ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40n10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018583.1| Zea mays clone EL01N0446D08.d mRNA sequence Length = 1868 Score = 97.6 bits (49), Expect = 1e-17 Identities = 57/60 (95%) Strand = Plus / Plus Query: 110 gacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagcttcgccaaggt 169 |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| Sbjct: 191 gacgcgggtggggccgtacgaggtcggcaagaccatcggggagggcagcttcgccaaggt 250
>ref|NM_187581.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1629 Score = 83.8 bits (42), Expect = 2e-13 Identities = 65/73 (89%) Strand = Plus / Plus Query: 100 cgaggcggacgacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagct 159 ||||| |||||||| ||||||||| ||||||||||| ||||| ||||| ||||| |||| Sbjct: 53 cgaggaggacgacgagggtggggcgctacgagctcggcaagacgatcggggaggggagct 112 Query: 160 tcgccaaggtcaa 172 ||||||||||||| Sbjct: 113 tcgccaaggtcaa 125
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 2e-13 Identities = 65/73 (89%) Strand = Plus / Minus Query: 100 cgaggcggacgacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagct 159 ||||| |||||||| ||||||||| ||||||||||| ||||| ||||| ||||| |||| Sbjct: 1498579 cgaggaggacgacgagggtggggcgctacgagctcggcaagacgatcggggaggggagct 1498520 Query: 160 tcgccaaggtcaa 172 ||||||||||||| Sbjct: 1498519 tcgccaaggtcaa 1498507 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggccgaggcggacgacgcgggtgg 120 ||||||||||| |||||||||||| Sbjct: 20371032 ggccgaggcgggcgacgcgggtgg 20371009
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07, complete sequence Length = 117612 Score = 83.8 bits (42), Expect = 2e-13 Identities = 65/73 (89%) Strand = Plus / Minus Query: 100 cgaggcggacgacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagct 159 ||||| |||||||| ||||||||| ||||||||||| ||||| ||||| ||||| |||| Sbjct: 35752 cgaggaggacgacgagggtggggcgctacgagctcggcaagacgatcggggaggggagct 35693 Query: 160 tcgccaaggtcaa 172 ||||||||||||| Sbjct: 35692 tcgccaaggtcaa 35680
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 2e-13 Identities = 65/73 (89%) Strand = Plus / Minus Query: 100 cgaggcggacgacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagct 159 ||||| |||||||| ||||||||| ||||||||||| ||||| ||||| ||||| |||| Sbjct: 1498577 cgaggaggacgacgagggtggggcgctacgagctcggcaagacgatcggggaggggagct 1498518 Query: 160 tcgccaaggtcaa 172 ||||||||||||| Sbjct: 1498517 tcgccaaggtcaa 1498505 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggccgaggcggacgacgcgggtgg 120 ||||||||||| |||||||||||| Sbjct: 20364061 ggccgaggcgggcgacgcgggtgg 20364038
>ref|XM_476651.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1893 Score = 71.9 bits (36), Expect = 6e-10 Identities = 56/63 (88%) Strand = Plus / Plus Query: 110 gacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagcttcgccaaggt 169 ||||||||||||| |||||||||||| | ||| |||||||||||| |||||||||||| Sbjct: 302 gacgcgggtggggaggtacgagctcgggaggacgctcggcgagggcaccttcgccaaggt 361 Query: 170 caa 172 ||| Sbjct: 362 caa 364
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 71.9 bits (36), Expect = 6e-10 Identities = 56/63 (88%) Strand = Plus / Minus Query: 110 gacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagcttcgccaaggt 169 ||||||||||||| |||||||||||| | ||| |||||||||||| |||||||||||| Sbjct: 2679626 gacgcgggtggggaggtacgagctcgggaggacgctcggcgagggcaccttcgccaaggt 2679567 Query: 170 caa 172 ||| Sbjct: 2679566 caa 2679564
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 71.9 bits (36), Expect = 6e-10 Identities = 56/63 (88%) Strand = Plus / Minus Query: 110 gacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagcttcgccaaggt 169 ||||||||||||| |||||||||||| | ||| |||||||||||| |||||||||||| Sbjct: 105344 gacgcgggtggggaggtacgagctcgggaggacgctcggcgagggcaccttcgccaaggt 105285 Query: 170 caa 172 ||| Sbjct: 105284 caa 105282
>dbj|AK069726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M13, full insert sequence Length = 1894 Score = 71.9 bits (36), Expect = 6e-10 Identities = 56/63 (88%) Strand = Plus / Plus Query: 110 gacgcgggtggggccgtacgagctcggnaagaccatcggcgagggcagcttcgccaaggt 169 ||||||||||||| |||||||||||| | ||| |||||||||||| |||||||||||| Sbjct: 301 gacgcgggtggggaggtacgagctcgggaggacgctcggcgagggcaccttcgccaaggt 360 Query: 170 caa 172 ||| Sbjct: 361 caa 363
>gb|DQ124052.1| Coffea arabica clone MN-SSH3-G10 mRNA sequence Length = 140 Score = 58.0 bits (29), Expect = 9e-06 Identities = 43/48 (89%) Strand = Plus / Minus Query: 125 gtacgagctcggnaagaccatcggcgagggcagcttcgccaaggtcaa 172 |||||||||||| ||||| |||| || |||||||||||||||||||| Sbjct: 140 gtacgagctcgggaagacgctcggggaaggcagcttcgccaaggtcaa 93
>gb|AY106174.1| Zea mays PCO144723 mRNA sequence Length = 1844 Score = 58.0 bits (29), Expect = 9e-06 Identities = 49/56 (87%) Strand = Plus / Plus Query: 117 gtggggccgtacgagctcggnaagaccatcggcgagggcagcttcgccaaggtcaa 172 ||||||| |||||||||||| |||| ||||||| |||| ||||||||||||||| Sbjct: 377 gtggggcggtacgagctcggccggaccctcggcgaaggcaccttcgccaaggtcaa 432
>ref|XM_540890.2| PREDICTED: Canis familiaris similar to Serine/threonine-protein kinase MARK2 (MAP/microtubule affinity-regulating kinase 2) (ELKL motif kinase) (EMK1) (PAR1 homolog) (LOC483769), mRNA Length = 2562 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Plus Query: 138 aagaccatcggcgagggcagcttcgccaaggt 169 |||||||||||| |||||| |||||||||||| Sbjct: 229 aagaccatcggcaagggcaacttcgccaaggt 260
>emb|CR388913.1| Gallus gallus finished cDNA, clone ChEST168n22 Length = 782 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Plus Query: 141 accatcggcgagggcagcttcgccaaggtcaa 172 ||||||||| |||||| ||||||||||||||| Sbjct: 86 accatcggcaagggcaacttcgccaaggtcaa 117
>gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151482 Score = 44.1 bits (22), Expect = 0.14 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 tggcggcggcggncaggggcggggggccg 101 ||||||||||| |||||||||||||||| Sbjct: 66485 tggcggcggcgcgcaggggcggggggccg 66513
>ref|XM_600972.2| PREDICTED: Bos taurus similar to Bone morphogenetic protein 6 precursor (BMP-6) (VG-1-related protein) (VGR-1) (LOC522687), mRNA Length = 954 Score = 42.1 bits (21), Expect = 0.54 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 ggcggcggcggncaggggcggggg 97 ||||||||||| |||||||||||| Sbjct: 87 ggcggcggcgggcaggggcggggg 64
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 42.1 bits (21), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Plus Query: 98 gccgaggcggacgacgcgggtgggg 122 |||| |||||||||||||||||||| Sbjct: 47846 gccgtggcggacgacgcgggtgggg 47870
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 tcggcgagggcagcttcgccaaggt 169 |||||||||||| |||||||||||| Sbjct: 20144295 tcggcgagggcaacttcgccaaggt 20144271 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 71 gatggcggcggcggncaggggc 92 |||||||||||||| ||||||| Sbjct: 28204278 gatggcggcggcggccaggggc 28204299
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0007G12 Length = 111819 Score = 42.1 bits (21), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 tcggcgagggcagcttcgccaaggt 169 |||||||||||| |||||||||||| Sbjct: 10295 tcggcgagggcaacttcgccaaggt 10271
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1068H08 Length = 152794 Score = 42.1 bits (21), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 tcggcgagggcagcttcgccaaggt 169 |||||||||||| |||||||||||| Sbjct: 132569 tcggcgagggcaacttcgccaaggt 132545
>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full insert sequence Length = 1884 Score = 42.1 bits (21), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 tcggcgagggcagcttcgccaaggt 169 |||||||||||| |||||||||||| Sbjct: 157 tcggcgagggcaacttcgccaaggt 181
>ref|NM_184770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1503 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggccgaggcggacgacgcgggtgg 120 ||||||||||| |||||||||||| Sbjct: 205 ggccgaggcgggcgacgcgggtgg 182
>ref|XM_873884.1| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase MARK2 (MAP/microtubule affinity-regulating kinase 2) (ELKL motif kinase) (EMK1) (PAR1 homolog), transcript variant 3 (LOC535197), mRNA Length = 2762 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 138 aagaccatcggcgagggcagcttcgccaaggt 169 |||||||||||| |||| | |||||||||||| Sbjct: 454 aagaccatcggcaagggtaacttcgccaaggt 485
>ref|XM_615209.2| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase MARK2 (MAP/microtubule affinity-regulating kinase 2) (ELKL motif kinase) (EMK1) (PAR1 homolog), transcript variant 1 (LOC535197), mRNA Length = 2924 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 138 aagaccatcggcgagggcagcttcgccaaggt 169 |||||||||||| |||| | |||||||||||| Sbjct: 454 aagaccatcggcaagggtaacttcgccaaggt 485
>ref|XM_426787.1| PREDICTED: Gallus gallus similar to Choline kinase alpha (CK) (CHETK-alpha) (LOC429231), partial mRNA Length = 819 Score = 40.1 bits (20), Expect = 2.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 75 gcggcggcggncaggggcggggg 97 |||||||||| |||||||||||| Sbjct: 157 gcggcggcgggcaggggcggggg 179
>gb|AC022682.16| Mus musculus chromosome 13, clone RP23-476E21, complete sequence Length = 183905 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggggcggggggccgaggcgg 107 |||||||||||||||||||| Sbjct: 31974 ggggcggggggccgaggcgg 31955
>gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 geldanamycin biosynthesis gene cluster, partial sequence Length = 75920 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gggcggggggccgaggcggacgac 112 |||||||||||||| ||||||||| Sbjct: 40984 gggcggggggccgacgcggacgac 41007
>ref|XM_785600.1| PREDICTED: Strongylocentrotus purpuratus similar to hormonally upregulated Neu-associated kinase (LOC585789), partial mRNA Length = 755 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 gaccatcggcgagggcagcttcgc 163 ||||||||||||||| |||||||| Sbjct: 204 gaccatcggcgagggaagcttcgc 227
>ref|XM_788950.1| PREDICTED: Strongylocentrotus purpuratus similar to hormonally upregulated Neu-associated kinase (LOC589306), partial mRNA Length = 904 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 gaccatcggcgagggcagcttcgc 163 ||||||||||||||| |||||||| Sbjct: 204 gaccatcggcgagggaagcttcgc 227
>emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in linkage group 20, complete sequence Length = 247887 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 accatcggcgagggcagcttcgccaaggtcaa 172 ||||||||| |||||| ||| ||||||||||| Sbjct: 89312 accatcggcaagggcaactttgccaaggtcaa 89343
>emb|BX530031.5| Zebrafish DNA sequence from clone DKEY-175M17 in linkage group 21, complete sequence Length = 160736 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 141 accatcggcgagggcagcttcgccaaggtcaa 172 ||||||||| | |||| ||||||||||||||| Sbjct: 49561 accatcggcaaaggcaacttcgccaaggtcaa 49530
>dbj|AK154980.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630113K05 product:Similar to ras responsive element binding protein 1 (Fragment) homolog [Homo sapiens], full insert sequence Length = 4587 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ggggcggggggccgaggcgg 107 |||||||||||||||||||| Sbjct: 60 ggggcggggggccgaggcgg 79
>ref|XM_685188.1| PREDICTED: Danio rerio similar to Serine/threonine-protein kinase MARK2 (MAP/microtubule affinity-regulating kinase 2) (ELKL motif kinase) (EMK1) (PAR1 homolog) (LOC561778), partial mRNA Length = 1802 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 accatcggcgagggcagcttcgccaaggtcaa 172 ||||||||| | |||| ||||||||||||||| Sbjct: 94 accatcggcaaaggcaacttcgccaaggtcaa 125
>ref|NM_026830.1| Mus musculus ras responsive element binding protein 1 (Rreb1), transcript variant 3, mRNA Length = 7437 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ggggcggggggccgaggcgg 107 |||||||||||||||||||| Sbjct: 60 ggggcggggggccgaggcgg 79
>ref|XM_394041.2| PREDICTED: Apis mellifera similar to CG11221-PA (LOC410562), mRNA Length = 2215 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 138 aagaccatcggcgagggcagcttcgccaaggt 169 |||||| |||||||||| || ||||||||||| Sbjct: 518 aagaccctcggcgaggggagtttcgccaaggt 549
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggccgaggcggacgacgcgggtgg 120 ||||||||||| |||||||||||| Sbjct: 15332 ggccgaggcgggcgacgcgggtgg 15309
>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis gene cluster, partial sequence Length = 69644 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gggcggggggccgaggcggacgac 112 |||||||||||||| ||||||||| Sbjct: 33203 gggcggggggccgacgcggacgac 33226
>gb|AC129916.6| Homo sapiens chromosome 17, clone RP11-2L19, complete sequence Length = 167265 Score = 40.1 bits (20), Expect = 2.1 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 79 cggcggncaggggcggggggccgaggcggacgacg 113 |||||| ||||||| ||||| |||||||||||||| Sbjct: 90528 cggcgggcaggggc-gggggacgaggcggacgacg 90495
>dbj|AK102228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087P12, full insert sequence Length = 1744 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggccgaggcggacgacgcgggtgg 120 ||||||||||| |||||||||||| Sbjct: 248 ggccgaggcgggcgacgcgggtgg 225
>gb|AY104543.1| Zea mays PCO131788 mRNA sequence Length = 1707 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 accatcggcgagggcagcttcgccaaggtcaa 172 |||||||| || |||| ||||||||||||||| Sbjct: 153 accatcggggaaggcaccttcgccaaggtcaa 184
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 cgccaccaccgccgtggagaaagc 63 ||||||||| |||||||||||||| Sbjct: 410339 cgccaccactgccgtggagaaagc 410362
>gb|AY557477.1| Idiosepius pygmaeus 18S ribosomal RNA gene, complete sequence Length = 2310 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 ccgaggcggacgacgcggg 117 ||||||||||||||||||| Sbjct: 231 ccgaggcggacgacgcggg 213
>ref|NM_197686.1| Oryza sativa (japonica cultivar-group) putative flavin-containing monooxygenase (OSJNBb0014I11.12), mRNA Length = 1512 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 401 ggagggatggcggcggcgg 419
>ref|XM_463338.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2145 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 221 ggagggatggcggcggcgg 203
>gb|AY022843.1| Oryza sativa microsatellite MRG5168 containing (CGG)X8, genomic sequence Length = 224 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 71 gatggcggcggcggncaggggc 92 |||||||||||||| ||||||| Sbjct: 32 gatggcggcggcggccaggggc 11
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 taggagggatggcggcggc 82 ||||||||||||||||||| Sbjct: 101992 taggagggatggcggcggc 101974
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 94271 ggagggatggcggcggcgg 94253
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 95 ggggccgaggcggacgacgcggg 117 |||||||||||||||| |||||| Sbjct: 2105074 ggggccgaggcggacggcgcggg 2105096
>ref|XM_370084.1| Magnaporthe grisea 70-15 hypothetical protein (MG06599.4) partial mRNA Length = 1896 Score = 38.2 bits (19), Expect = 8.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 145 tcggcgagggcagcttcgccaaggtca 171 ||||| |||||||||||| |||||||| Sbjct: 860 tcggcaagggcagcttcggcaaggtca 886
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 gacgacgcgggtggggccg 125 ||||||||||||||||||| Sbjct: 145802 gacgacgcgggtggggccg 145820
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gggcggggggccgaggcgg 107 ||||||||||||||||||| Sbjct: 1880280 gggcggggggccgaggcgg 1880298
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 140 gaccatcggcgagggcagc 158 ||||||||||||||||||| Sbjct: 37746 gaccatcggcgagggcagc 37764
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 ccgccaccaccgccgtgga 57 ||||||||||||||||||| Sbjct: 356767 ccgccaccaccgccgtgga 356749
>ref|XM_806824.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510005.50) partial mRNA Length = 6275 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 tggtccgccaccaccgccg 53 ||||||||||||||||||| Sbjct: 725 tggtccgccaccaccgccg 743
>emb|AL450325.5| Human DNA sequence from clone RP11-17F15 on chromosome 6 Contains the 5' end of the TReP-132 gene for zinc finger transcription protein, complete sequence Length = 88119 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 gggggccgaggcggacgac 112 ||||||||||||||||||| Sbjct: 68833 gggggccgaggcggacgac 68815
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 38.2 bits (19), Expect = 8.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 90 ggcggggggccgaggcggacgacgcgg 116 |||| ||||||||||||| |||||||| Sbjct: 261100 ggcgcggggccgaggcggccgacgcgg 261074
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 gccgaggcggacgacgcgg 116 ||||||||||||||||||| Sbjct: 80167 gccgaggcggacgacgcgg 80149
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 71 gatggcggcggcggncaggggc 92 |||||||||||||| ||||||| Sbjct: 92969 gatggcggcggcggacaggggc 92990
>gb|AY029769.1| Cryphonectria parasitica protein kinase 1 (pk1) gene, complete cds Length = 3335 Score = 38.2 bits (19), Expect = 8.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 145 tcggcgagggcagcttcgccaaggtca 171 ||||| |||||||||||| |||||||| Sbjct: 1584 tcggcaagggcagcttcggcaaggtca 1610
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 126920 ggagggatggcggcggcgg 126938
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 ggggcggggggccgaggcg 106 ||||||||||||||||||| Sbjct: 3352145 ggggcggggggccgaggcg 3352163
>gb|AF322140.1|AF322140 Sorghum bicolor specimen-voucher PI 302105 teosinte branched1 protein (tb1) gene, partial cds Length = 1074 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 218 ggagggatggcggcggcgg 200
>gb|AF322132.1|AF322132 Sorghum bicolor teosinte branched1 protein (tb1) gene, partial cds Length = 1074 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 218 ggagggatggcggcggcgg 200
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 21325076 ggagggatggcggcggcgg 21325094
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 taggagggatggcggcggc 82 ||||||||||||||||||| Sbjct: 14878927 taggagggatggcggcggc 14878909
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 21207439 ggagggatggcggcggcgg 21207421 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 16997754 ggagggatggcggcggcgg 16997736
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.4 Identities = 30/34 (88%) Strand = Plus / Minus Query: 65 aggagggatggcggcggcggncaggggcgggggg 98 |||| ||||||||||||||| | | ||||||||| Sbjct: 11932365 aggatggatggcggcggcgggcggcggcgggggg 11932332
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 16295318 ggagggatggcggcggcgg 16295336
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 27729713 ggagggatggcggcggcgg 27729695
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 21970017 ggagggatggcggcggcgg 21969999
>gb|AC104841.6| Homo sapiens BAC clone RP11-475G3 from 2, complete sequence Length = 133221 Score = 38.2 bits (19), Expect = 8.4 Identities = 24/26 (92%) Strand = Plus / Minus Query: 74 ggcggcggcggncaggggcggggggc 99 ||||| ||||| |||||||||||||| Sbjct: 131582 ggcgggggcgggcaggggcggggggc 131557
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete sequence Length = 135216 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 38246 ggagggatggcggcggcgg 38228
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 tggtccgccaccaccgccg 53 ||||||||||||||||||| Sbjct: 3801772 tggtccgccaccaccgccg 3801790 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 78 gcggcggncaggggcggggggc 99 ||||||| |||||||||||||| Sbjct: 1564477 gcggcgggcaggggcggggggc 1564498
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 71 gatggcggcggcggncaggggc 92 |||||||||||||| ||||||| Sbjct: 2307 gatggcggcggcggccaggggc 2328
>dbj|AP003308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1129G05 Length = 132535 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 51825 ggagggatggcggcggcgg 51807
>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0009H10 Length = 175754 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 71 gatggcggcggcggncaggggc 92 |||||||||||||| ||||||| Sbjct: 135184 gatggcggcggcggccaggggc 135205
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 38.2 bits (19), Expect = 8.4 Identities = 30/34 (88%) Strand = Plus / Minus Query: 65 aggagggatggcggcggcggncaggggcgggggg 98 |||| ||||||||||||||| | | ||||||||| Sbjct: 113855 aggatggatggcggcggcgggcggcggcgggggg 113822
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 38.2 bits (19), Expect = 8.4 Identities = 30/34 (88%) Strand = Plus / Minus Query: 65 aggagggatggcggcggcggncaggggcgggggg 98 |||| ||||||||||||||| | | ||||||||| Sbjct: 36845 aggatggatggcggcggcgggcggcggcgggggg 36812
>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0426E02 Length = 166985 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 1170 ggagggatggcggcggcgg 1188
>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1104G07 Length = 119643 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 85496 ggagggatggcggcggcgg 85514
>dbj|AK120878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027I19, full insert sequence Length = 1760 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 566 ggagggatggcggcggcgg 584
>dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H12, full insert sequence Length = 3026 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 71 gatggcggcggcggncaggggc 92 |||||||||||||| ||||||| Sbjct: 1442 gatggcggcggcggccaggggc 1463
>gb|AF466204.1| Sorghum bicolor clone SBTXS_0045I19, partial sequence Length = 77973 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 19758 ggagggatggcggcggcgg 19776
>dbj|AK060974.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E04, full insert sequence Length = 951 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 taggagggatggcggcggc 82 ||||||||||||||||||| Sbjct: 215 taggagggatggcggcggc 233
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 21218703 ggagggatggcggcggcgg 21218685 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 17006794 ggagggatggcggcggcgg 17006776
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 taggagggatggcggcggc 82 ||||||||||||||||||| Sbjct: 14958893 taggagggatggcggcggc 14958875
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 21251295 ggagggatggcggcggcgg 21251313
>emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103_B10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 95132 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggagggatggcggcggcgg 84 ||||||||||||||||||| Sbjct: 36202 ggagggatggcggcggcgg 36184
>dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds Length = 2100 Score = 38.2 bits (19), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 71 gatggcggcggcggncaggggc 92 |||||||||||||| ||||||| Sbjct: 813 gatggcggcggcggccaggggc 834 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,364,807 Number of Sequences: 3902068 Number of extensions: 1364807 Number of successful extensions: 87587 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 84866 Number of HSP's gapped (non-prelim): 2721 length of query: 172 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 150 effective length of database: 17,147,199,772 effective search space: 2572079965800 effective search space used: 2572079965800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
