |||||||| ||||||||||||||||||||||| || || || || || ||||||||||| 
Sbjct: 36364 gacctgctgagctactcggtctgcatcttcctgtcgtccgcttcactgtacatcctgcac 36423

                                                            
Query: 388   aacctccaccggcccgagcacgaggagtcggtgatgccccacttgta 434
             ||||| ||| |||| || || || || ||||| |||||  |||||||
Sbjct: 36424 aaccttcacaggcctgaacaggatgactcggttatgccaaacttgta 36470



 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Plus

                                                                         
Query: 197   aggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggc 256
             ||||||| |||| ||||||||  ||||  || || || |||||||| || ||| | || |
Sbjct: 32939 aggagagaccgaggtggatgagaatcagctctctcgatgagctcaaaacgaagctgggcc 32998

                                                                         
Query: 257   acgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatca 316
             || ||||||||||||| || |||||||||||||||||| |||||||||||||| | ||||
Sbjct: 32999 acatcatcgtgatgattctcctggtgaagatgttcgagaggagcaagatggtgcacatca 33058

                                                                         
Query: 317   ccacggggctggacctgctcagctactcggtctgcatcttcctctcctcggcctccctct 376
             |||||||  ||||||||||||||||| |||||||||||||| | || ||||| ||||| |
Sbjct: 33059 ccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcgtcggcttccctgt 33118

                             
Query: 377   acatcctgcataacct 392
             |||||||||| |||||
Sbjct: 33119 acatcctgcacaacct 33134



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                         
Query: 55    gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 114
             ||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||||
Sbjct: 32635 gatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctgttc 32694

                       
Query: 115   atcagcaacg 124
             ||||||||||
Sbjct: 32695 atcagcaacg 32704



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 55    gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 114
             ||||| ||||| ||||| || |||||||||||||| ||||||||  | ||||||||||||
Sbjct: 35669 gatgtttatctcgctggaacagtcatgctgatctttgggatgggcttgtacgggctgttc 35728

                     
Query: 115   atcagcaa 122
             ||||||||
Sbjct: 35729 atcagcaa 35736

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>ref|XM_479396.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1073

 Score =  168 bits (85), Expect = 1e-38
 Identities = 178/209 (85%)
 Strand = Plus / Plus

                                                                       
Query: 184 atgttcgctctgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaag 243
           ||||| ||| |||||||||| |||| ||||||||  ||||  || || || |||||||| 
Sbjct: 635 atgtttgctttgaaggagagaccgaggtggatgagaatcagctctctcgatgagctcaaa 694

                                                                       
Query: 244 accaaggttgggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaag 303
           || ||| | || ||| ||||||||||||| || |||||||||||||||||| ||||||||
Sbjct: 695 acgaagctgggccacatcatcgtgatgattctcctggtgaagatgttcgagaggagcaag 754

                                                                       
Query: 304 atggtgaagatcaccacggggctggacctgctcagctactcggtctgcatcttcctctcc 363
           |||||| | |||||||||||  ||||||||||||||||| |||||||||||||| | || 
Sbjct: 755 atggtgcacatcaccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcg 814

                                        
Query: 364 tcggcctccctctacatcctgcataacct 392
           ||||| ||||| ||||||||||| |||||
Sbjct: 815 tcggcttccctgtacatcctgcacaacct 843



 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                       
Query: 25  cagatggtcctcaaggtcgtcgaggccattgatgtgtatcttgctggcaccgtcatgctg 84
           ||||||||||||| | |||||||||| || ||||||||||||||||| || |||||||||
Sbjct: 479 cagatggtcctcaggctcgtcgaggctatcgatgtgtatcttgctggaacagtcatgctg 538

                                                   
Query: 85  atcttcgggatgggtctctacgggctgttcatcagcaacg 124
           || || ||||||||||| || |||||||||||||||||||
Sbjct: 539 atttttgggatgggtctgtatgggctgttcatcagcaacg 578

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>dbj|AK060061.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F12, full
           insert sequence
          Length = 1073

 Score =  168 bits (85), Expect = 1e-38
 Identities = 178/209 (85%)
 Strand = Plus / Plus

                                                                       
Query: 184 atgttcgctctgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaag 243
           ||||| ||| |||||||||| |||| ||||||||  ||||  || || || |||||||| 
Sbjct: 635 atgtttgctttgaaggagagaccgaggtggatgagaatcagctctctcgatgagctcaaa 694

                                                                       
Query: 244 accaaggttgggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaag 303
           || ||| | || ||| ||||||||||||| || |||||||||||||||||| ||||||||
Sbjct: 695 acgaagctgggccacatcatcgtgatgattctcctggtgaagatgttcgagaggagcaag 754

                                                                       
Query: 304 atggtgaagatcaccacggggctggacctgctcagctactcggtctgcatcttcctctcc 363
           |||||| | |||||||||||  ||||||||||||||||| |||||||||||||| | || 
Sbjct: 755 atggtgcacatcaccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcg 814

                                        
Query: 364 tcggcctccctctacatcctgcataacct 392
           ||||| ||||| ||||||||||| |||||
Sbjct: 815 tcggcttccctgtacatcctgcacaacct 843



 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                       
Query: 25  cagatggtcctcaaggtcgtcgaggccattgatgtgtatcttgctggcaccgtcatgctg 84
           ||||||||||||| | |||||||||| || ||||||||||||||||| || |||||||||
Sbjct: 479 cagatggtcctcaggctcgtcgaggctatcgatgtgtatcttgctggaacagtcatgctg 538

                                                   
Query: 85  atcttcgggatgggtctctacgggctgttcatcagcaacg 124
           || || ||||||||||| || |||||||||||||||||||
Sbjct: 539 atttttgggatgggtctgtatgggctgttcatcagcaacg 578

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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0018C07
          Length = 141707

 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Plus

                                                                          
Query: 197    aggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggc 256
              ||||||| |||| ||||||||  ||||  || || || |||||||| || ||| | || |
Sbjct: 139917 aggagagaccgaggtggatgagaatcagctctctcgatgagctcaaaacgaagctgggcc 139976

                                                                          
Query: 257    acgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatca 316
              || ||||||||||||| || |||||||||||||||||| |||||||||||||| | ||||
Sbjct: 139977 acatcatcgtgatgattctcctggtgaagatgttcgagaggagcaagatggtgcacatca 140036

                                                                          
Query: 317    ccacggggctggacctgctcagctactcggtctgcatcttcctctcctcggcctccctct 376
              |||||||  ||||||||||||||||| |||||||||||||| | || ||||| ||||| |
Sbjct: 140037 ccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcgtcggcttccctgt 140096

                              
Query: 377    acatcctgcataacct 392
              |||||||||| |||||
Sbjct: 140097 acatcctgcacaacct 140112



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                          
Query: 55     gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 114
              ||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||||
Sbjct: 139613 gatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctgttc 139672

                        
Query: 115    atcagcaacg 124
              ||||||||||
Sbjct: 139673 atcagcaacg 139682

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>ref|NM_121375.3| Arabidopsis thaliana unknown protein AT5G13720 mRNA, complete cds
          Length = 1012

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                       
Query: 194 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 253
           |||||||||| || || |||||||||||||  || || || ||||| || ||||| || |
Sbjct: 691 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 750

                                                                  
Query: 254 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 308
           | || ||||| || ||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 751 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 805

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>ref|NM_121376.2| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4); DNA binding /
            DNA-directed RNA polymerase/ transcription factor
            AT5G13730 (SIGD) mRNA, complete cds
          Length = 1785

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 194  tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 253
            |||||||||| || || |||||||||||||  || || || ||||| || ||||| || |
Sbjct: 1670 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 1611

                                                                   
Query: 254  ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 308
            | || ||||| || ||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 1610 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 1556

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>gb|AY150387.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds
          Length = 820

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                       
Query: 194 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 253
           |||||||||| || || |||||||||||||  || || || ||||| || ||||| || |
Sbjct: 572 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 631

                                                                  
Query: 254 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 308
           | || ||||| || ||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 632 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 686

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>gb|AY096494.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds
          Length = 974

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                       
Query: 194 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 253
           |||||||||| || || |||||||||||||  || || || ||||| || ||||| || |
Sbjct: 691 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 750

                                                                  
Query: 254 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 308
           | || ||||| || ||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 751 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 805

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>dbj|AB021119.1| Arabidopsis thaliana sigD gene for RNA polymerase sigma subunit SigD
            and spliced variant SigD*, complete cds
          Length = 2975

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 194  tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 253
            |||||||||| || || |||||||||||||  || || || ||||| || ||||| || |
Sbjct: 2451 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 2392

                                                                   
Query: 254  ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 308
            | || ||||| || ||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 2391 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 2337

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>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
          Length = 79259

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                         
Query: 194   tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 253
             |||||||||| || || |||||||||||||  || || || ||||| || ||||| || |
Sbjct: 72018 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 72077

                                                                    
Query: 254   ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 308
             | || ||||| || ||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 72078 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 72132

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>gb|AY110425.1| Zea mays CL28396_2 mRNA sequence
          Length = 1071

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 55  gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 114
           ||||||||||||||||  || |||||| |||| || ||||||||||||||||| || |||
Sbjct: 179 gatgtgtatcttgctgaaacggtcatgttgatatttgggatgggtctctacggtctcttc 238

                      
Query: 115 atcagcaacgc 125
            ||||||||||
Sbjct: 239 gtcagcaacgc 249

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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                            
Query: 76    gtcatgctgatcttcgggatgggtctctacgggctgttcatcagcaa 122
             ||||||||||| || ||||||||| | |||||| |||||||||||||
Sbjct: 15595 gtcatgctgatttt-gggatgggtatgtacgggttgttcatcagcaa 15640

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                               
Query: 76       gtcatgctgatcttcgggatgggtctctacgggctgttcatcagcaa 122
                ||||||||||| || ||||||||| | |||||| |||||||||||||
Sbjct: 16136706 gtcatgctgatttt-gggatgggtatgtacgggttgttcatcagcaa 16136751

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                               
Query: 76       gtcatgctgatcttcgggatgggtctctacgggctgttcatcagcaa 122
                ||||||||||| || ||||||||| | |||||| |||||||||||||
Sbjct: 16144947 gtcatgctgatttt-gggatgggtatgtacgggttgttcatcagcaa 16144992

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>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE
          Length = 89977

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 635  aaaacattcatatagcacaaaa 656
            ||||||||||||||||||||||
Sbjct: 7706 aaaacattcatatagcacaaaa 7685

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>gb|AC133874.10| Mus musculus chromosome 19, clone RP23-81N16, complete sequence
          Length = 215113

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 351    catcttcctctcctcggcctccctc 375
              |||||||||||||||| ||||||||
Sbjct: 178239 catcttcctctcctcgacctccctc 178263

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>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence
          Length = 199727

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 351   catcttcctctcctcggcctccct 374
             |||||||||| |||||||||||||
Sbjct: 22300 catcttcctcccctcggcctccct 22277

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>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    ggagaggccgaagtggatga 217
              ||||||||||||||||||||
Sbjct: 764039 ggagaggccgaagtggatga 764020

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>ref|XM_603414.2| PREDICTED: Bos taurus similar to mitochondrial protein 18 kDa
           isoform a (LOC525071), mRNA
          Length = 1123

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 cggcctccctctacatcctg 384
           ||||||||||||||||||||
Sbjct: 401 cggcctccctctacatcctg 420

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>ref|XM_955005.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial
            mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  tcttcctctcctcggcctcc 372
            ||||||||||||||||||||
Sbjct: 1012 tcttcctctcctcggcctcc 993

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>ref|XM_325692.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial
            mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  tcttcctctcctcggcctcc 372
            ||||||||||||||||||||
Sbjct: 1012 tcttcctctcctcggcctcc 993

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>gb|AY814775.1| Schistosoma japonicum SJCHGC09088 protein mRNA, complete cds
          Length = 745

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 629 ttattcaaaacattcatata 648
           ||||||||||||||||||||
Sbjct: 604 ttattcaaaacattcatata 585

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>ref|XM_567554.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNJ02640) partial mRNA
          Length = 809

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ggagaggccgaagtggatga 217
           ||||||||||||||||||||
Sbjct: 679 ggagaggccgaagtggatga 698

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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    agatcacgtccctggacgag 237
              ||||||||||||||||||||
Sbjct: 142470 agatcacgtccctggacgag 142451

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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   accggcccgagcacgaggag 414
             ||||||||||||||||||||
Sbjct: 66259 accggcccgagcacgaggag 66240

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>gb|AC018600.6| Homo sapiens, clone RP11-26L8, complete sequence
          Length = 159469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   actttattcaaaacattcat 645
             ||||||||||||||||||||
Sbjct: 17281 actttattcaaaacattcat 17300

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 547     tgcgcggtggtcgaccggtt 566
               ||||||||||||||||||||
Sbjct: 2393323 tgcgcggtggtcgaccggtt 2393304

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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     ccgaagtggatgaagatcac 224
               ||||||||||||||||||||
Sbjct: 3355421 ccgaagtggatgaagatcac 3355402

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>gb|AY747397.1| Arachis hypogaea isolate PLTRP2B09 resistance protein PLTR gene,
           partial cds
          Length = 529

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 625 aactttattcaaaacattcatata 648
           ||||||||||||||||||| ||||
Sbjct: 483 aactttattcaaaacattcttata 460

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>gb|AY747362.1| Arachis hypogaea isolate PLTRP2B05 resistance protein PLTR gene,
           partial cds
          Length = 529

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 625 aactttattcaaaacattcatata 648
           ||||||||||||||||||| ||||
Sbjct: 483 aactttattcaaaacattcttata 460

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     agatcacgtccctggacgag 237
               ||||||||||||||||||||
Sbjct: 2919285 agatcacgtccctggacgag 2919304

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>gb|AF255948.1|AF255948 Physarum polycephalum LIG1 gene, partial cds
          Length = 1654

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 634 caaaacattcatatagcacaaaat 657
           ||||||||| ||||||||||||||
Sbjct: 285 caaaacattaatatagcacaaaat 308

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>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence
          Length = 179691

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     tcctcaaggtcgtcgaggccattg 55
              |||||||||||||| |||||||||
Sbjct: 123832 tcctcaaggtcgtcaaggccattg 123809

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>gb|BT024054.1| Zea mays clone EL01N0439D05 mRNA sequence
          Length = 1966

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  tcttcctctcctcggcctcc 372
            ||||||||||||||||||||
Sbjct: 1326 tcttcctctcctcggcctcc 1307

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>emb|AL359397.3|CNS05TE2 Human chromosome 14 DNA sequence BAC R-247L20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168193

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 618   aaggaagaactttattcaaaacat 641
             ||||||| ||||||||||||||||
Sbjct: 35815 aaggaaggactttattcaaaacat 35838

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>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence
          Length = 174902

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 351    catcttcctctcctcggcctccct 374
              |||||||||| |||||||||||||
Sbjct: 101434 catcttcctcccctcggcctccct 101457

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>emb|AL606902.26| Mouse DNA sequence from clone RP23-167A12 on chromosome 4, complete
            sequence
          Length = 100421

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  cctccctctacatcctgcat 387
            ||||||||||||||||||||
Sbjct: 7814 cctccctctacatcctgcat 7833

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>emb|AL645530.11| Mouse DNA sequence from clone RP23-92N10 on chromosome 11, complete
             sequence
          Length = 91481

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   aggagaggccgaagtggatg 216
             ||||||||||||||||||||
Sbjct: 91035 aggagaggccgaagtggatg 91016

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>emb|AL645484.14| Mouse DNA sequence from clone RP23-38A10 on chromosome 11, complete
            sequence
          Length = 161787

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 197  aggagaggccgaagtggatg 216
            ||||||||||||||||||||
Sbjct: 1554 aggagaggccgaagtggatg 1535


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,894,702
Number of Sequences: 3902068
Number of extensions: 4894702
Number of successful extensions: 94229
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93866
Number of HSP's gapped (non-prelim): 363
length of query: 672
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 649
effective length of database: 17,143,297,704
effective search space: 11126000209896
effective search space used: 11126000209896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result