ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40n06 |
|---|---|
| Clone Library Name | barley_pub |
>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 204 bits (520), Expect = 1e-52 Identities = 95/170 (55%), Positives = 129/170 (75%) Frame = +2 Query: 23 INERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQ 202 I E ++TGLWVGDCFIY +S +RLNY VGGE+ T+ HLDR MYLLGY+ +R+YL DK+ Sbjct: 520 IQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKE 579 Query: 203 FNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIAT 382 N+V Y+LL+S++EY+T V+R DF A+ +LP+IPKEQ VAHFLE +G ++AL ++T Sbjct: 580 LNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVST 639 Query: 383 DSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADEC 532 D +RF+LA+QLG + A +A+E +SE KWKQL ELAIS + +A EC Sbjct: 640 DPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFSLAQEC 689
>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 904 Score = 204 bits (520), Expect = 1e-52 Identities = 95/170 (55%), Positives = 129/170 (75%) Frame = +2 Query: 23 INERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQ 202 I E ++TGLWVGDCFIY +S +RLNY VGGE+ T+ HLDR MYLLGY+ +R+YL DK+ Sbjct: 519 IQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKE 578 Query: 203 FNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIAT 382 N+V Y+LL+S++EY+T V+R DF A+ +LP+IPKEQ VAHFLE +G ++AL ++T Sbjct: 579 LNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVST 638 Query: 383 DSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADEC 532 D +RF+LA+QLG + A +A+E +SE KWKQL ELAIS + +A EC Sbjct: 639 DPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFSLAQEC 688
>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 203 bits (517), Expect = 3e-52 Identities = 94/170 (55%), Positives = 129/170 (75%) Frame = +2 Query: 23 INERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQ 202 I E ++TGLWVGDCFIY +S +RLNY VGGE+ T+ HLDR MYLLGY+ +R+YL DK+ Sbjct: 519 IQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKE 578 Query: 203 FNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIAT 382 N++ Y+LL+S++EY+T V+R DF A+ +LP+IPKEQ VAHFLE +G ++AL ++T Sbjct: 579 LNIISYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVST 638 Query: 383 DSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADEC 532 D +RF+LA+QLG + A +A+E +SE KWKQL ELAIS + +A EC Sbjct: 639 DPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQEC 688
>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 203 bits (516), Expect = 3e-52 Identities = 95/170 (55%), Positives = 128/170 (75%) Frame = +2 Query: 23 INERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQ 202 I E ++TGLWVGDCFIY +S +RLNY VGGE+ T+ HLDR MYLLGY+ +R+YL DK+ Sbjct: 519 IQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKE 578 Query: 203 FNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIAT 382 N+V Y+LL+S++EY+T V+R DF A+ +LP+IPKEQ VAHFLE +G ++AL ++T Sbjct: 579 LNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVST 638 Query: 383 DSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADEC 532 D +RF+LA+QLG + A +A+E +SE KWKQL ELAIS +A EC Sbjct: 639 DPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCPFGLAQEC 688
>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 914 Score = 193 bits (491), Expect = 3e-49 Identities = 89/196 (45%), Positives = 134/196 (68%) Frame = +2 Query: 8 NCFMXINERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVY 187 N ++E ++TGLWVGDCFIY NS +R+NY VGGE+ T+ HLDR MYLLGY+ +R+Y Sbjct: 517 NVLGEVSECVKTGLWVGDCFIYTNSVNRINYYVGGEIVTVSHLDRTMYLLGYVPKDNRIY 576 Query: 188 LIDKQFNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEA 367 L DK+ NV+ + L LS++EY+T V+R DF+RA+ +LP+IPKE VAHFLE +G +A Sbjct: 577 LGDKELNVISFCLQLSVLEYQTAVMRRDFERADVVLPTIPKEHRTRVAHFLEKQGFKSQA 636 Query: 368 LEIATDSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADECXXXXX 547 L+++TD++++FDLA+Q+G ++ A +A E ++ KW QL ++A S + + EC Sbjct: 637 LQVSTDADHKFDLALQIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKAN 696 Query: 548 XXXXXXXXYSSIGDAE 595 ++ GDA+ Sbjct: 697 DLSGLLLLSTASGDAQ 712
>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 1000 Score = 186 bits (473), Expect = 3e-47 Identities = 84/168 (50%), Positives = 121/168 (72%) Frame = +2 Query: 29 ERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQFN 208 E ++TG W+GDCFI+ + +R+NY VGGE+ T+ H+DRP+YLLGY+A +SRVY +DK N Sbjct: 521 EAVKTGFWIGDCFIFTTALNRINYYVGGEIVTIAHVDRPLYLLGYMAKESRVYAVDKDLN 580 Query: 209 VVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIATDS 388 V+ Y LLLS++EY+T V+R DFD A+ +L +IPKEQ VAHFLE +G ++AL ++ D Sbjct: 581 VISYKLLLSVLEYQTAVMRRDFDTADKVLTTIPKEQRTRVAHFLEKQGFKKQALAVSQDP 640 Query: 389 NYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADEC 532 +++FDL+V LG + A +A++ SE KWK L A +L +A EC Sbjct: 641 DHKFDLSVALGDLKTAYDLALQSDSEEKWKALSNAATLKSELLLAGEC 688
>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 889 Score = 140 bits (352), Expect = 4e-33 Identities = 69/193 (35%), Positives = 118/193 (61%), Gaps = 2/193 (1%) Frame = +2 Query: 23 INERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQ 202 ++E I +G WVGD FI+ +++RLNY VGG+ L H + MYLLGYLA ++VYL D++ Sbjct: 532 LSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADRE 591 Query: 203 FNVVGYTLLLSLIEYKTLVLRGDFDRA-NDILPSIP-KEQYDSVAHFLESRGMLEEALEI 376 +V GY + L ++E++TL LRG+ + A ++LP++ K+ +A FLE + EEAL I Sbjct: 592 VHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNI 651 Query: 377 ATDSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADECXXXXXXXX 556 + D + +F+LA+++G++ A+ + + +E KW+ LG+ ++ ++A E Sbjct: 652 SPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAVEAFTNAHDLE 711 Query: 557 XXXXXYSSIGDAE 595 +SS + E Sbjct: 712 SLFLLHSSFNNKE 724
>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 796 Score = 134 bits (337), Expect = 2e-31 Identities = 64/170 (37%), Positives = 102/170 (60%) Frame = +2 Query: 23 INERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQ 202 ++E + G WV + FIY +++RLNY +G + + +++ YLLGY+ R+YL D+ Sbjct: 520 VSESVVNGKWVAETFIYTTTAARLNYLIGDQTYKIANVESSFYLLGYIPRDDRIYLTDRD 579 Query: 203 FNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIAT 382 NVV Y+ L++IEY++LVL+GD + A +L I + ++ FL G E ALE++ Sbjct: 580 MNVVSYSFNLAIIEYQSLVLKGDLEAAQGLLEQISETDRPRLSDFLSRLGYKEAALELSG 639 Query: 383 DSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADEC 532 DS RF+LA+ R+D A IA E+ KW+ LG+ A++ +A EC Sbjct: 640 DSVQRFELALDAQRLDIASQIAQELDDPLKWRSLGDAALNAWDFVLAQEC 689
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 63.5 bits (153), Expect = 4e-10 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 2/197 (1%) Frame = +2 Query: 11 CFMXINERIRTGLW-VGDCFIYNNSSSRLNYCVG-GEVTTLFHLDRPMYLLGYLANQSRV 184 C + N R+++G W FIY +S+ + Y V G+ + LD P+Y+ N V Sbjct: 522 CNIHENIRVKSGAWDESGVFIYT-TSNHIKYAVTTGDYGIIRTLDLPIYVTRVKGNN--V 578 Query: 185 YLIDKQFNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEE 364 Y +D++ T+ + ++K ++ +D ++ + K S+ +L+ +G E Sbjct: 579 YCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNA-KLVGQSIIAYLQKKGYPEV 637 Query: 365 ALEIATDSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADECXXXX 544 AL D RF LA++ G ++ A A + + W++LGE+A+ G ++ + C Sbjct: 638 ALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRT 697 Query: 545 XXXXXXXXXYSSIGDAE 595 Y G+ E Sbjct: 698 KNFDKLSFLYLITGNLE 714
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 62.8 bits (151), Expect = 7e-10 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 2/197 (1%) Frame = +2 Query: 11 CFMXINERIRTGLW-VGDCFIYNNSSSRLNYCVG-GEVTTLFHLDRPMYLLGYLANQSRV 184 C + N R+++G W FIY +S+ + Y V G+ + LD P+Y+ N V Sbjct: 522 CNIHENIRVKSGAWDESGVFIYT-TSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNN--V 578 Query: 185 YLIDKQFNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEE 364 Y +D++ T+ + ++K ++ +D ++ + K S+ +L+ +G E Sbjct: 579 YCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNA-KLVGQSIIAYLQKKGYPEV 637 Query: 365 ALEIATDSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADECXXXX 544 AL D RF LA++ G ++ A A + + W++LGE+A+ G ++ + C Sbjct: 638 ALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRT 697 Query: 545 XXXXXXXXXYSSIGDAE 595 Y G+ E Sbjct: 698 KNFDKVSFLYLITGNLE 714
>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| Length = 1201 Score = 43.5 bits (101), Expect = 5e-04 Identities = 37/189 (19%), Positives = 83/189 (43%), Gaps = 3/189 (1%) Frame = +2 Query: 32 RIRTGLWVGDCFIYNNSSSRLNYCV-GGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQFN 208 RI++ W + ++ + + Y + G+ + L++ +Y+ VY ++++ Sbjct: 533 RIKSAAWDETGVLIYSTLNHIRYSLLNGDRGIIKTLEKTLYITK--VQGKLVYCLNREGE 590 Query: 209 VVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQY--DSVAHFLESRGMLEEALEIAT 382 + T+ + +K ++ +F ++L I ++ +L+ G E AL+ Sbjct: 591 IEILTIDPTEYRFKKALVNKNFP---EVLRLIKDSNLVGQNIISYLQKSGYPEIALQFVQ 647 Query: 383 DSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADECXXXXXXXXXX 562 D + RFDLA++ G +D A A ++ + W++L + A++ G +A+ Sbjct: 648 DPHIRFDLALEYGNLDVALDEAKKLNDSSTWERLIQEALAQGNASLAEMIYQTQHSFDKL 707 Query: 563 XXXYSSIGD 589 Y GD Sbjct: 708 SFLYLVTGD 716
>SMC4_YEAST (Q12267) Structural maintenance of chromosome 4| Length = 1418 Score = 35.0 bits (79), Expect = 0.16 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Frame = +2 Query: 170 NQSRVYLIDKQFNVVGYTLLLS-----LIEYKTLVLRGDFDRANDILPSIPKEQYDSVAH 334 N S+ Y+ +K+ + T LL L + L+L+G+ + + P KE D + Sbjct: 266 NSSKYYINEKESSYTEVTKLLKNEGIDLDHKRFLILQGEVENIAQMKPKAEKESDDGLLE 325 Query: 335 FLESRGMLEEALEIATDSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGK 511 +LE +I +NY+ + ++G++++ + +E ++ + + ++ +GK Sbjct: 326 YLE---------DIIGTANYKPLIEERMGQIENLNEVCLEKENRFEIVDREKNSLESGK 375
>IF140_HUMAN (Q96RY7) Intraflagellar transport 140 homolog (WD and| tetratricopeptide repeats protein 2) Length = 1462 Score = 33.5 bits (75), Expect = 0.48 Identities = 15/59 (25%), Positives = 30/59 (50%) Frame = +2 Query: 356 LEEALEIATDSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGELAISTGKLEMADEC 532 LE+ + D+ F V +G +D+A ++SE W+ + + + T +L++A C Sbjct: 765 LEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVC 823
>TREA_HUMAN (O43280) Trehalase precursor (EC 3.2.1.28) (Alpha,alpha-trehalase)| (Alpha,alpha-trehalose glucohydrolase) Length = 583 Score = 32.0 bits (71), Expect = 1.4 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Frame = +2 Query: 146 MYLLGYLANQ---SRVYLIDKQFNVVGYTLLLSLIEYKTLVLRGDFDRANDILPSIPKEQ 316 +Y G L NQ +++Y DKQF + LS+ + L + R ++ SIP+EQ Sbjct: 32 IYCHGELLNQVQMAKLYQDDKQF----VDMPLSIAPEQVLQTFTELSRDHN--HSIPREQ 85 Query: 317 YDSVAH-FLESRGMLEEALEIATDSNYRFDLAVQLGRVDDAKAIAIEVQSETKWKQLGE 490 + H +++G + L+ T ++++ D L ++ DAK A Q WK+LG+ Sbjct: 86 LQAFVHEHFQAKG---QELQPWTPADWK-DSPQFLQKISDAKLRAWAGQLHQLWKKLGK 140
>EZRA_STAAW (Q8NW47) Septation ring formation regulator ezrA| Length = 564 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +2 Query: 230 LSLIEYKTLVLRGDFDRANDILPSIPK---EQYDSVAHFLESRGMLEEALEIATDSNYR 397 LS +E L+ R + + AND L +I + YD + H ++++ +EE +I TD+ ++ Sbjct: 265 LSFVE--PLISRLELEEANDKLANINDKLDDMYDLIEHEVKAKNDVEETKDIITDNLFK 321
>EZRA_STAAS (Q6G8L0) Septation ring formation regulator ezrA| Length = 564 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +2 Query: 230 LSLIEYKTLVLRGDFDRANDILPSIPK---EQYDSVAHFLESRGMLEEALEIATDSNYR 397 LS +E L+ R + + AND L +I + YD + H ++++ +EE +I TD+ ++ Sbjct: 265 LSFVE--PLISRLELEEANDKLANINDKLDDMYDLIEHEVKAKNDVEETKDIITDNLFK 321
>EZRA_STAAR (Q6GFZ0) Septation ring formation regulator ezrA| Length = 564 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +2 Query: 230 LSLIEYKTLVLRGDFDRANDILPSIPK---EQYDSVAHFLESRGMLEEALEIATDSNYR 397 LS +E L+ R + + AND L +I + YD + H ++++ +EE +I TD+ ++ Sbjct: 265 LSFVE--PLISRLELEEANDKLANINDKLDDMYDLIEHEVKAKNDVEETKDIITDNLFK 321
>EZRA_STAAN (P64003) Septation ring formation regulator ezrA| Length = 564 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +2 Query: 230 LSLIEYKTLVLRGDFDRANDILPSIPK---EQYDSVAHFLESRGMLEEALEIATDSNYR 397 LS +E L+ R + + AND L +I + YD + H ++++ +EE +I TD+ ++ Sbjct: 265 LSFVE--PLISRLELEEANDKLANINDKLDDMYDLIEHEVKAKNDVEETKDIITDNLFK 321
>EZRA_STAAM (P64002) Septation ring formation regulator ezrA| Length = 564 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +2 Query: 230 LSLIEYKTLVLRGDFDRANDILPSIPK---EQYDSVAHFLESRGMLEEALEIATDSNYR 397 LS +E L+ R + + AND L +I + YD + H ++++ +EE +I TD+ ++ Sbjct: 265 LSFVE--PLISRLELEEANDKLANINDKLDDMYDLIEHEVKAKNDVEETKDIITDNLFK 321
>EZRA_STAAC (Q5HF56) Septation ring formation regulator ezrA| Length = 564 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +2 Query: 230 LSLIEYKTLVLRGDFDRANDILPSIPK---EQYDSVAHFLESRGMLEEALEIATDSNYR 397 LS +E L+ R + + AND L +I + YD + H ++++ +EE +I TD+ ++ Sbjct: 265 LSFVE--PLISRLELEEANDKLANINDKLDDMYDLIEHEVKAKNDVEETKDIITDNLFK 321
>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA| Length = 386 Score = 29.6 bits (65), Expect = 6.9 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 11/89 (12%) Frame = +2 Query: 287 DILPSIPKEQYDSVAHFLESRGMLEEALEIAT-DSNYRFD----LAVQLGRVDDAKAIAI 451 ++L +P+E + V ++ +L EAL++ T S+ RFD +QL VD+ +A+ I Sbjct: 99 NLLNQLPEESQNIVKDLQKASELLGEALQLPTCFSSPRFDNDSVTNIQLSLVDEQRAVVI 158 Query: 452 ------EVQSETKWKQLGELAISTGKLEM 520 ++ ++T W S ++E+ Sbjct: 159 LSTEFGQIFTDTLWLSEASNPASLKRIEI 187
>DP2L_METKA (Q8TUV3) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| Length = 1240 Score = 29.6 bits (65), Expect = 6.9 Identities = 35/122 (28%), Positives = 52/122 (42%) Frame = +2 Query: 80 SSSRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQFNVVGYTLLLSLIEYKTLV 259 +++R C G E D M LL L N SR+YL DK+ ++ L+L+ + + Sbjct: 982 NAARRRNCDGDE-------DAFMLLLDVLLNFSRLYLPDKRGGLMDAPLVLTAVVDPYEI 1034 Query: 260 LRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIATDSNYRFDLAVQLGRVDDAK 439 D D+ P E Y + ++ G EE +E D R DL L D + Sbjct: 1035 --DDEVWNMDVCGDYPLELYRKALEYADA-GEAEELIERLED---RLDLPRGLQFTHDTE 1088 Query: 440 AI 445 AI Sbjct: 1089 AI 1090
>TDT_CHICK (P36195) DNA nucleotidylexotransferase (EC 2.7.7.31) (Terminal| addition enzyme) (Terminal deoxynucleotidyltransferase) (Terminal transferase) Length = 506 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/71 (23%), Positives = 32/71 (45%) Frame = +2 Query: 245 YKTLVLRGDFDRANDILPSIPKEQYDSVAHFLESRGMLEEALEIATDSNYRFDLAVQLGR 424 +K L+L D + + IP D++ HF + +L+ +S+Y + Sbjct: 361 HKGLLLYCDIIESTFVKEQIPSRHVDAMDHFQKCFAILKLYQPRVDNSSYNMSKKCDMAE 420 Query: 425 VDDAKAIAIEV 457 V D KAI +++ Sbjct: 421 VKDWKAIRVDL 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,752,077 Number of Sequences: 219361 Number of extensions: 1552988 Number of successful extensions: 3870 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3798 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3869 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
